Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B24:B22
Extra
PDB:
ATOM 1 O3' U A 23 -13.882 51.008 22.398 1.00108.96 O
ATOM 2 P C A 24 -15.203 51.614 23.070 1.00110.22 P
ATOM 3 OP1 C A 24 -15.496 52.930 22.444 1.00110.06 O
ATOM 4 OP2 C A 24 -15.019 51.524 24.541 1.00110.18 O
ATOM 5 O5' C A 24 -16.339 50.587 22.640 1.00110.79 O
ATOM 6 C5' C A 24 -17.078 49.889 23.626 1.00111.36 C
ATOM 7 C4' C A 24 -18.315 50.665 23.965 1.00111.65 C
ATOM 8 O4' C A 24 -19.114 50.800 22.766 1.00110.58 O
ATOM 9 C3' C A 24 -19.204 50.047 25.034 1.00112.71 C
ATOM 10 O3' C A 24 -19.701 51.093 25.860 1.00116.08 O
ATOM 11 C2' C A 24 -20.317 49.381 24.225 1.00111.38 C
ATOM 12 O2' C A 24 -21.559 49.360 24.900 1.00110.85 O
ATOM 13 C1' C A 24 -20.405 50.276 22.990 1.00110.37 C
ATOM 14 N1 C A 24 -20.821 49.554 21.775 1.00108.53 N
ATOM 15 C2 C A 24 -22.103 48.985 21.727 1.00107.50 C
ATOM 16 O2 C A 24 -22.845 49.089 22.715 1.00107.02 O
ATOM 17 N3 C A 24 -22.496 48.335 20.607 1.00106.70 N
ATOM 18 C4 C A 24 -21.665 48.236 19.566 1.00106.37 C
ATOM 19 N4 C A 24 -22.098 47.586 18.484 1.00105.12 N
ATOM 20 C5 C A 24 -20.354 48.799 19.589 1.00106.23 C
ATOM 21 C6 C A 24 -19.977 49.443 20.703 1.00107.38 C
ATOM 22 P G A 25 -18.920 51.476 27.213 1.00118.63 P
ATOM 23 OP1 G A 25 -17.462 51.523 26.925 1.00118.02 O
ATOM 24 OP2 G A 25 -19.426 50.575 28.280 1.00118.58 O
ATOM 25 O5' G A 25 -19.413 52.958 27.529 1.00120.52 O
TER
ATOM 1 O3' C B 21 -17.450 45.694 15.629 1.00 72.91 O
ATOM 2 P C B 22 -17.080 47.228 15.885 1.00 73.53 P
ATOM 3 OP1 C B 22 -17.682 47.625 17.179 1.00 74.19 O
ATOM 4 OP2 C B 22 -17.458 47.955 14.651 1.00 73.26 O
ATOM 5 O5' C B 22 -15.493 47.213 16.022 1.00 74.17 O
ATOM 6 C5' C B 22 -14.755 48.412 15.867 1.00 78.58 C
ATOM 7 C4' C B 22 -13.282 48.125 15.721 1.00 80.99 C
ATOM 8 O4' C B 22 -13.071 47.055 14.764 1.00 80.33 O
ATOM 9 C3' C B 22 -12.519 49.311 15.150 1.00 83.94 C
ATOM 10 O3' C B 22 -12.137 50.229 16.163 1.00 90.50 O
ATOM 11 C2' C B 22 -11.324 48.658 14.474 1.00 81.30 C
ATOM 12 O2' C B 22 -10.291 48.414 15.403 1.00 81.04 O
ATOM 13 C1' C B 22 -11.927 47.342 13.974 1.00 78.77 C
ATOM 14 N1 C B 22 -12.340 47.370 12.560 1.00 75.80 N
ATOM 15 C2 C B 22 -11.363 47.233 11.567 1.00 74.86 C
ATOM 16 O2 C B 22 -10.175 47.126 11.901 1.00 73.22 O
ATOM 17 N3 C B 22 -11.739 47.222 10.265 1.00 73.97 N
ATOM 18 C4 C B 22 -13.026 47.347 9.940 1.00 72.97 C
ATOM 19 N4 C B 22 -13.340 47.325 8.645 1.00 71.54 N
ATOM 20 C5 C B 22 -14.042 47.501 10.930 1.00 72.52 C
ATOM 21 C6 C B 22 -13.658 47.511 12.215 1.00 74.52 C
ATOM 22 P U B 23 -13.210 51.295 16.714 1.00 96.27 P
ATOM 23 OP1 U B 23 -14.279 51.505 15.689 1.00 94.12 O
ATOM 24 OP2 U B 23 -12.425 52.459 17.204 1.00 96.50 O
ATOM 25 O5' U B 23 -13.861 50.523 17.952 1.00 98.91 O
TER
ATOM 2 P C A 24 -15.203 51.614 23.070 1.00110.22 P
ATOM 3 OP1 C A 24 -15.496 52.930 22.444 1.00110.06 O
ATOM 4 OP2 C A 24 -15.019 51.524 24.541 1.00110.18 O
ATOM 5 O5' C A 24 -16.339 50.587 22.640 1.00110.79 O
ATOM 6 C5' C A 24 -17.078 49.889 23.626 1.00111.36 C
ATOM 7 C4' C A 24 -18.315 50.665 23.965 1.00111.65 C
ATOM 8 O4' C A 24 -19.114 50.800 22.766 1.00110.58 O
ATOM 9 C3' C A 24 -19.204 50.047 25.034 1.00112.71 C
ATOM 10 O3' C A 24 -19.701 51.093 25.860 1.00116.08 O
ATOM 11 C2' C A 24 -20.317 49.381 24.225 1.00111.38 C
ATOM 12 O2' C A 24 -21.559 49.360 24.900 1.00110.85 O
ATOM 13 C1' C A 24 -20.405 50.276 22.990 1.00110.37 C
ATOM 14 N1 C A 24 -20.821 49.554 21.775 1.00108.53 N
ATOM 15 C2 C A 24 -22.103 48.985 21.727 1.00107.50 C
ATOM 16 O2 C A 24 -22.845 49.089 22.715 1.00107.02 O
ATOM 17 N3 C A 24 -22.496 48.335 20.607 1.00106.70 N
ATOM 18 C4 C A 24 -21.665 48.236 19.566 1.00106.37 C
ATOM 19 N4 C A 24 -22.098 47.586 18.484 1.00105.12 N
ATOM 20 C5 C A 24 -20.354 48.799 19.589 1.00106.23 C
ATOM 21 C6 C A 24 -19.977 49.443 20.703 1.00107.38 C
ATOM 22 P G A 25 -18.920 51.476 27.213 1.00118.63 P
ATOM 23 OP1 G A 25 -17.462 51.523 26.925 1.00118.02 O
ATOM 24 OP2 G A 25 -19.426 50.575 28.280 1.00118.58 O
ATOM 25 O5' G A 25 -19.413 52.958 27.529 1.00120.52 O
TER
ATOM 1 O3' C B 21 -17.450 45.694 15.629 1.00 72.91 O
ATOM 2 P C B 22 -17.080 47.228 15.885 1.00 73.53 P
ATOM 3 OP1 C B 22 -17.682 47.625 17.179 1.00 74.19 O
ATOM 4 OP2 C B 22 -17.458 47.955 14.651 1.00 73.26 O
ATOM 5 O5' C B 22 -15.493 47.213 16.022 1.00 74.17 O
ATOM 6 C5' C B 22 -14.755 48.412 15.867 1.00 78.58 C
ATOM 7 C4' C B 22 -13.282 48.125 15.721 1.00 80.99 C
ATOM 8 O4' C B 22 -13.071 47.055 14.764 1.00 80.33 O
ATOM 9 C3' C B 22 -12.519 49.311 15.150 1.00 83.94 C
ATOM 10 O3' C B 22 -12.137 50.229 16.163 1.00 90.50 O
ATOM 11 C2' C B 22 -11.324 48.658 14.474 1.00 81.30 C
ATOM 12 O2' C B 22 -10.291 48.414 15.403 1.00 81.04 O
ATOM 13 C1' C B 22 -11.927 47.342 13.974 1.00 78.77 C
ATOM 14 N1 C B 22 -12.340 47.370 12.560 1.00 75.80 N
ATOM 15 C2 C B 22 -11.363 47.233 11.567 1.00 74.86 C
ATOM 16 O2 C B 22 -10.175 47.126 11.901 1.00 73.22 O
ATOM 17 N3 C B 22 -11.739 47.222 10.265 1.00 73.97 N
ATOM 18 C4 C B 22 -13.026 47.347 9.940 1.00 72.97 C
ATOM 19 N4 C B 22 -13.340 47.325 8.645 1.00 71.54 N
ATOM 20 C5 C B 22 -14.042 47.501 10.930 1.00 72.52 C
ATOM 21 C6 C B 22 -13.658 47.511 12.215 1.00 74.52 C
ATOM 22 P U B 23 -13.210 51.295 16.714 1.00 96.27 P
ATOM 23 OP1 U B 23 -14.279 51.505 15.689 1.00 94.12 O
ATOM 24 OP2 U B 23 -12.425 52.459 17.204 1.00 96.50 O
ATOM 25 O5' U B 23 -13.861 50.523 17.952 1.00 98.91 O
TER
Atoms:
C2: (-22.103,48.985,21.727)
OP1: (-15.496,52.930,22.444)
OP2: (-15.019,51.524,24.541)
C4: (-21.665,48.236,19.566)
O5': (-16.339,50.587,22.640)
C3': (-19.204,50.047,25.034)
C1': (-20.405,50.276,22.990)
O4': (-19.114,50.800,22.766)
C5': (-17.078,49.889,23.626)
P: (-15.203,51.614,23.070)
O2: (-22.845,49.089,22.715)
C4': (-18.315,50.665,23.965)
C2': (-20.317,49.381,24.225)
O2': (-21.559,49.360,24.900)
N1: (-20.821,49.554,21.775)
N3: (-22.496,48.335,20.607)
N4: (-22.098,47.586,18.484)
C6: (-19.977,49.443,20.703)
C5: (-20.354,48.799,19.589)
O3': (-19.701,51.093,25.860)
OP1: (-15.496,52.930,22.444)
OP2: (-15.019,51.524,24.541)
C4: (-21.665,48.236,19.566)
O5': (-16.339,50.587,22.640)
C3': (-19.204,50.047,25.034)
C1': (-20.405,50.276,22.990)
O4': (-19.114,50.800,22.766)
C5': (-17.078,49.889,23.626)
P: (-15.203,51.614,23.070)
O2: (-22.845,49.089,22.715)
C4': (-18.315,50.665,23.965)
C2': (-20.317,49.381,24.225)
O2': (-21.559,49.360,24.900)
N1: (-20.821,49.554,21.775)
N3: (-22.496,48.335,20.607)
N4: (-22.098,47.586,18.484)
C6: (-19.977,49.443,20.703)
C5: (-20.354,48.799,19.589)
O3': (-19.701,51.093,25.860)
C2: (-11.363,47.233,11.567)
OP1: (-17.682,47.625,17.179)
OP2: (-17.458,47.955,14.651)
C4: (-13.026,47.347,9.940)
O5': (-15.493,47.213,16.022)
C3': (-12.519,49.311,15.150)
C1': (-11.927,47.342,13.974)
O4': (-13.071,47.055,14.764)
C5': (-14.755,48.412,15.867)
P: (-17.080,47.228,15.885)
O2: (-10.175,47.126,11.901)
C4': (-13.282,48.125,15.721)
C2': (-11.324,48.658,14.474)
O2': (-10.291,48.414,15.403)
N1: (-12.340,47.370,12.560)
N3: (-11.739,47.222,10.265)
N4: (-13.340,47.325,8.645)
C6: (-13.658,47.511,12.215)
C5: (-14.042,47.501,10.930)
O3': (-12.137,50.229,16.163)
OP1: (-17.682,47.625,17.179)
OP2: (-17.458,47.955,14.651)
C4: (-13.026,47.347,9.940)
O5': (-15.493,47.213,16.022)
C3': (-12.519,49.311,15.150)
C1': (-11.927,47.342,13.974)
O4': (-13.071,47.055,14.764)
C5': (-14.755,48.412,15.867)
P: (-17.080,47.228,15.885)
O2: (-10.175,47.126,11.901)
C4': (-13.282,48.125,15.721)
C2': (-11.324,48.658,14.474)
O2': (-10.291,48.414,15.403)
N1: (-12.340,47.370,12.560)
N3: (-11.739,47.222,10.265)
N4: (-13.340,47.325,8.645)
C6: (-13.658,47.511,12.215)
C5: (-14.042,47.501,10.930)
O3': (-12.137,50.229,16.163)
Image (generated by PyMOL):