Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1LNT:B5:A4
Extra
PDB:
ATOM 1 O3' A A 4 -1.863 20.049 6.077 1.00 35.26 O
ATOM 2 P G A 5 -3.440 20.141 5.742 1.00 35.23 P
ATOM 3 OP1 G A 5 -3.530 20.485 4.290 1.00 37.98 O
ATOM 4 OP2 G A 5 -4.140 20.962 6.738 1.00 34.75 O
ATOM 5 O5' G A 5 -3.990 18.668 5.948 1.00 34.41 O
ATOM 6 C5' G A 5 -3.462 17.595 5.194 1.00 31.97 C
ATOM 7 C4' G A 5 -3.897 16.291 5.800 1.00 32.33 C
ATOM 8 O4' G A 5 -3.497 16.264 7.211 1.00 33.61 O
ATOM 9 C3' G A 5 -5.402 16.139 5.875 1.00 30.24 C
ATOM 10 O3' G A 5 -5.907 15.648 4.646 1.00 34.72 O
ATOM 11 C2' G A 5 -5.537 15.107 6.983 1.00 31.95 C
ATOM 12 O2' G A 5 -5.259 13.799 6.526 1.00 32.35 O
ATOM 13 C1' G A 5 -4.459 15.562 7.965 1.00 30.55 C
ATOM 14 N9 G A 5 -4.902 16.413 9.079 1.00 30.26 N
ATOM 15 C8 G A 5 -4.777 17.780 9.173 1.00 28.80 C
ATOM 16 N7 G A 5 -5.253 18.267 10.289 1.00 27.97 N
ATOM 17 C5 G A 5 -5.707 17.157 10.980 1.00 27.28 C
ATOM 18 C6 G A 5 -6.304 17.063 12.254 1.00 26.50 C
ATOM 19 O6 G A 5 -6.549 17.965 13.046 1.00 29.38 O
ATOM 20 N1 G A 5 -6.615 15.749 12.587 1.00 25.31 N
ATOM 21 C2 G A 5 -6.383 14.662 11.798 1.00 23.99 C
ATOM 22 N2 G A 5 -6.788 13.476 12.309 1.00 24.05 N
ATOM 23 N3 G A 5 -5.802 14.725 10.592 1.00 27.64 N
ATOM 24 C4 G A 5 -5.498 16.003 10.249 1.00 28.20 C
ATOM 25 P C A 6 -7.501 15.621 4.386 1.00 36.26 P
ATOM 26 OP1 C A 6 -7.694 16.057 3.005 1.00 36.23 O
ATOM 27 OP2 C A 6 -8.209 16.389 5.450 1.00 33.70 O
ATOM 28 O5' C A 6 -7.847 14.079 4.485 1.00 32.09 O
TER
ATOM 1 O3' U B 3 -11.665 21.688 15.756 1.00 32.30 O
ATOM 2 P C B 4 -10.160 21.137 15.935 1.00 36.36 P
ATOM 3 OP1 C B 4 -9.983 20.968 17.424 1.00 36.53 O
ATOM 4 OP2 C B 4 -9.219 21.946 15.171 1.00 33.90 O
ATOM 5 O5' C B 4 -10.103 19.701 15.240 1.00 36.05 O
ATOM 6 C5' C B 4 -10.914 18.661 15.678 1.00 36.70 C
ATOM 7 C4' C B 4 -11.052 17.618 14.601 1.00 36.35 C
ATOM 8 O4' C B 4 -11.028 18.217 13.268 1.00 32.30 O
ATOM 9 C3' C B 4 -9.927 16.606 14.479 1.00 35.07 C
ATOM 10 O3' C B 4 -10.031 15.630 15.504 1.00 35.25 O
ATOM 11 C2' C B 4 -10.311 15.952 13.159 1.00 33.42 C
ATOM 12 O2' C B 4 -11.347 14.997 13.427 1.00 34.51 O
ATOM 13 C1' C B 4 -10.822 17.170 12.367 1.00 28.48 C
ATOM 14 N1 C B 4 -9.913 17.618 11.324 1.00 26.11 N
ATOM 15 C2 C B 4 -9.781 16.780 10.257 1.00 23.08 C
ATOM 16 O2 C B 4 -10.359 15.701 10.295 1.00 24.22 O
ATOM 17 N3 C B 4 -9.038 17.139 9.211 1.00 24.16 N
ATOM 18 C4 C B 4 -8.403 18.307 9.219 1.00 26.64 C
ATOM 19 N4 C B 4 -7.675 18.614 8.094 1.00 28.01 N
ATOM 20 C5 C B 4 -8.475 19.194 10.327 1.00 26.66 C
ATOM 21 C6 C B 4 -9.240 18.817 11.364 1.00 26.14 C
ATOM 22 P A B 5 -8.744 14.793 15.934 1.00 32.59 P
ATOM 23 OP1 A B 5 -8.145 15.475 17.110 1.00 36.70 O
ATOM 24 OP2 A B 5 -7.912 14.604 14.748 1.00 32.84 O
ATOM 25 O5' A B 5 -9.448 13.461 16.436 1.00 36.40 O
TER
ATOM 2 P G A 5 -3.440 20.141 5.742 1.00 35.23 P
ATOM 3 OP1 G A 5 -3.530 20.485 4.290 1.00 37.98 O
ATOM 4 OP2 G A 5 -4.140 20.962 6.738 1.00 34.75 O
ATOM 5 O5' G A 5 -3.990 18.668 5.948 1.00 34.41 O
ATOM 6 C5' G A 5 -3.462 17.595 5.194 1.00 31.97 C
ATOM 7 C4' G A 5 -3.897 16.291 5.800 1.00 32.33 C
ATOM 8 O4' G A 5 -3.497 16.264 7.211 1.00 33.61 O
ATOM 9 C3' G A 5 -5.402 16.139 5.875 1.00 30.24 C
ATOM 10 O3' G A 5 -5.907 15.648 4.646 1.00 34.72 O
ATOM 11 C2' G A 5 -5.537 15.107 6.983 1.00 31.95 C
ATOM 12 O2' G A 5 -5.259 13.799 6.526 1.00 32.35 O
ATOM 13 C1' G A 5 -4.459 15.562 7.965 1.00 30.55 C
ATOM 14 N9 G A 5 -4.902 16.413 9.079 1.00 30.26 N
ATOM 15 C8 G A 5 -4.777 17.780 9.173 1.00 28.80 C
ATOM 16 N7 G A 5 -5.253 18.267 10.289 1.00 27.97 N
ATOM 17 C5 G A 5 -5.707 17.157 10.980 1.00 27.28 C
ATOM 18 C6 G A 5 -6.304 17.063 12.254 1.00 26.50 C
ATOM 19 O6 G A 5 -6.549 17.965 13.046 1.00 29.38 O
ATOM 20 N1 G A 5 -6.615 15.749 12.587 1.00 25.31 N
ATOM 21 C2 G A 5 -6.383 14.662 11.798 1.00 23.99 C
ATOM 22 N2 G A 5 -6.788 13.476 12.309 1.00 24.05 N
ATOM 23 N3 G A 5 -5.802 14.725 10.592 1.00 27.64 N
ATOM 24 C4 G A 5 -5.498 16.003 10.249 1.00 28.20 C
ATOM 25 P C A 6 -7.501 15.621 4.386 1.00 36.26 P
ATOM 26 OP1 C A 6 -7.694 16.057 3.005 1.00 36.23 O
ATOM 27 OP2 C A 6 -8.209 16.389 5.450 1.00 33.70 O
ATOM 28 O5' C A 6 -7.847 14.079 4.485 1.00 32.09 O
TER
ATOM 1 O3' U B 3 -11.665 21.688 15.756 1.00 32.30 O
ATOM 2 P C B 4 -10.160 21.137 15.935 1.00 36.36 P
ATOM 3 OP1 C B 4 -9.983 20.968 17.424 1.00 36.53 O
ATOM 4 OP2 C B 4 -9.219 21.946 15.171 1.00 33.90 O
ATOM 5 O5' C B 4 -10.103 19.701 15.240 1.00 36.05 O
ATOM 6 C5' C B 4 -10.914 18.661 15.678 1.00 36.70 C
ATOM 7 C4' C B 4 -11.052 17.618 14.601 1.00 36.35 C
ATOM 8 O4' C B 4 -11.028 18.217 13.268 1.00 32.30 O
ATOM 9 C3' C B 4 -9.927 16.606 14.479 1.00 35.07 C
ATOM 10 O3' C B 4 -10.031 15.630 15.504 1.00 35.25 O
ATOM 11 C2' C B 4 -10.311 15.952 13.159 1.00 33.42 C
ATOM 12 O2' C B 4 -11.347 14.997 13.427 1.00 34.51 O
ATOM 13 C1' C B 4 -10.822 17.170 12.367 1.00 28.48 C
ATOM 14 N1 C B 4 -9.913 17.618 11.324 1.00 26.11 N
ATOM 15 C2 C B 4 -9.781 16.780 10.257 1.00 23.08 C
ATOM 16 O2 C B 4 -10.359 15.701 10.295 1.00 24.22 O
ATOM 17 N3 C B 4 -9.038 17.139 9.211 1.00 24.16 N
ATOM 18 C4 C B 4 -8.403 18.307 9.219 1.00 26.64 C
ATOM 19 N4 C B 4 -7.675 18.614 8.094 1.00 28.01 N
ATOM 20 C5 C B 4 -8.475 19.194 10.327 1.00 26.66 C
ATOM 21 C6 C B 4 -9.240 18.817 11.364 1.00 26.14 C
ATOM 22 P A B 5 -8.744 14.793 15.934 1.00 32.59 P
ATOM 23 OP1 A B 5 -8.145 15.475 17.110 1.00 36.70 O
ATOM 24 OP2 A B 5 -7.912 14.604 14.748 1.00 32.84 O
ATOM 25 O5' A B 5 -9.448 13.461 16.436 1.00 36.40 O
TER
Atoms:
OP1: (-3.530,20.485,4.290)
OP2: (-4.140,20.962,6.738)
C3': (-5.402,16.139,5.875)
C1': (-4.459,15.562,7.965)
C5': (-3.462,17.595,5.194)
O6: (-6.549,17.965,13.046)
O4': (-3.497,16.264,7.211)
C8: (-4.777,17.780,9.173)
C2: (-6.383,14.662,11.798)
C6: (-6.304,17.063,12.254)
C5: (-5.707,17.157,10.980)
C4: (-5.498,16.003,10.249)
P: (-3.440,20.141,5.742)
C4': (-3.897,16.291,5.800)
C2': (-5.537,15.107,6.983)
O2': (-5.259,13.799,6.526)
N1: (-6.615,15.749,12.587)
N2: (-6.788,13.476,12.309)
N3: (-5.802,14.725,10.592)
N7: (-5.253,18.267,10.289)
N9: (-4.902,16.413,9.079)
O5': (-3.990,18.668,5.948)
O3': (-5.907,15.648,4.646)
OP2: (-4.140,20.962,6.738)
C3': (-5.402,16.139,5.875)
C1': (-4.459,15.562,7.965)
C5': (-3.462,17.595,5.194)
O6: (-6.549,17.965,13.046)
O4': (-3.497,16.264,7.211)
C8: (-4.777,17.780,9.173)
C2: (-6.383,14.662,11.798)
C6: (-6.304,17.063,12.254)
C5: (-5.707,17.157,10.980)
C4: (-5.498,16.003,10.249)
P: (-3.440,20.141,5.742)
C4': (-3.897,16.291,5.800)
C2': (-5.537,15.107,6.983)
O2': (-5.259,13.799,6.526)
N1: (-6.615,15.749,12.587)
N2: (-6.788,13.476,12.309)
N3: (-5.802,14.725,10.592)
N7: (-5.253,18.267,10.289)
N9: (-4.902,16.413,9.079)
O5': (-3.990,18.668,5.948)
O3': (-5.907,15.648,4.646)
C2: (-9.781,16.780,10.257)
OP1: (-9.983,20.968,17.424)
OP2: (-9.219,21.946,15.171)
C4: (-8.403,18.307,9.219)
O5': (-10.103,19.701,15.240)
C3': (-9.927,16.606,14.479)
C1': (-10.822,17.170,12.367)
O4': (-11.028,18.217,13.268)
C5': (-10.914,18.661,15.678)
P: (-10.160,21.137,15.935)
O2: (-10.359,15.701,10.295)
C4': (-11.052,17.618,14.601)
C2': (-10.311,15.952,13.159)
O2': (-11.347,14.997,13.427)
N1: (-9.913,17.618,11.324)
N3: (-9.038,17.139,9.211)
N4: (-7.675,18.614,8.094)
C6: (-9.240,18.817,11.364)
C5: (-8.475,19.194,10.327)
O3': (-10.031,15.630,15.504)
OP1: (-9.983,20.968,17.424)
OP2: (-9.219,21.946,15.171)
C4: (-8.403,18.307,9.219)
O5': (-10.103,19.701,15.240)
C3': (-9.927,16.606,14.479)
C1': (-10.822,17.170,12.367)
O4': (-11.028,18.217,13.268)
C5': (-10.914,18.661,15.678)
P: (-10.160,21.137,15.935)
O2: (-10.359,15.701,10.295)
C4': (-11.052,17.618,14.601)
C2': (-10.311,15.952,13.159)
O2': (-11.347,14.997,13.427)
N1: (-9.913,17.618,11.324)
N3: (-9.038,17.139,9.211)
N4: (-7.675,18.614,8.094)
C6: (-9.240,18.817,11.364)
C5: (-8.475,19.194,10.327)
O3': (-10.031,15.630,15.504)
Image (generated by PyMOL):