Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:941:939
Extra
PDB:
ATOM 1 O3' C A 40 93.942 23.256 92.144 1.00 79.78 O
ATOM 2 P C A 41 92.746 22.202 91.920 1.00 78.81 P
ATOM 3 OP1 C A 41 93.189 21.199 90.918 1.00 78.92 O
ATOM 4 OP2 C A 41 91.484 22.955 91.697 1.00 78.57 O
ATOM 5 O5' C A 41 92.648 21.459 93.323 1.00 78.14 O
ATOM 6 C5' C A 41 91.472 20.742 93.687 1.00 76.96 C
ATOM 7 C4' C A 41 91.415 20.552 95.180 1.00 76.92 C
ATOM 8 O4' C A 41 91.581 21.822 95.857 1.00 77.97 O
ATOM 9 C3' C A 41 90.072 20.038 95.648 1.00 76.93 C
ATOM 10 O3' C A 41 90.037 18.632 95.524 1.00 75.95 O
ATOM 11 C2' C A 41 89.999 20.533 97.083 1.00 78.29 C
ATOM 12 O2' C A 41 90.732 19.721 97.980 1.00 80.15 O
ATOM 13 C1' C A 41 90.688 21.897 96.960 1.00 79.04 C
ATOM 14 N1 C A 41 89.787 23.056 96.750 1.00 80.75 N
ATOM 15 C2 C A 41 88.771 23.329 97.690 1.00 81.19 C
ATOM 16 O2 C A 41 88.604 22.556 98.645 1.00 82.20 O
ATOM 17 N3 C A 41 87.998 24.428 97.522 1.00 81.28 N
ATOM 18 C4 C A 41 88.192 25.228 96.470 1.00 81.00 C
ATOM 19 N4 C A 41 87.424 26.312 96.358 1.00 81.63 N
ATOM 20 C5 C A 41 89.187 24.957 95.489 1.00 80.69 C
ATOM 21 C6 C A 41 89.952 23.874 95.663 1.00 81.26 C
ATOM 22 P G A 42 89.285 17.977 94.274 1.00 75.68 P
ATOM 23 OP1 G A 42 89.166 16.518 94.517 1.00 77.53 O
ATOM 24 OP2 G A 42 89.910 18.458 93.015 1.00 74.76 O
ATOM 25 O5' G A 42 87.835 18.612 94.388 1.00 75.52 O
TER
ATOM 1 O3' U B 38 88.033 28.127 91.438 1.00 76.63 O
ATOM 2 P C B 39 89.113 28.814 92.416 1.00 77.04 P
ATOM 3 OP1 C B 39 89.467 27.869 93.492 1.00 78.78 O
ATOM 4 OP2 C B 39 88.548 30.136 92.770 1.00 76.23 O
ATOM 5 O5' C B 39 90.420 29.056 91.530 1.00 78.91 O
ATOM 6 C5' C B 39 90.358 29.057 90.097 1.00 79.93 C
ATOM 7 C4' C B 39 91.589 29.708 89.500 1.00 80.56 C
ATOM 8 O4' C B 39 91.664 31.105 89.875 1.00 80.31 O
ATOM 9 C3' C B 39 92.964 29.229 89.935 1.00 80.77 C
ATOM 10 O3' C B 39 93.301 27.973 89.347 1.00 82.21 O
ATOM 11 C2' C B 39 93.845 30.337 89.360 1.00 80.14 C
ATOM 12 O2' C B 39 94.035 30.185 87.965 1.00 79.93 O
ATOM 13 C1' C B 39 92.969 31.574 89.577 1.00 78.77 C
ATOM 14 N1 C B 39 93.433 32.473 90.650 1.00 77.08 N
ATOM 15 C2 C B 39 94.401 33.451 90.345 1.00 77.09 C
ATOM 16 O2 C B 39 94.848 33.525 89.187 1.00 77.76 O
ATOM 17 N3 C B 39 94.825 34.288 91.318 1.00 76.64 N
ATOM 18 C4 C B 39 94.328 34.182 92.550 1.00 76.00 C
ATOM 19 N4 C B 39 94.770 35.037 93.476 1.00 74.85 N
ATOM 20 C5 C B 39 93.352 33.198 92.889 1.00 76.87 C
ATOM 21 C6 C B 39 92.938 32.371 91.919 1.00 76.46 C
ATOM 22 P C B 40 94.670 27.228 89.762 1.00 82.98 P
ATOM 23 OP1 C B 40 95.760 28.241 89.835 1.00 81.13 O
ATOM 24 OP2 C B 40 94.820 26.057 88.856 1.00 82.30 O
ATOM 25 O5' C B 40 94.419 26.686 91.245 1.00 82.29 O
TER
ATOM 2 P C A 41 92.746 22.202 91.920 1.00 78.81 P
ATOM 3 OP1 C A 41 93.189 21.199 90.918 1.00 78.92 O
ATOM 4 OP2 C A 41 91.484 22.955 91.697 1.00 78.57 O
ATOM 5 O5' C A 41 92.648 21.459 93.323 1.00 78.14 O
ATOM 6 C5' C A 41 91.472 20.742 93.687 1.00 76.96 C
ATOM 7 C4' C A 41 91.415 20.552 95.180 1.00 76.92 C
ATOM 8 O4' C A 41 91.581 21.822 95.857 1.00 77.97 O
ATOM 9 C3' C A 41 90.072 20.038 95.648 1.00 76.93 C
ATOM 10 O3' C A 41 90.037 18.632 95.524 1.00 75.95 O
ATOM 11 C2' C A 41 89.999 20.533 97.083 1.00 78.29 C
ATOM 12 O2' C A 41 90.732 19.721 97.980 1.00 80.15 O
ATOM 13 C1' C A 41 90.688 21.897 96.960 1.00 79.04 C
ATOM 14 N1 C A 41 89.787 23.056 96.750 1.00 80.75 N
ATOM 15 C2 C A 41 88.771 23.329 97.690 1.00 81.19 C
ATOM 16 O2 C A 41 88.604 22.556 98.645 1.00 82.20 O
ATOM 17 N3 C A 41 87.998 24.428 97.522 1.00 81.28 N
ATOM 18 C4 C A 41 88.192 25.228 96.470 1.00 81.00 C
ATOM 19 N4 C A 41 87.424 26.312 96.358 1.00 81.63 N
ATOM 20 C5 C A 41 89.187 24.957 95.489 1.00 80.69 C
ATOM 21 C6 C A 41 89.952 23.874 95.663 1.00 81.26 C
ATOM 22 P G A 42 89.285 17.977 94.274 1.00 75.68 P
ATOM 23 OP1 G A 42 89.166 16.518 94.517 1.00 77.53 O
ATOM 24 OP2 G A 42 89.910 18.458 93.015 1.00 74.76 O
ATOM 25 O5' G A 42 87.835 18.612 94.388 1.00 75.52 O
TER
ATOM 1 O3' U B 38 88.033 28.127 91.438 1.00 76.63 O
ATOM 2 P C B 39 89.113 28.814 92.416 1.00 77.04 P
ATOM 3 OP1 C B 39 89.467 27.869 93.492 1.00 78.78 O
ATOM 4 OP2 C B 39 88.548 30.136 92.770 1.00 76.23 O
ATOM 5 O5' C B 39 90.420 29.056 91.530 1.00 78.91 O
ATOM 6 C5' C B 39 90.358 29.057 90.097 1.00 79.93 C
ATOM 7 C4' C B 39 91.589 29.708 89.500 1.00 80.56 C
ATOM 8 O4' C B 39 91.664 31.105 89.875 1.00 80.31 O
ATOM 9 C3' C B 39 92.964 29.229 89.935 1.00 80.77 C
ATOM 10 O3' C B 39 93.301 27.973 89.347 1.00 82.21 O
ATOM 11 C2' C B 39 93.845 30.337 89.360 1.00 80.14 C
ATOM 12 O2' C B 39 94.035 30.185 87.965 1.00 79.93 O
ATOM 13 C1' C B 39 92.969 31.574 89.577 1.00 78.77 C
ATOM 14 N1 C B 39 93.433 32.473 90.650 1.00 77.08 N
ATOM 15 C2 C B 39 94.401 33.451 90.345 1.00 77.09 C
ATOM 16 O2 C B 39 94.848 33.525 89.187 1.00 77.76 O
ATOM 17 N3 C B 39 94.825 34.288 91.318 1.00 76.64 N
ATOM 18 C4 C B 39 94.328 34.182 92.550 1.00 76.00 C
ATOM 19 N4 C B 39 94.770 35.037 93.476 1.00 74.85 N
ATOM 20 C5 C B 39 93.352 33.198 92.889 1.00 76.87 C
ATOM 21 C6 C B 39 92.938 32.371 91.919 1.00 76.46 C
ATOM 22 P C B 40 94.670 27.228 89.762 1.00 82.98 P
ATOM 23 OP1 C B 40 95.760 28.241 89.835 1.00 81.13 O
ATOM 24 OP2 C B 40 94.820 26.057 88.856 1.00 82.30 O
ATOM 25 O5' C B 40 94.419 26.686 91.245 1.00 82.29 O
TER
Atoms:
C2: (88.771,23.329,97.690)
OP1: (93.189,21.199,90.918)
OP2: (91.484,22.955,91.697)
C4: (88.192,25.228,96.470)
O5': (92.648,21.459,93.323)
C3': (90.072,20.038,95.648)
C1': (90.688,21.897,96.960)
O4': (91.581,21.822,95.857)
C5': (91.472,20.742,93.687)
P: (92.746,22.202,91.920)
O2: (88.604,22.556,98.645)
C4': (91.415,20.552,95.180)
C2': (89.999,20.533,97.083)
O2': (90.732,19.721,97.980)
N1: (89.787,23.056,96.750)
N3: (87.998,24.428,97.522)
N4: (87.424,26.312,96.358)
C6: (89.952,23.874,95.663)
C5: (89.187,24.957,95.489)
O3': (90.037,18.632,95.524)
OP1: (93.189,21.199,90.918)
OP2: (91.484,22.955,91.697)
C4: (88.192,25.228,96.470)
O5': (92.648,21.459,93.323)
C3': (90.072,20.038,95.648)
C1': (90.688,21.897,96.960)
O4': (91.581,21.822,95.857)
C5': (91.472,20.742,93.687)
P: (92.746,22.202,91.920)
O2: (88.604,22.556,98.645)
C4': (91.415,20.552,95.180)
C2': (89.999,20.533,97.083)
O2': (90.732,19.721,97.980)
N1: (89.787,23.056,96.750)
N3: (87.998,24.428,97.522)
N4: (87.424,26.312,96.358)
C6: (89.952,23.874,95.663)
C5: (89.187,24.957,95.489)
O3': (90.037,18.632,95.524)
C2: (94.401,33.451,90.345)
OP1: (89.467,27.869,93.492)
OP2: (88.548,30.136,92.770)
C4: (94.328,34.182,92.550)
O5': (90.420,29.056,91.530)
C3': (92.964,29.229,89.935)
C1': (92.969,31.574,89.577)
O4': (91.664,31.105,89.875)
C5': (90.358,29.057,90.097)
P: (89.113,28.814,92.416)
O2: (94.848,33.525,89.187)
C4': (91.589,29.708,89.500)
C2': (93.845,30.337,89.360)
O2': (94.035,30.185,87.965)
N1: (93.433,32.473,90.650)
N3: (94.825,34.288,91.318)
N4: (94.770,35.037,93.476)
C6: (92.938,32.371,91.919)
C5: (93.352,33.198,92.889)
O3': (93.301,27.973,89.347)
OP1: (89.467,27.869,93.492)
OP2: (88.548,30.136,92.770)
C4: (94.328,34.182,92.550)
O5': (90.420,29.056,91.530)
C3': (92.964,29.229,89.935)
C1': (92.969,31.574,89.577)
O4': (91.664,31.105,89.875)
C5': (90.358,29.057,90.097)
P: (89.113,28.814,92.416)
O2: (94.848,33.525,89.187)
C4': (91.589,29.708,89.500)
C2': (93.845,30.337,89.360)
O2': (94.035,30.185,87.965)
N1: (93.433,32.473,90.650)
N3: (94.825,34.288,91.318)
N4: (94.770,35.037,93.476)
C6: (92.938,32.371,91.919)
C5: (93.352,33.198,92.889)
O3': (93.301,27.973,89.347)
Image (generated by PyMOL):