Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5K:E58:E22
Extra
PDB:
ATOM 1 O3' U A 57 -1.180 7.787 116.713 1.00 62.94 O
ATOM 2 P A A 58 -2.548 8.620 116.797 1.00 74.08 P
ATOM 3 OP1 A A 58 -3.368 8.017 117.873 1.00 74.12 O
ATOM 4 OP2 A A 58 -3.106 8.733 115.425 1.00 73.57 O
ATOM 5 O5' A A 58 -2.089 10.063 117.279 1.00 67.65 O
ATOM 6 C5' A A 58 -1.165 10.221 118.348 1.00 67.25 C
ATOM 7 C4' A A 58 -0.968 11.686 118.623 1.00 64.36 C
ATOM 8 O4' A A 58 -0.586 12.317 117.378 1.00 69.26 O
ATOM 9 C3' A A 58 -2.228 12.407 119.067 1.00 72.71 C
ATOM 10 O3' A A 58 -2.287 12.386 120.490 1.00 76.82 O
ATOM 11 C2' A A 58 -2.022 13.818 118.534 1.00 65.98 C
ATOM 12 O2' A A 58 -1.237 14.606 119.402 1.00 70.50 O
ATOM 13 C1' A A 58 -1.250 13.555 117.239 1.00 65.01 C
ATOM 14 N9 A A 58 -2.049 13.493 116.016 1.00 66.34 N
ATOM 15 C8 A A 58 -2.343 12.376 115.270 1.00 66.68 C
ATOM 16 N7 A A 58 -3.057 12.626 114.199 1.00 65.38 N
ATOM 17 C5 A A 58 -3.253 14.000 114.246 1.00 67.16 C
ATOM 18 C6 A A 58 -3.935 14.885 113.395 1.00 66.45 C
ATOM 19 N6 A A 58 -4.570 14.507 112.287 1.00 69.58 N
ATOM 20 N1 A A 58 -3.943 16.192 113.727 1.00 73.55 N
ATOM 21 C2 A A 58 -3.308 16.575 114.845 1.00 74.81 C
ATOM 22 N3 A A 58 -2.635 15.839 115.726 1.00 72.08 N
ATOM 23 C4 A A 58 -2.643 14.545 115.363 1.00 68.56 C
ATOM 24 P U A 59 -3.656 12.751 121.242 1.00 80.73 P
ATOM 25 OP1 U A 59 -3.442 12.598 122.704 1.00 87.29 O
ATOM 26 OP2 U A 59 -4.725 11.969 120.573 1.00 62.01 O
ATOM 27 O5' U A 59 -3.839 14.305 120.947 1.00 74.43 O
TER
ATOM 1 O3' A B 21 -7.150 11.870 107.429 1.00 85.28 O
ATOM 2 P A B 22 -5.924 12.758 106.890 1.00 91.78 P
ATOM 3 OP1 A B 22 -5.549 12.244 105.549 1.00 80.55 O
ATOM 4 OP2 A B 22 -4.895 12.836 107.962 1.00 76.21 O
ATOM 5 O5' A B 22 -6.554 14.211 106.728 1.00 79.32 O
ATOM 6 C5' A B 22 -7.740 14.404 105.969 1.00 72.33 C
ATOM 7 C4' A B 22 -8.332 15.758 106.261 1.00 73.72 C
ATOM 8 O4' A B 22 -8.720 15.823 107.658 1.00 86.56 O
ATOM 9 C3' A B 22 -7.391 16.939 106.098 1.00 78.99 C
ATOM 10 O3' A B 22 -7.285 17.353 104.743 1.00 66.02 O
ATOM 11 C2' A B 22 -8.066 17.999 106.957 1.00 82.38 C
ATOM 12 O2' A B 22 -9.146 18.628 106.300 1.00 87.66 O
ATOM 13 C1' A B 22 -8.586 17.157 108.124 1.00 87.23 C
ATOM 14 N9 A B 22 -7.678 17.168 109.272 1.00 87.49 N
ATOM 15 C8 A B 22 -6.756 16.222 109.652 1.00 89.19 C
ATOM 16 N7 A B 22 -6.084 16.544 110.733 1.00 87.00 N
ATOM 17 C5 A B 22 -6.599 17.782 111.088 1.00 88.58 C
ATOM 18 C6 A B 22 -6.306 18.664 112.143 1.00 87.67 C
ATOM 19 N6 A B 22 -5.382 18.426 113.074 1.00 86.93 N
ATOM 20 N1 A B 22 -7.004 19.818 112.208 1.00 88.83 N
ATOM 21 C2 A B 22 -7.930 20.061 111.272 1.00 86.87 C
ATOM 22 N3 A B 22 -8.295 19.315 110.235 1.00 84.54 N
ATOM 23 C4 A B 22 -7.583 18.176 110.199 1.00 87.36 C
ATOM 24 P A B 23 -5.991 18.177 104.271 1.00 85.36 P
ATOM 25 OP1 A B 23 -6.114 18.538 102.831 1.00 73.87 O
ATOM 26 OP2 A B 23 -4.804 17.413 104.741 1.00 71.73 O
ATOM 27 O5' A B 23 -6.099 19.526 105.107 1.00 79.37 O
TER
ATOM 2 P A A 58 -2.548 8.620 116.797 1.00 74.08 P
ATOM 3 OP1 A A 58 -3.368 8.017 117.873 1.00 74.12 O
ATOM 4 OP2 A A 58 -3.106 8.733 115.425 1.00 73.57 O
ATOM 5 O5' A A 58 -2.089 10.063 117.279 1.00 67.65 O
ATOM 6 C5' A A 58 -1.165 10.221 118.348 1.00 67.25 C
ATOM 7 C4' A A 58 -0.968 11.686 118.623 1.00 64.36 C
ATOM 8 O4' A A 58 -0.586 12.317 117.378 1.00 69.26 O
ATOM 9 C3' A A 58 -2.228 12.407 119.067 1.00 72.71 C
ATOM 10 O3' A A 58 -2.287 12.386 120.490 1.00 76.82 O
ATOM 11 C2' A A 58 -2.022 13.818 118.534 1.00 65.98 C
ATOM 12 O2' A A 58 -1.237 14.606 119.402 1.00 70.50 O
ATOM 13 C1' A A 58 -1.250 13.555 117.239 1.00 65.01 C
ATOM 14 N9 A A 58 -2.049 13.493 116.016 1.00 66.34 N
ATOM 15 C8 A A 58 -2.343 12.376 115.270 1.00 66.68 C
ATOM 16 N7 A A 58 -3.057 12.626 114.199 1.00 65.38 N
ATOM 17 C5 A A 58 -3.253 14.000 114.246 1.00 67.16 C
ATOM 18 C6 A A 58 -3.935 14.885 113.395 1.00 66.45 C
ATOM 19 N6 A A 58 -4.570 14.507 112.287 1.00 69.58 N
ATOM 20 N1 A A 58 -3.943 16.192 113.727 1.00 73.55 N
ATOM 21 C2 A A 58 -3.308 16.575 114.845 1.00 74.81 C
ATOM 22 N3 A A 58 -2.635 15.839 115.726 1.00 72.08 N
ATOM 23 C4 A A 58 -2.643 14.545 115.363 1.00 68.56 C
ATOM 24 P U A 59 -3.656 12.751 121.242 1.00 80.73 P
ATOM 25 OP1 U A 59 -3.442 12.598 122.704 1.00 87.29 O
ATOM 26 OP2 U A 59 -4.725 11.969 120.573 1.00 62.01 O
ATOM 27 O5' U A 59 -3.839 14.305 120.947 1.00 74.43 O
TER
ATOM 1 O3' A B 21 -7.150 11.870 107.429 1.00 85.28 O
ATOM 2 P A B 22 -5.924 12.758 106.890 1.00 91.78 P
ATOM 3 OP1 A B 22 -5.549 12.244 105.549 1.00 80.55 O
ATOM 4 OP2 A B 22 -4.895 12.836 107.962 1.00 76.21 O
ATOM 5 O5' A B 22 -6.554 14.211 106.728 1.00 79.32 O
ATOM 6 C5' A B 22 -7.740 14.404 105.969 1.00 72.33 C
ATOM 7 C4' A B 22 -8.332 15.758 106.261 1.00 73.72 C
ATOM 8 O4' A B 22 -8.720 15.823 107.658 1.00 86.56 O
ATOM 9 C3' A B 22 -7.391 16.939 106.098 1.00 78.99 C
ATOM 10 O3' A B 22 -7.285 17.353 104.743 1.00 66.02 O
ATOM 11 C2' A B 22 -8.066 17.999 106.957 1.00 82.38 C
ATOM 12 O2' A B 22 -9.146 18.628 106.300 1.00 87.66 O
ATOM 13 C1' A B 22 -8.586 17.157 108.124 1.00 87.23 C
ATOM 14 N9 A B 22 -7.678 17.168 109.272 1.00 87.49 N
ATOM 15 C8 A B 22 -6.756 16.222 109.652 1.00 89.19 C
ATOM 16 N7 A B 22 -6.084 16.544 110.733 1.00 87.00 N
ATOM 17 C5 A B 22 -6.599 17.782 111.088 1.00 88.58 C
ATOM 18 C6 A B 22 -6.306 18.664 112.143 1.00 87.67 C
ATOM 19 N6 A B 22 -5.382 18.426 113.074 1.00 86.93 N
ATOM 20 N1 A B 22 -7.004 19.818 112.208 1.00 88.83 N
ATOM 21 C2 A B 22 -7.930 20.061 111.272 1.00 86.87 C
ATOM 22 N3 A B 22 -8.295 19.315 110.235 1.00 84.54 N
ATOM 23 C4 A B 22 -7.583 18.176 110.199 1.00 87.36 C
ATOM 24 P A B 23 -5.991 18.177 104.271 1.00 85.36 P
ATOM 25 OP1 A B 23 -6.114 18.538 102.831 1.00 73.87 O
ATOM 26 OP2 A B 23 -4.804 17.413 104.741 1.00 71.73 O
ATOM 27 O5' A B 23 -6.099 19.526 105.107 1.00 79.37 O
TER
Atoms:
OP1: (-3.368,8.017,117.873)
OP2: (-3.106,8.733,115.425)
C3': (-2.228,12.407,119.067)
C1': (-1.250,13.555,117.239)
C5': (-1.165,10.221,118.348)
O4': (-0.586,12.317,117.378)
C8: (-2.343,12.376,115.270)
O2': (-1.237,14.606,119.402)
C6: (-3.935,14.885,113.395)
C5: (-3.253,14.000,114.246)
C4: (-2.643,14.545,115.363)
P: (-2.548,8.620,116.797)
C4': (-0.968,11.686,118.623)
C2': (-2.022,13.818,118.534)
C2: (-3.308,16.575,114.845)
N1: (-3.943,16.192,113.727)
N3: (-2.635,15.839,115.726)
N6: (-4.570,14.507,112.287)
N7: (-3.057,12.626,114.199)
N9: (-2.049,13.493,116.016)
O5': (-2.089,10.063,117.279)
O3': (-2.287,12.386,120.490)
OP2: (-3.106,8.733,115.425)
C3': (-2.228,12.407,119.067)
C1': (-1.250,13.555,117.239)
C5': (-1.165,10.221,118.348)
O4': (-0.586,12.317,117.378)
C8: (-2.343,12.376,115.270)
O2': (-1.237,14.606,119.402)
C6: (-3.935,14.885,113.395)
C5: (-3.253,14.000,114.246)
C4: (-2.643,14.545,115.363)
P: (-2.548,8.620,116.797)
C4': (-0.968,11.686,118.623)
C2': (-2.022,13.818,118.534)
C2: (-3.308,16.575,114.845)
N1: (-3.943,16.192,113.727)
N3: (-2.635,15.839,115.726)
N6: (-4.570,14.507,112.287)
N7: (-3.057,12.626,114.199)
N9: (-2.049,13.493,116.016)
O5': (-2.089,10.063,117.279)
O3': (-2.287,12.386,120.490)
OP1: (-5.549,12.244,105.549)
OP2: (-4.895,12.836,107.962)
C3': (-7.391,16.939,106.098)
C1': (-8.586,17.157,108.124)
C5': (-7.740,14.404,105.969)
O4': (-8.720,15.823,107.658)
C8: (-6.756,16.222,109.652)
O2': (-9.146,18.628,106.300)
C6: (-6.306,18.664,112.143)
C5: (-6.599,17.782,111.088)
C4: (-7.583,18.176,110.199)
P: (-5.924,12.758,106.890)
C4': (-8.332,15.758,106.261)
C2': (-8.066,17.999,106.957)
C2: (-7.930,20.061,111.272)
N1: (-7.004,19.818,112.208)
N3: (-8.295,19.315,110.235)
N6: (-5.382,18.426,113.074)
N7: (-6.084,16.544,110.733)
N9: (-7.678,17.168,109.272)
O5': (-6.554,14.211,106.728)
O3': (-7.285,17.353,104.743)
OP2: (-4.895,12.836,107.962)
C3': (-7.391,16.939,106.098)
C1': (-8.586,17.157,108.124)
C5': (-7.740,14.404,105.969)
O4': (-8.720,15.823,107.658)
C8: (-6.756,16.222,109.652)
O2': (-9.146,18.628,106.300)
C6: (-6.306,18.664,112.143)
C5: (-6.599,17.782,111.088)
C4: (-7.583,18.176,110.199)
P: (-5.924,12.758,106.890)
C4': (-8.332,15.758,106.261)
C2': (-8.066,17.999,106.957)
C2: (-7.930,20.061,111.272)
N1: (-7.004,19.818,112.208)
N3: (-8.295,19.315,110.235)
N6: (-5.382,18.426,113.074)
N7: (-6.084,16.544,110.733)
N9: (-7.678,17.168,109.272)
O5': (-6.554,14.211,106.728)
O3': (-7.285,17.353,104.743)
Image (generated by PyMOL):