ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1Y39:D52:D36

Extra

PDB:
ATOM 1 O3' C A 51 117.735 76.099 -7.932 1.00 69.51 O
ATOM 2 P A A 52 118.071 77.670 -7.779 1.00 71.12 P
ATOM 3 OP1 A A 52 117.074 78.404 -8.614 1.00 71.40 O
ATOM 4 OP2 A A 52 119.526 77.876 -8.034 1.00 69.84 O
ATOM 5 O5' A A 52 117.788 77.985 -6.240 1.00 68.39 O
ATOM 6 C5' A A 52 116.493 77.795 -5.679 1.00 66.73 C
ATOM 7 C4' A A 52 116.550 77.864 -4.166 1.00 66.15 C
ATOM 8 O4' A A 52 117.378 76.783 -3.669 1.00 65.52 O
ATOM 9 C3' A A 52 117.176 79.114 -3.566 1.00 66.12 C
ATOM 10 O3' A A 52 116.227 80.160 -3.459 1.00 65.67 O
ATOM 11 C2' A A 52 117.592 78.626 -2.188 1.00 66.09 C
ATOM 12 O2' A A 52 116.520 78.575 -1.271 1.00 67.26 O
ATOM 13 C1' A A 52 118.069 77.208 -2.507 1.00 64.86 C
ATOM 14 N9 A A 52 119.506 77.169 -2.779 1.00 62.90 N
ATOM 15 C8 A A 52 120.155 77.108 -3.989 1.00 61.85 C
ATOM 16 N7 A A 52 121.463 77.115 -3.886 1.00 60.69 N
ATOM 17 C5 A A 52 121.688 77.176 -2.517 1.00 60.38 C
ATOM 18 C6 A A 52 122.862 77.203 -1.755 1.00 60.07 C
ATOM 19 N6 A A 52 124.085 77.165 -2.283 1.00 59.74 N
ATOM 20 N1 A A 52 122.737 77.267 -0.412 1.00 59.62 N
ATOM 21 C2 A A 52 121.512 77.292 0.117 1.00 59.55 C
ATOM 22 N3 A A 52 120.333 77.264 -0.493 1.00 59.78 N
ATOM 23 C4 A A 52 120.493 77.206 -1.825 1.00 61.01 C
ATOM 24 P C A 53 116.498 81.558 -4.203 1.00 66.26 P
ATOM 25 OP1 C A 53 115.364 82.441 -3.811 1.00 67.53 O
ATOM 26 OP2 C A 53 116.777 81.320 -5.645 1.00 66.29 O
ATOM 27 O5' C A 53 117.832 82.102 -3.532 1.00 64.94 O
TER

ATOM 1 O3' A B 35 123.147 78.543 3.124 1.00 53.58 O
ATOM 2 P G B 36 123.248 78.265 4.702 1.00 52.19 P
ATOM 3 OP1 G B 36 123.076 79.576 5.383 1.00 53.78 O
ATOM 4 OP2 G B 36 124.487 77.488 4.906 1.00 52.28 O
ATOM 5 O5' G B 36 122.005 77.319 5.024 1.00 51.04 O
ATOM 6 C5' G B 36 120.814 77.818 5.641 1.00 50.61 C
ATOM 7 C4' G B 36 119.787 76.711 5.752 1.00 51.94 C
ATOM 8 O4' G B 36 119.443 76.242 4.427 1.00 53.10 O
ATOM 9 C3' G B 36 120.265 75.503 6.540 1.00 52.53 C
ATOM 10 O3' G B 36 119.668 75.587 7.826 1.00 53.52 O
ATOM 11 C2' G B 36 119.678 74.316 5.783 1.00 52.52 C
ATOM 12 O2' G B 36 118.370 74.024 6.226 1.00 54.27 O
ATOM 13 C1' G B 36 119.612 74.845 4.347 1.00 53.00 C
ATOM 14 N9 G B 36 120.774 74.617 3.496 1.00 53.31 N
ATOM 15 C8 G B 36 122.099 74.610 3.869 1.00 54.77 C
ATOM 16 N7 G B 36 122.917 74.467 2.861 1.00 54.31 N
ATOM 17 C5 G B 36 122.081 74.348 1.757 1.00 53.95 C
ATOM 18 C6 G B 36 122.394 74.183 0.382 1.00 53.35 C
ATOM 19 O6 G B 36 123.505 74.113 -0.151 1.00 53.38 O
ATOM 20 N1 G B 36 121.245 74.107 -0.399 1.00 52.85 N
ATOM 21 C2 G B 36 119.962 74.191 0.075 1.00 52.98 C
ATOM 22 N2 G B 36 118.995 74.099 -0.844 1.00 51.49 N
ATOM 23 N3 G B 36 119.652 74.353 1.356 1.00 53.29 N
ATOM 24 C4 G B 36 120.756 74.421 2.136 1.00 53.65 C
ATOM 25 P A B 37 120.529 76.067 9.090 1.00 53.98 P
ATOM 26 OP1 A B 37 119.597 76.403 10.193 1.00 57.11 O
ATOM 27 OP2 A B 37 121.484 77.088 8.612 1.00 55.57 O
ATOM 28 O5' A B 37 121.303 74.751 9.531 1.00 53.99 O
TER

Atoms:
OP1: (117.074,78.404,-8.614)
OP2: (119.526,77.876,-8.034)
C3': (117.176,79.114,-3.566)
C1': (118.069,77.208,-2.507)
C5': (116.493,77.795,-5.679)
O4': (117.378,76.783,-3.669)
C8: (120.155,77.108,-3.989)
O2': (116.520,78.575,-1.271)
C6: (122.862,77.203,-1.755)
C5: (121.688,77.176,-2.517)
C4: (120.493,77.206,-1.825)
P: (118.071,77.670,-7.779)
C4': (116.550,77.864,-4.166)
C2': (117.592,78.626,-2.188)
C2: (121.512,77.292,0.117)
N1: (122.737,77.267,-0.412)
N3: (120.333,77.264,-0.493)
N6: (124.085,77.165,-2.283)
N7: (121.463,77.115,-3.886)
N9: (119.506,77.169,-2.779)
O5': (117.788,77.985,-6.240)
O3': (116.227,80.160,-3.459)
OP1: (123.076,79.576,5.383)
OP2: (124.487,77.488,4.906)
C3': (120.265,75.503,6.540)
C1': (119.612,74.845,4.347)
C5': (120.814,77.818,5.641)
O6: (123.505,74.113,-0.151)
O4': (119.443,76.242,4.427)
C8: (122.099,74.610,3.869)
C2: (119.962,74.191,0.075)
C6: (122.394,74.183,0.382)
C5: (122.081,74.348,1.757)
C4: (120.756,74.421,2.136)
P: (123.248,78.265,4.702)
C4': (119.787,76.711,5.752)
C2': (119.678,74.316,5.783)
O2': (118.370,74.024,6.226)
N1: (121.245,74.107,-0.399)
N2: (118.995,74.099,-0.844)
N3: (119.652,74.353,1.356)
N7: (122.917,74.467,2.861)
N9: (120.774,74.617,3.496)
O5': (122.005,77.319,5.024)
O3': (119.668,75.587,7.826)
Image (generated by PyMOL):
PyMOL image
show in jmol