Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A2465:A2468
Extra
PDB:
ATOM 1 O3' A A2464 -113.102 -40.832 -40.353 1.00 12.94 O
ATOM 2 P G A2465 -113.665 -40.806 -41.844 1.00 13.09 P
ATOM 3 OP1 G A2465 -113.481 -39.430 -42.340 1.00 13.09 O
ATOM 4 OP2 G A2465 -115.047 -41.392 -41.804 1.00 13.09 O
ATOM 5 O5' G A2465 -112.694 -41.809 -42.610 1.00 13.09 O
ATOM 6 C5' G A2465 -111.292 -41.657 -42.546 1.00 13.09 C
ATOM 7 C4' G A2465 -110.600 -42.799 -43.225 1.00 13.09 C
ATOM 8 O4' G A2465 -110.832 -44.002 -42.470 1.00 13.09 O
ATOM 9 C3' G A2465 -111.087 -43.145 -44.630 1.00 13.09 C
ATOM 10 O3' G A2465 -110.498 -42.327 -45.632 1.00 13.09 O
ATOM 11 C2' G A2465 -110.722 -44.616 -44.761 1.00 13.09 C
ATOM 12 O2' G A2465 -109.362 -44.771 -45.124 1.00 13.09 O
ATOM 13 C1' G A2465 -110.909 -45.112 -43.330 1.00 13.09 C
ATOM 14 N9 G A2465 -112.212 -45.744 -43.141 1.00 12.87 N
ATOM 15 C8 G A2465 -113.353 -45.139 -42.704 1.00 12.87 C
ATOM 16 N7 G A2465 -114.371 -45.963 -42.644 1.00 12.87 N
ATOM 17 C5 G A2465 -113.846 -47.159 -43.059 1.00 12.87 C
ATOM 18 C6 G A2465 -114.473 -48.386 -43.205 1.00 12.87 C
ATOM 19 O6 G A2465 -115.650 -48.632 -42.964 1.00 12.87 O
ATOM 20 N1 G A2465 -113.605 -49.352 -43.675 1.00 12.87 N
ATOM 21 C2 G A2465 -112.293 -49.134 -43.952 1.00 12.87 C
ATOM 22 N2 G A2465 -111.582 -50.173 -44.382 1.00 12.87 N
ATOM 23 N3 G A2465 -111.691 -47.983 -43.809 1.00 12.87 N
ATOM 24 C4 G A2465 -112.526 -47.049 -43.362 1.00 12.87 C
ATOM 25 P U A2466 -111.016 -42.377 -47.145 1.00 20.39 P
ATOM 26 OP1 U A2466 -110.670 -43.693 -47.693 1.00 20.39 O
ATOM 27 OP2 U A2466 -110.485 -41.170 -47.801 1.00 20.39 O
ATOM 28 O5' U A2466 -112.586 -42.274 -46.989 1.00 20.39 O
TER
ATOM 1 O3' U B2467 -120.170 -46.020 -48.151 1.00 26.03 O
ATOM 2 P C B2468 -120.391 -46.334 -46.600 1.00 11.54 P
ATOM 3 OP1 C B2468 -121.840 -46.539 -46.391 1.00 11.54 O
ATOM 4 OP2 C B2468 -119.707 -45.253 -45.830 1.00 11.54 O
ATOM 5 O5' C B2468 -119.607 -47.722 -46.405 1.00 11.54 O
ATOM 6 C5' C B2468 -119.850 -48.844 -47.261 1.00 11.54 C
ATOM 7 C4' C B2468 -118.689 -49.818 -47.251 1.00 11.54 C
ATOM 8 O4' C B2468 -117.558 -49.233 -47.930 1.00 11.54 O
ATOM 9 C3' C B2468 -118.162 -50.201 -45.882 1.00 11.54 C
ATOM 10 O3' C B2468 -118.837 -51.311 -45.361 1.00 11.54 O
ATOM 11 C2' C B2468 -116.681 -50.464 -46.117 1.00 11.54 C
ATOM 12 O2' C B2468 -116.468 -51.784 -46.575 1.00 11.54 O
ATOM 13 C1' C B2468 -116.367 -49.523 -47.251 1.00 11.54 C
ATOM 14 N1 C B2468 -115.789 -48.271 -46.795 1.00 11.42 N
ATOM 15 C2 C B2468 -114.411 -48.285 -46.702 1.00 11.42 C
ATOM 16 O2 C B2468 -113.840 -49.376 -46.932 1.00 11.42 O
ATOM 17 N3 C B2468 -113.801 -47.126 -46.334 1.00 11.42 N
ATOM 18 C4 C B2468 -114.530 -46.030 -46.079 1.00 11.42 C
ATOM 19 N4 C B2468 -113.873 -44.928 -45.726 1.00 11.42 N
ATOM 20 C5 C B2468 -115.949 -46.008 -46.188 1.00 11.42 C
ATOM 21 C6 C B2468 -116.532 -47.150 -46.558 1.00 11.42 C
ATOM 22 P A B2469 -119.810 -51.138 -44.117 1.00 8.19 P
ATOM 23 OP1 A B2469 -120.653 -52.347 -44.082 1.00 8.19 O
ATOM 24 OP2 A B2469 -120.458 -49.812 -44.235 1.00 8.19 O
ATOM 25 O5' A B2469 -118.807 -51.129 -42.885 1.00 8.19 O
TER
ATOM 2 P G A2465 -113.665 -40.806 -41.844 1.00 13.09 P
ATOM 3 OP1 G A2465 -113.481 -39.430 -42.340 1.00 13.09 O
ATOM 4 OP2 G A2465 -115.047 -41.392 -41.804 1.00 13.09 O
ATOM 5 O5' G A2465 -112.694 -41.809 -42.610 1.00 13.09 O
ATOM 6 C5' G A2465 -111.292 -41.657 -42.546 1.00 13.09 C
ATOM 7 C4' G A2465 -110.600 -42.799 -43.225 1.00 13.09 C
ATOM 8 O4' G A2465 -110.832 -44.002 -42.470 1.00 13.09 O
ATOM 9 C3' G A2465 -111.087 -43.145 -44.630 1.00 13.09 C
ATOM 10 O3' G A2465 -110.498 -42.327 -45.632 1.00 13.09 O
ATOM 11 C2' G A2465 -110.722 -44.616 -44.761 1.00 13.09 C
ATOM 12 O2' G A2465 -109.362 -44.771 -45.124 1.00 13.09 O
ATOM 13 C1' G A2465 -110.909 -45.112 -43.330 1.00 13.09 C
ATOM 14 N9 G A2465 -112.212 -45.744 -43.141 1.00 12.87 N
ATOM 15 C8 G A2465 -113.353 -45.139 -42.704 1.00 12.87 C
ATOM 16 N7 G A2465 -114.371 -45.963 -42.644 1.00 12.87 N
ATOM 17 C5 G A2465 -113.846 -47.159 -43.059 1.00 12.87 C
ATOM 18 C6 G A2465 -114.473 -48.386 -43.205 1.00 12.87 C
ATOM 19 O6 G A2465 -115.650 -48.632 -42.964 1.00 12.87 O
ATOM 20 N1 G A2465 -113.605 -49.352 -43.675 1.00 12.87 N
ATOM 21 C2 G A2465 -112.293 -49.134 -43.952 1.00 12.87 C
ATOM 22 N2 G A2465 -111.582 -50.173 -44.382 1.00 12.87 N
ATOM 23 N3 G A2465 -111.691 -47.983 -43.809 1.00 12.87 N
ATOM 24 C4 G A2465 -112.526 -47.049 -43.362 1.00 12.87 C
ATOM 25 P U A2466 -111.016 -42.377 -47.145 1.00 20.39 P
ATOM 26 OP1 U A2466 -110.670 -43.693 -47.693 1.00 20.39 O
ATOM 27 OP2 U A2466 -110.485 -41.170 -47.801 1.00 20.39 O
ATOM 28 O5' U A2466 -112.586 -42.274 -46.989 1.00 20.39 O
TER
ATOM 1 O3' U B2467 -120.170 -46.020 -48.151 1.00 26.03 O
ATOM 2 P C B2468 -120.391 -46.334 -46.600 1.00 11.54 P
ATOM 3 OP1 C B2468 -121.840 -46.539 -46.391 1.00 11.54 O
ATOM 4 OP2 C B2468 -119.707 -45.253 -45.830 1.00 11.54 O
ATOM 5 O5' C B2468 -119.607 -47.722 -46.405 1.00 11.54 O
ATOM 6 C5' C B2468 -119.850 -48.844 -47.261 1.00 11.54 C
ATOM 7 C4' C B2468 -118.689 -49.818 -47.251 1.00 11.54 C
ATOM 8 O4' C B2468 -117.558 -49.233 -47.930 1.00 11.54 O
ATOM 9 C3' C B2468 -118.162 -50.201 -45.882 1.00 11.54 C
ATOM 10 O3' C B2468 -118.837 -51.311 -45.361 1.00 11.54 O
ATOM 11 C2' C B2468 -116.681 -50.464 -46.117 1.00 11.54 C
ATOM 12 O2' C B2468 -116.468 -51.784 -46.575 1.00 11.54 O
ATOM 13 C1' C B2468 -116.367 -49.523 -47.251 1.00 11.54 C
ATOM 14 N1 C B2468 -115.789 -48.271 -46.795 1.00 11.42 N
ATOM 15 C2 C B2468 -114.411 -48.285 -46.702 1.00 11.42 C
ATOM 16 O2 C B2468 -113.840 -49.376 -46.932 1.00 11.42 O
ATOM 17 N3 C B2468 -113.801 -47.126 -46.334 1.00 11.42 N
ATOM 18 C4 C B2468 -114.530 -46.030 -46.079 1.00 11.42 C
ATOM 19 N4 C B2468 -113.873 -44.928 -45.726 1.00 11.42 N
ATOM 20 C5 C B2468 -115.949 -46.008 -46.188 1.00 11.42 C
ATOM 21 C6 C B2468 -116.532 -47.150 -46.558 1.00 11.42 C
ATOM 22 P A B2469 -119.810 -51.138 -44.117 1.00 8.19 P
ATOM 23 OP1 A B2469 -120.653 -52.347 -44.082 1.00 8.19 O
ATOM 24 OP2 A B2469 -120.458 -49.812 -44.235 1.00 8.19 O
ATOM 25 O5' A B2469 -118.807 -51.129 -42.885 1.00 8.19 O
TER
Atoms:
OP1: (-113.481,-39.430,-42.340)
OP2: (-115.047,-41.392,-41.804)
C3': (-111.087,-43.145,-44.630)
C1': (-110.909,-45.112,-43.330)
C5': (-111.292,-41.657,-42.546)
O6: (-115.650,-48.632,-42.964)
O4': (-110.832,-44.002,-42.470)
C8: (-113.353,-45.139,-42.704)
C2: (-112.293,-49.134,-43.952)
C6: (-114.473,-48.386,-43.205)
C5: (-113.846,-47.159,-43.059)
C4: (-112.526,-47.049,-43.362)
P: (-113.665,-40.806,-41.844)
C4': (-110.600,-42.799,-43.225)
C2': (-110.722,-44.616,-44.761)
O2': (-109.362,-44.771,-45.124)
N1: (-113.605,-49.352,-43.675)
N2: (-111.582,-50.173,-44.382)
N3: (-111.691,-47.983,-43.809)
N7: (-114.371,-45.963,-42.644)
N9: (-112.212,-45.744,-43.141)
O5': (-112.694,-41.809,-42.610)
O3': (-110.498,-42.327,-45.632)
OP2: (-115.047,-41.392,-41.804)
C3': (-111.087,-43.145,-44.630)
C1': (-110.909,-45.112,-43.330)
C5': (-111.292,-41.657,-42.546)
O6: (-115.650,-48.632,-42.964)
O4': (-110.832,-44.002,-42.470)
C8: (-113.353,-45.139,-42.704)
C2: (-112.293,-49.134,-43.952)
C6: (-114.473,-48.386,-43.205)
C5: (-113.846,-47.159,-43.059)
C4: (-112.526,-47.049,-43.362)
P: (-113.665,-40.806,-41.844)
C4': (-110.600,-42.799,-43.225)
C2': (-110.722,-44.616,-44.761)
O2': (-109.362,-44.771,-45.124)
N1: (-113.605,-49.352,-43.675)
N2: (-111.582,-50.173,-44.382)
N3: (-111.691,-47.983,-43.809)
N7: (-114.371,-45.963,-42.644)
N9: (-112.212,-45.744,-43.141)
O5': (-112.694,-41.809,-42.610)
O3': (-110.498,-42.327,-45.632)
C2: (-114.411,-48.285,-46.702)
OP1: (-121.840,-46.539,-46.391)
OP2: (-119.707,-45.253,-45.830)
C4: (-114.530,-46.030,-46.079)
O5': (-119.607,-47.722,-46.405)
C3': (-118.162,-50.201,-45.882)
C1': (-116.367,-49.523,-47.251)
O4': (-117.558,-49.233,-47.930)
C5': (-119.850,-48.844,-47.261)
P: (-120.391,-46.334,-46.600)
O2: (-113.840,-49.376,-46.932)
C4': (-118.689,-49.818,-47.251)
C2': (-116.681,-50.464,-46.117)
O2': (-116.468,-51.784,-46.575)
N1: (-115.789,-48.271,-46.795)
N3: (-113.801,-47.126,-46.334)
N4: (-113.873,-44.928,-45.726)
C6: (-116.532,-47.150,-46.558)
C5: (-115.949,-46.008,-46.188)
O3': (-118.837,-51.311,-45.361)
OP1: (-121.840,-46.539,-46.391)
OP2: (-119.707,-45.253,-45.830)
C4: (-114.530,-46.030,-46.079)
O5': (-119.607,-47.722,-46.405)
C3': (-118.162,-50.201,-45.882)
C1': (-116.367,-49.523,-47.251)
O4': (-117.558,-49.233,-47.930)
C5': (-119.850,-48.844,-47.261)
P: (-120.391,-46.334,-46.600)
O2: (-113.840,-49.376,-46.932)
C4': (-118.689,-49.818,-47.251)
C2': (-116.681,-50.464,-46.117)
O2': (-116.468,-51.784,-46.575)
N1: (-115.789,-48.271,-46.795)
N3: (-113.801,-47.126,-46.334)
N4: (-113.873,-44.928,-45.726)
C6: (-116.532,-47.150,-46.558)
C5: (-115.949,-46.008,-46.188)
O3': (-118.837,-51.311,-45.361)
Image (generated by PyMOL):