Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:941:939
Extra
PDB:
ATOM 1 O3' C A 40 94.023 23.219 92.153 1.00 87.21 O
ATOM 2 P C A 41 92.849 22.146 91.920 1.00 88.30 P
ATOM 3 OP1 C A 41 93.327 21.117 90.959 1.00 88.12 O
ATOM 4 OP2 C A 41 91.605 22.904 91.631 1.00 88.94 O
ATOM 5 O5' C A 41 92.703 21.434 93.335 1.00 87.59 O
ATOM 6 C5' C A 41 91.539 20.675 93.651 1.00 86.36 C
ATOM 7 C4' C A 41 91.423 20.491 95.140 1.00 86.33 C
ATOM 8 O4' C A 41 91.578 21.760 95.820 1.00 87.27 O
ATOM 9 C3' C A 41 90.057 19.996 95.558 1.00 86.50 C
ATOM 10 O3' C A 41 90.004 18.591 95.436 1.00 86.21 O
ATOM 11 C2' C A 41 89.941 20.489 96.990 1.00 87.74 C
ATOM 12 O2' C A 41 90.625 19.659 97.907 1.00 89.70 O
ATOM 13 C1' C A 41 90.654 21.843 96.897 1.00 88.54 C
ATOM 14 N1 C A 41 89.782 23.025 96.676 1.00 90.05 N
ATOM 15 C2 C A 41 88.715 23.288 97.572 1.00 90.57 C
ATOM 16 O2 C A 41 88.493 22.503 98.507 1.00 91.06 O
ATOM 17 N3 C A 41 87.958 24.396 97.385 1.00 90.71 N
ATOM 18 C4 C A 41 88.218 25.220 96.363 1.00 90.97 C
ATOM 19 N4 C A 41 87.463 26.316 96.232 1.00 91.91 N
ATOM 20 C5 C A 41 89.269 24.964 95.433 1.00 89.92 C
ATOM 21 C6 C A 41 90.015 23.871 95.624 1.00 89.96 C
ATOM 22 P G A 42 89.245 17.946 94.186 1.00 86.24 P
ATOM 23 OP1 G A 42 89.036 16.502 94.458 1.00 87.55 O
ATOM 24 OP2 G A 42 89.945 18.361 92.941 1.00 85.20 O
ATOM 25 O5' G A 42 87.828 18.662 94.248 1.00 85.63 O
TER
ATOM 1 O3' U B 38 88.082 28.143 91.349 1.00 80.68 O
ATOM 2 P C B 39 89.144 28.837 92.339 1.00 80.23 P
ATOM 3 OP1 C B 39 89.421 27.896 93.438 1.00 81.78 O
ATOM 4 OP2 C B 39 88.602 30.180 92.653 1.00 80.26 O
ATOM 5 O5' C B 39 90.483 29.027 91.492 1.00 82.46 O
ATOM 6 C5' C B 39 90.451 29.076 90.059 1.00 83.62 C
ATOM 7 C4' C B 39 91.695 29.741 89.505 1.00 84.85 C
ATOM 8 O4' C B 39 91.775 31.127 89.919 1.00 85.03 O
ATOM 9 C3' C B 39 93.071 29.254 89.931 1.00 84.52 C
ATOM 10 O3' C B 39 93.417 28.019 89.312 1.00 85.39 O
ATOM 11 C2' C B 39 93.951 30.370 89.370 1.00 84.27 C
ATOM 12 O2' C B 39 94.159 30.227 87.979 1.00 83.77 O
ATOM 13 C1' C B 39 93.069 31.604 89.589 1.00 83.76 C
ATOM 14 N1 C B 39 93.558 32.518 90.635 1.00 83.31 N
ATOM 15 C2 C B 39 94.610 33.396 90.320 1.00 83.54 C
ATOM 16 O2 C B 39 95.081 33.388 89.173 1.00 84.57 O
ATOM 17 N3 C B 39 95.085 34.229 91.268 1.00 83.74 N
ATOM 18 C4 C B 39 94.553 34.219 92.489 1.00 83.52 C
ATOM 19 N4 C B 39 95.061 35.057 93.394 1.00 83.13 N
ATOM 20 C5 C B 39 93.477 33.347 92.837 1.00 84.16 C
ATOM 21 C6 C B 39 93.016 32.520 91.889 1.00 83.47 C
ATOM 22 P C B 40 94.780 27.266 89.724 1.00 85.31 P
ATOM 23 OP1 C B 40 95.881 28.262 89.823 1.00 84.87 O
ATOM 24 OP2 C B 40 94.929 26.106 88.807 1.00 85.55 O
ATOM 25 O5' C B 40 94.508 26.704 91.193 1.00 86.51 O
TER
ATOM 2 P C A 41 92.849 22.146 91.920 1.00 88.30 P
ATOM 3 OP1 C A 41 93.327 21.117 90.959 1.00 88.12 O
ATOM 4 OP2 C A 41 91.605 22.904 91.631 1.00 88.94 O
ATOM 5 O5' C A 41 92.703 21.434 93.335 1.00 87.59 O
ATOM 6 C5' C A 41 91.539 20.675 93.651 1.00 86.36 C
ATOM 7 C4' C A 41 91.423 20.491 95.140 1.00 86.33 C
ATOM 8 O4' C A 41 91.578 21.760 95.820 1.00 87.27 O
ATOM 9 C3' C A 41 90.057 19.996 95.558 1.00 86.50 C
ATOM 10 O3' C A 41 90.004 18.591 95.436 1.00 86.21 O
ATOM 11 C2' C A 41 89.941 20.489 96.990 1.00 87.74 C
ATOM 12 O2' C A 41 90.625 19.659 97.907 1.00 89.70 O
ATOM 13 C1' C A 41 90.654 21.843 96.897 1.00 88.54 C
ATOM 14 N1 C A 41 89.782 23.025 96.676 1.00 90.05 N
ATOM 15 C2 C A 41 88.715 23.288 97.572 1.00 90.57 C
ATOM 16 O2 C A 41 88.493 22.503 98.507 1.00 91.06 O
ATOM 17 N3 C A 41 87.958 24.396 97.385 1.00 90.71 N
ATOM 18 C4 C A 41 88.218 25.220 96.363 1.00 90.97 C
ATOM 19 N4 C A 41 87.463 26.316 96.232 1.00 91.91 N
ATOM 20 C5 C A 41 89.269 24.964 95.433 1.00 89.92 C
ATOM 21 C6 C A 41 90.015 23.871 95.624 1.00 89.96 C
ATOM 22 P G A 42 89.245 17.946 94.186 1.00 86.24 P
ATOM 23 OP1 G A 42 89.036 16.502 94.458 1.00 87.55 O
ATOM 24 OP2 G A 42 89.945 18.361 92.941 1.00 85.20 O
ATOM 25 O5' G A 42 87.828 18.662 94.248 1.00 85.63 O
TER
ATOM 1 O3' U B 38 88.082 28.143 91.349 1.00 80.68 O
ATOM 2 P C B 39 89.144 28.837 92.339 1.00 80.23 P
ATOM 3 OP1 C B 39 89.421 27.896 93.438 1.00 81.78 O
ATOM 4 OP2 C B 39 88.602 30.180 92.653 1.00 80.26 O
ATOM 5 O5' C B 39 90.483 29.027 91.492 1.00 82.46 O
ATOM 6 C5' C B 39 90.451 29.076 90.059 1.00 83.62 C
ATOM 7 C4' C B 39 91.695 29.741 89.505 1.00 84.85 C
ATOM 8 O4' C B 39 91.775 31.127 89.919 1.00 85.03 O
ATOM 9 C3' C B 39 93.071 29.254 89.931 1.00 84.52 C
ATOM 10 O3' C B 39 93.417 28.019 89.312 1.00 85.39 O
ATOM 11 C2' C B 39 93.951 30.370 89.370 1.00 84.27 C
ATOM 12 O2' C B 39 94.159 30.227 87.979 1.00 83.77 O
ATOM 13 C1' C B 39 93.069 31.604 89.589 1.00 83.76 C
ATOM 14 N1 C B 39 93.558 32.518 90.635 1.00 83.31 N
ATOM 15 C2 C B 39 94.610 33.396 90.320 1.00 83.54 C
ATOM 16 O2 C B 39 95.081 33.388 89.173 1.00 84.57 O
ATOM 17 N3 C B 39 95.085 34.229 91.268 1.00 83.74 N
ATOM 18 C4 C B 39 94.553 34.219 92.489 1.00 83.52 C
ATOM 19 N4 C B 39 95.061 35.057 93.394 1.00 83.13 N
ATOM 20 C5 C B 39 93.477 33.347 92.837 1.00 84.16 C
ATOM 21 C6 C B 39 93.016 32.520 91.889 1.00 83.47 C
ATOM 22 P C B 40 94.780 27.266 89.724 1.00 85.31 P
ATOM 23 OP1 C B 40 95.881 28.262 89.823 1.00 84.87 O
ATOM 24 OP2 C B 40 94.929 26.106 88.807 1.00 85.55 O
ATOM 25 O5' C B 40 94.508 26.704 91.193 1.00 86.51 O
TER
Atoms:
C2: (88.715,23.288,97.572)
OP1: (93.327,21.117,90.959)
OP2: (91.605,22.904,91.631)
C4: (88.218,25.220,96.363)
O5': (92.703,21.434,93.335)
C3': (90.057,19.996,95.558)
C1': (90.654,21.843,96.897)
O4': (91.578,21.760,95.820)
C5': (91.539,20.675,93.651)
P: (92.849,22.146,91.920)
O2: (88.493,22.503,98.507)
C4': (91.423,20.491,95.140)
C2': (89.941,20.489,96.990)
O2': (90.625,19.659,97.907)
N1: (89.782,23.025,96.676)
N3: (87.958,24.396,97.385)
N4: (87.463,26.316,96.232)
C6: (90.015,23.871,95.624)
C5: (89.269,24.964,95.433)
O3': (90.004,18.591,95.436)
OP1: (93.327,21.117,90.959)
OP2: (91.605,22.904,91.631)
C4: (88.218,25.220,96.363)
O5': (92.703,21.434,93.335)
C3': (90.057,19.996,95.558)
C1': (90.654,21.843,96.897)
O4': (91.578,21.760,95.820)
C5': (91.539,20.675,93.651)
P: (92.849,22.146,91.920)
O2: (88.493,22.503,98.507)
C4': (91.423,20.491,95.140)
C2': (89.941,20.489,96.990)
O2': (90.625,19.659,97.907)
N1: (89.782,23.025,96.676)
N3: (87.958,24.396,97.385)
N4: (87.463,26.316,96.232)
C6: (90.015,23.871,95.624)
C5: (89.269,24.964,95.433)
O3': (90.004,18.591,95.436)
C2: (94.610,33.396,90.320)
OP1: (89.421,27.896,93.438)
OP2: (88.602,30.180,92.653)
C4: (94.553,34.219,92.489)
O5': (90.483,29.027,91.492)
C3': (93.071,29.254,89.931)
C1': (93.069,31.604,89.589)
O4': (91.775,31.127,89.919)
C5': (90.451,29.076,90.059)
P: (89.144,28.837,92.339)
O2: (95.081,33.388,89.173)
C4': (91.695,29.741,89.505)
C2': (93.951,30.370,89.370)
O2': (94.159,30.227,87.979)
N1: (93.558,32.518,90.635)
N3: (95.085,34.229,91.268)
N4: (95.061,35.057,93.394)
C6: (93.016,32.520,91.889)
C5: (93.477,33.347,92.837)
O3': (93.417,28.019,89.312)
OP1: (89.421,27.896,93.438)
OP2: (88.602,30.180,92.653)
C4: (94.553,34.219,92.489)
O5': (90.483,29.027,91.492)
C3': (93.071,29.254,89.931)
C1': (93.069,31.604,89.589)
O4': (91.775,31.127,89.919)
C5': (90.451,29.076,90.059)
P: (89.144,28.837,92.339)
O2: (95.081,33.388,89.173)
C4': (91.695,29.741,89.505)
C2': (93.951,30.370,89.370)
O2': (94.159,30.227,87.979)
N1: (93.558,32.518,90.635)
N3: (95.085,34.229,91.268)
N4: (95.061,35.057,93.394)
C6: (93.016,32.520,91.889)
C5: (93.477,33.347,92.837)
O3': (93.417,28.019,89.312)
Image (generated by PyMOL):