ClaRNA

Doublet info:

Details

Nucleotide types: GC
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YIJ:01036:01039

Extra

PDB:
ATOM 1 O3' G A1035 26.358 104.104 112.155 1.00 37.59 O
ATOM 2 P G A1036 27.253 105.335 112.666 1.00 38.37 P
ATOM 3 OP1 G A1036 26.862 105.644 114.064 1.00 38.55 O
ATOM 4 OP2 G A1036 27.197 106.409 111.636 1.00 38.57 O
ATOM 5 O5' G A1036 28.733 104.752 112.669 1.00 37.50 O
ATOM 6 C5' G A1036 29.114 103.743 113.599 1.00 35.98 C
ATOM 7 C4' G A1036 30.553 103.357 113.393 1.00 36.67 C
ATOM 8 O4' G A1036 30.730 102.758 112.085 1.00 36.71 O
ATOM 9 C3' G A1036 31.591 104.466 113.428 1.00 37.95 C
ATOM 10 O3' G A1036 31.867 104.836 114.780 1.00 40.47 O
ATOM 11 C2' G A1036 32.770 103.780 112.748 1.00 38.26 C
ATOM 12 O2' G A1036 33.423 102.872 113.611 1.00 39.90 O
ATOM 13 C1' G A1036 32.061 102.973 111.650 1.00 37.59 C
ATOM 14 N9 G A1036 32.039 103.649 110.353 1.00 37.48 N
ATOM 15 C8 G A1036 31.080 104.509 109.864 1.00 37.15 C
ATOM 16 N7 G A1036 31.375 104.990 108.686 1.00 35.79 N
ATOM 17 C5 G A1036 32.595 104.405 108.372 1.00 36.65 C
ATOM 18 C6 G A1036 33.421 104.553 107.222 1.00 35.41 C
ATOM 19 O6 G A1036 33.233 105.254 106.231 1.00 38.25 O
ATOM 20 N1 G A1036 34.569 103.774 107.310 1.00 34.60 N
ATOM 21 C2 G A1036 34.887 102.955 108.368 1.00 37.03 C
ATOM 22 N2 G A1036 36.034 102.274 108.271 1.00 36.21 N
ATOM 23 N3 G A1036 34.132 102.813 109.447 1.00 37.94 N
ATOM 24 C4 G A1036 33.011 103.564 109.383 1.00 37.07 C
ATOM 25 P A A1037 32.800 106.113 115.113 1.00 41.72 P
ATOM 26 OP1 A A1037 34.218 105.717 114.924 1.00 40.71 O
ATOM 27 OP2 A A1037 32.347 106.616 116.441 1.00 42.12 O
ATOM 28 O5' A A1037 32.433 107.211 114.017 1.00 39.46 O
TER

ATOM 1 O3' A B1038 34.581 111.283 106.257 1.00 34.32 O
ATOM 2 P C B1039 34.330 110.180 105.115 1.00 33.94 P
ATOM 3 OP1 C B1039 34.210 110.924 103.847 1.00 29.05 O
ATOM 4 OP2 C B1039 33.242 109.247 105.530 1.00 36.17 O
ATOM 5 O5' C B1039 35.653 109.305 105.123 1.00 35.64 O
ATOM 6 C5' C B1039 36.779 109.631 104.320 1.00 39.59 C
ATOM 7 C4' C B1039 37.867 108.632 104.588 1.00 43.82 C
ATOM 8 O4' C B1039 38.238 108.742 105.991 1.00 44.94 O
ATOM 9 C3' C B1039 37.438 107.172 104.481 1.00 46.11 C
ATOM 10 O3' C B1039 37.390 106.559 103.193 1.00 48.48 O
ATOM 11 C2' C B1039 38.522 106.510 105.309 1.00 48.12 C
ATOM 12 O2' C B1039 39.782 106.521 104.654 1.00 47.54 O
ATOM 13 C1' C B1039 38.572 107.457 106.501 1.00 46.50 C
ATOM 14 N1 C B1039 37.566 107.052 107.507 1.00 47.37 N
ATOM 15 C2 C B1039 37.949 106.159 108.527 1.00 48.88 C
ATOM 16 O2 C B1039 39.115 105.734 108.552 1.00 51.41 O
ATOM 17 N3 C B1039 37.036 105.784 109.455 1.00 47.65 N
ATOM 18 C4 C B1039 35.791 106.260 109.396 1.00 46.05 C
ATOM 19 N4 C B1039 34.932 105.878 110.341 1.00 44.87 N
ATOM 20 C5 C B1039 35.373 107.156 108.369 1.00 46.94 C
ATOM 21 C6 C B1039 36.283 107.523 107.455 1.00 46.20 C
ATOM 22 P A B1040 38.053 107.264 101.913 1.00 51.48 P
ATOM 23 OP1 A B1040 39.313 107.945 102.326 1.00 51.74 O
ATOM 24 OP2 A B1040 37.003 108.030 101.194 1.00 50.89 O
ATOM 25 O5' A B1040 38.475 106.014 101.022 1.00 44.26 O
TER

Atoms:
OP1: (26.862,105.644,114.064)
OP2: (27.197,106.409,111.636)
C3': (31.591,104.466,113.428)
C1': (32.061,102.973,111.650)
C5': (29.114,103.743,113.599)
O6: (33.233,105.254,106.231)
O4': (30.730,102.758,112.085)
C8: (31.080,104.509,109.864)
C2: (34.887,102.955,108.368)
C6: (33.421,104.553,107.222)
C5: (32.595,104.405,108.372)
C4: (33.011,103.564,109.383)
P: (27.253,105.335,112.666)
C4': (30.553,103.357,113.393)
C2': (32.770,103.780,112.748)
O2': (33.423,102.872,113.611)
N1: (34.569,103.774,107.310)
N2: (36.034,102.274,108.271)
N3: (34.132,102.813,109.447)
N7: (31.375,104.990,108.686)
N9: (32.039,103.649,110.353)
O5': (28.733,104.752,112.669)
O3': (31.867,104.836,114.780)
C2: (37.949,106.159,108.527)
OP1: (34.210,110.924,103.847)
OP2: (33.242,109.247,105.530)
C4: (35.791,106.260,109.396)
O5': (35.653,109.305,105.123)
C3': (37.438,107.172,104.481)
C1': (38.572,107.457,106.501)
O4': (38.238,108.742,105.991)
C5': (36.779,109.631,104.320)
P: (34.330,110.180,105.115)
O2: (39.115,105.734,108.552)
C4': (37.867,108.632,104.588)
C2': (38.522,106.510,105.309)
O2': (39.782,106.521,104.654)
N1: (37.566,107.052,107.507)
N3: (37.036,105.784,109.455)
N4: (34.932,105.878,110.341)
C6: (36.283,107.523,107.455)
C5: (35.373,107.156,108.369)
O3': (37.390,106.559,103.193)
Image (generated by PyMOL):
PyMOL image
show in jmol