ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1MMS:D52:D36

Extra

PDB:
ATOM 1 O3' C A 51 10.597 2.706 -55.716 1.00 57.12 O
ATOM 2 P A A 52 9.806 2.525 -57.105 1.00 47.42 P
ATOM 3 OP1 A A 52 10.747 2.818 -58.216 1.00 57.18 O
ATOM 4 OP2 A A 52 8.514 3.264 -57.011 1.00 38.37 O
ATOM 5 O5' A A 52 9.456 0.974 -57.138 1.00 48.19 O
ATOM 6 C5' A A 52 10.493 -0.015 -56.995 1.00 51.39 C
ATOM 7 C4' A A 52 9.894 -1.397 -56.965 1.00 45.50 C
ATOM 8 O4' A A 52 8.978 -1.488 -55.847 1.00 45.01 O
ATOM 9 C3' A A 52 9.053 -1.764 -58.178 1.00 51.96 C
ATOM 10 O3' A A 52 9.867 -2.246 -59.243 1.00 53.83 O
ATOM 11 C2' A A 52 8.095 -2.817 -57.622 1.00 48.46 C
ATOM 12 O2' A A 52 8.635 -4.125 -57.578 1.00 47.52 O
ATOM 13 C1' A A 52 7.882 -2.316 -56.192 1.00 43.28 C
ATOM 14 N9 A A 52 6.646 -1.549 -56.032 1.00 30.89 N
ATOM 15 C8 A A 52 6.477 -0.189 -55.914 1.00 25.35 C
ATOM 16 N7 A A 52 5.222 0.179 -55.797 1.00 26.03 N
ATOM 17 C5 A A 52 4.519 -1.019 -55.836 1.00 17.17 C
ATOM 18 C6 A A 52 3.149 -1.314 -55.759 1.00 19.87 C
ATOM 19 N6 A A 52 2.193 -0.387 -55.623 1.00 16.79 N
ATOM 20 N1 A A 52 2.784 -2.616 -55.828 1.00 26.16 N
ATOM 21 C2 A A 52 3.737 -3.548 -55.965 1.00 23.04 C
ATOM 22 N3 A A 52 5.055 -3.394 -56.049 1.00 30.58 N
ATOM 23 C4 A A 52 5.384 -2.090 -55.977 1.00 28.62 C
ATOM 24 P C A 53 9.699 -1.627 -60.718 1.00 44.57 P
ATOM 25 OP1 C A 53 10.506 -2.463 -61.648 1.00 47.11 O
ATOM 26 OP2 C A 53 9.942 -0.162 -60.644 1.00 47.15 O
ATOM 27 O5' C A 53 8.160 -1.850 -61.042 1.00 36.26 O
TER

ATOM 1 O3' A B 35 0.922 -5.900 -56.613 1.00 33.24 O
ATOM 2 P G B 36 0.286 -7.364 -56.455 1.00 31.77 P
ATOM 3 OP1 G B 36 0.266 -8.020 -57.788 1.00 46.35 O
ATOM 4 OP2 G B 36 -0.973 -7.249 -55.682 1.00 28.82 O
ATOM 5 O5' G B 36 1.337 -8.122 -55.545 1.00 32.87 O
ATOM 6 C5' G B 36 2.401 -8.899 -56.109 1.00 29.23 C
ATOM 7 C4' G B 36 3.449 -9.109 -55.061 1.00 33.39 C
ATOM 8 O4' G B 36 4.062 -7.829 -54.802 1.00 39.61 O
ATOM 9 C3' G B 36 2.847 -9.568 -53.742 1.00 26.85 C
ATOM 10 O3' G B 36 2.937 -10.985 -53.689 1.00 26.33 O
ATOM 11 C2' G B 36 3.745 -8.914 -52.696 1.00 29.63 C
ATOM 12 O2' G B 36 4.887 -9.702 -52.418 1.00 30.88 O
ATOM 13 C1' G B 36 4.196 -7.635 -53.412 1.00 31.58 C
ATOM 14 N9 G B 36 3.534 -6.370 -53.099 1.00 24.38 N
ATOM 15 C8 G B 36 2.184 -6.105 -53.015 1.00 13.22 C
ATOM 16 N7 G B 36 1.926 -4.837 -52.821 1.00 6.56 N
ATOM 17 C5 G B 36 3.176 -4.240 -52.743 1.00 11.78 C
ATOM 18 C6 G B 36 3.536 -2.887 -52.546 1.00 26.38 C
ATOM 19 O6 G B 36 2.796 -1.905 -52.394 1.00 28.30 O
ATOM 20 N1 G B 36 4.919 -2.723 -52.537 1.00 19.38 N
ATOM 21 C2 G B 36 5.836 -3.736 -52.697 1.00 26.46 C
ATOM 22 N2 G B 36 7.138 -3.390 -52.661 1.00 19.48 N
ATOM 23 N3 G B 36 5.509 -4.997 -52.881 1.00 20.61 N
ATOM 24 C4 G B 36 4.176 -5.176 -52.894 1.00 16.45 C
ATOM 25 P A B 37 1.639 -11.888 -53.962 1.00 30.91 P
ATOM 26 OP1 A B 37 2.152 -13.234 -54.286 1.00 39.93 O
ATOM 27 OP2 A B 37 0.713 -11.203 -54.900 1.00 35.03 O
ATOM 28 O5' A B 37 0.937 -11.965 -52.543 1.00 35.70 O
TER

Atoms:
OP1: (10.747,2.818,-58.216)
OP2: (8.514,3.264,-57.011)
C3': (9.053,-1.764,-58.178)
C1': (7.882,-2.316,-56.192)
C5': (10.493,-0.015,-56.995)
O4': (8.978,-1.488,-55.847)
C8: (6.477,-0.189,-55.914)
O2': (8.635,-4.125,-57.578)
C6: (3.149,-1.314,-55.759)
C5: (4.519,-1.019,-55.836)
C4: (5.384,-2.090,-55.977)
P: (9.806,2.525,-57.105)
C4': (9.894,-1.397,-56.965)
C2': (8.095,-2.817,-57.622)
C2: (3.737,-3.548,-55.965)
N1: (2.784,-2.616,-55.828)
N3: (5.055,-3.394,-56.049)
N6: (2.193,-0.387,-55.623)
N7: (5.222,0.179,-55.797)
N9: (6.646,-1.549,-56.032)
O5': (9.456,0.974,-57.138)
O3': (9.867,-2.246,-59.243)
OP1: (0.266,-8.020,-57.788)
OP2: (-0.973,-7.249,-55.682)
C3': (2.847,-9.568,-53.742)
C1': (4.196,-7.635,-53.412)
C5': (2.401,-8.899,-56.109)
O6: (2.796,-1.905,-52.394)
O4': (4.062,-7.829,-54.802)
C8: (2.184,-6.105,-53.015)
C2: (5.836,-3.736,-52.697)
C6: (3.536,-2.887,-52.546)
C5: (3.176,-4.240,-52.743)
C4: (4.176,-5.176,-52.894)
P: (0.286,-7.364,-56.455)
C4': (3.449,-9.109,-55.061)
C2': (3.745,-8.914,-52.696)
O2': (4.887,-9.702,-52.418)
N1: (4.919,-2.723,-52.537)
N2: (7.138,-3.390,-52.661)
N3: (5.509,-4.997,-52.881)
N7: (1.926,-4.837,-52.821)
N9: (3.534,-6.370,-53.099)
O5': (1.337,-8.122,-55.545)
O3': (2.937,-10.985,-53.689)
Image (generated by PyMOL):
PyMOL image
show in jmol