Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5O:E62:E61
Extra
PDB:
ATOM 1 O3' A A 61 -11.011 18.786 118.064 1.00 98.37 O
ATOM 2 P C A 62 -12.223 17.838 118.534 1.00 93.11 P
ATOM 3 OP1 C A 62 -13.487 18.513 118.150 1.00 99.39 O
ATOM 4 OP2 C A 62 -11.997 17.455 119.951 1.00 95.44 O
ATOM 5 O5' C A 62 -12.068 16.530 117.640 1.00 89.60 O
ATOM 6 C5' C A 62 -12.687 16.442 116.362 1.00 82.40 C
ATOM 7 C4' C A 62 -12.588 15.032 115.834 1.00 85.69 C
ATOM 8 O4' C A 62 -11.198 14.716 115.558 1.00 88.73 O
ATOM 9 C3' C A 62 -13.030 13.950 116.803 1.00 85.69 C
ATOM 10 O3' C A 62 -14.437 13.770 116.766 1.00 91.94 O
ATOM 11 C2' C A 62 -12.284 12.733 116.276 1.00 88.89 C
ATOM 12 O2' C A 62 -12.899 12.166 115.138 1.00 75.93 O
ATOM 13 C1' C A 62 -10.943 13.359 115.886 1.00 88.18 C
ATOM 14 N1 C A 62 -9.966 13.332 116.986 1.00 84.90 N
ATOM 15 C2 C A 62 -9.241 12.160 117.219 1.00 84.67 C
ATOM 16 O2 C A 62 -9.436 11.176 116.485 1.00 84.30 O
ATOM 17 N3 C A 62 -8.348 12.128 118.237 1.00 84.94 N
ATOM 18 C4 C A 62 -8.170 13.208 119.003 1.00 85.62 C
ATOM 19 N4 C A 62 -7.282 13.132 119.998 1.00 84.53 N
ATOM 20 C5 C A 62 -8.894 14.415 118.784 1.00 86.00 C
ATOM 21 C6 C A 62 -9.773 14.433 117.774 1.00 84.87 C
ATOM 22 P C A 63 -15.218 13.357 118.106 1.00 94.68 P
ATOM 23 OP1 C A 63 -16.674 13.414 117.826 1.00107.97 O
ATOM 24 OP2 C A 63 -14.653 14.163 119.216 1.00102.09 O
ATOM 25 O5' C A 63 -14.805 11.837 118.333 1.00 93.27 O
TER
ATOM 1 O3' U B 60 -6.247 18.811 121.684 1.00 87.73 O
ATOM 2 P A B 61 -6.959 17.401 121.383 1.00 81.61 P
ATOM 3 OP1 A B 61 -7.743 17.014 122.579 1.00 83.17 O
ATOM 4 OP2 A B 61 -5.945 16.466 120.841 1.00 98.91 O
ATOM 5 O5' A B 61 -7.988 17.745 120.216 1.00 92.66 O
ATOM 6 C5' A B 61 -8.343 19.097 119.918 1.00 84.08 C
ATOM 7 C4' A B 61 -8.662 19.234 118.447 1.00 90.42 C
ATOM 8 O4' A B 61 -7.461 18.966 117.676 1.00 87.87 O
ATOM 9 C3' A B 61 -9.698 18.248 117.926 1.00 90.89 C
ATOM 10 O3' A B 61 -11.011 18.786 118.064 1.00 98.37 O
ATOM 11 C2' A B 61 -9.310 18.107 116.459 1.00 95.08 C
ATOM 12 O2' A B 61 -9.797 19.167 115.661 1.00 98.38 O
ATOM 13 C1' A B 61 -7.783 18.184 116.537 1.00 88.00 C
ATOM 14 N9 A B 61 -7.130 16.882 116.685 1.00 80.24 N
ATOM 15 C8 A B 61 -6.273 16.492 117.684 1.00 80.11 C
ATOM 16 N7 A B 61 -5.842 15.261 117.564 1.00 80.51 N
ATOM 17 C5 A B 61 -6.455 14.806 116.406 1.00 78.93 C
ATOM 18 C6 A B 61 -6.409 13.572 115.736 1.00 79.63 C
ATOM 19 N6 A B 61 -5.688 12.527 116.153 1.00 78.88 N
ATOM 20 N1 A B 61 -7.139 13.445 114.607 1.00 79.07 N
ATOM 21 C2 A B 61 -7.862 14.492 114.192 1.00 79.37 C
ATOM 22 N3 A B 61 -7.987 15.701 114.735 1.00 78.30 N
ATOM 23 C4 A B 61 -7.250 15.795 115.853 1.00 78.30 C
ATOM 24 P C B 62 -12.223 17.838 118.534 1.00 93.11 P
ATOM 25 OP1 C B 62 -13.487 18.513 118.150 1.00 99.39 O
ATOM 26 OP2 C B 62 -11.997 17.455 119.951 1.00 95.44 O
ATOM 27 O5' C B 62 -12.068 16.530 117.640 1.00 89.60 O
TER
ATOM 2 P C A 62 -12.223 17.838 118.534 1.00 93.11 P
ATOM 3 OP1 C A 62 -13.487 18.513 118.150 1.00 99.39 O
ATOM 4 OP2 C A 62 -11.997 17.455 119.951 1.00 95.44 O
ATOM 5 O5' C A 62 -12.068 16.530 117.640 1.00 89.60 O
ATOM 6 C5' C A 62 -12.687 16.442 116.362 1.00 82.40 C
ATOM 7 C4' C A 62 -12.588 15.032 115.834 1.00 85.69 C
ATOM 8 O4' C A 62 -11.198 14.716 115.558 1.00 88.73 O
ATOM 9 C3' C A 62 -13.030 13.950 116.803 1.00 85.69 C
ATOM 10 O3' C A 62 -14.437 13.770 116.766 1.00 91.94 O
ATOM 11 C2' C A 62 -12.284 12.733 116.276 1.00 88.89 C
ATOM 12 O2' C A 62 -12.899 12.166 115.138 1.00 75.93 O
ATOM 13 C1' C A 62 -10.943 13.359 115.886 1.00 88.18 C
ATOM 14 N1 C A 62 -9.966 13.332 116.986 1.00 84.90 N
ATOM 15 C2 C A 62 -9.241 12.160 117.219 1.00 84.67 C
ATOM 16 O2 C A 62 -9.436 11.176 116.485 1.00 84.30 O
ATOM 17 N3 C A 62 -8.348 12.128 118.237 1.00 84.94 N
ATOM 18 C4 C A 62 -8.170 13.208 119.003 1.00 85.62 C
ATOM 19 N4 C A 62 -7.282 13.132 119.998 1.00 84.53 N
ATOM 20 C5 C A 62 -8.894 14.415 118.784 1.00 86.00 C
ATOM 21 C6 C A 62 -9.773 14.433 117.774 1.00 84.87 C
ATOM 22 P C A 63 -15.218 13.357 118.106 1.00 94.68 P
ATOM 23 OP1 C A 63 -16.674 13.414 117.826 1.00107.97 O
ATOM 24 OP2 C A 63 -14.653 14.163 119.216 1.00102.09 O
ATOM 25 O5' C A 63 -14.805 11.837 118.333 1.00 93.27 O
TER
ATOM 1 O3' U B 60 -6.247 18.811 121.684 1.00 87.73 O
ATOM 2 P A B 61 -6.959 17.401 121.383 1.00 81.61 P
ATOM 3 OP1 A B 61 -7.743 17.014 122.579 1.00 83.17 O
ATOM 4 OP2 A B 61 -5.945 16.466 120.841 1.00 98.91 O
ATOM 5 O5' A B 61 -7.988 17.745 120.216 1.00 92.66 O
ATOM 6 C5' A B 61 -8.343 19.097 119.918 1.00 84.08 C
ATOM 7 C4' A B 61 -8.662 19.234 118.447 1.00 90.42 C
ATOM 8 O4' A B 61 -7.461 18.966 117.676 1.00 87.87 O
ATOM 9 C3' A B 61 -9.698 18.248 117.926 1.00 90.89 C
ATOM 10 O3' A B 61 -11.011 18.786 118.064 1.00 98.37 O
ATOM 11 C2' A B 61 -9.310 18.107 116.459 1.00 95.08 C
ATOM 12 O2' A B 61 -9.797 19.167 115.661 1.00 98.38 O
ATOM 13 C1' A B 61 -7.783 18.184 116.537 1.00 88.00 C
ATOM 14 N9 A B 61 -7.130 16.882 116.685 1.00 80.24 N
ATOM 15 C8 A B 61 -6.273 16.492 117.684 1.00 80.11 C
ATOM 16 N7 A B 61 -5.842 15.261 117.564 1.00 80.51 N
ATOM 17 C5 A B 61 -6.455 14.806 116.406 1.00 78.93 C
ATOM 18 C6 A B 61 -6.409 13.572 115.736 1.00 79.63 C
ATOM 19 N6 A B 61 -5.688 12.527 116.153 1.00 78.88 N
ATOM 20 N1 A B 61 -7.139 13.445 114.607 1.00 79.07 N
ATOM 21 C2 A B 61 -7.862 14.492 114.192 1.00 79.37 C
ATOM 22 N3 A B 61 -7.987 15.701 114.735 1.00 78.30 N
ATOM 23 C4 A B 61 -7.250 15.795 115.853 1.00 78.30 C
ATOM 24 P C B 62 -12.223 17.838 118.534 1.00 93.11 P
ATOM 25 OP1 C B 62 -13.487 18.513 118.150 1.00 99.39 O
ATOM 26 OP2 C B 62 -11.997 17.455 119.951 1.00 95.44 O
ATOM 27 O5' C B 62 -12.068 16.530 117.640 1.00 89.60 O
TER
Atoms:
C2: (-9.241,12.160,117.219)
OP1: (-13.487,18.513,118.150)
OP2: (-11.997,17.455,119.951)
C4: (-8.170,13.208,119.003)
O5': (-12.068,16.530,117.640)
C3': (-13.030,13.950,116.803)
C1': (-10.943,13.359,115.886)
O4': (-11.198,14.716,115.558)
C5': (-12.687,16.442,116.362)
P: (-12.223,17.838,118.534)
O2: (-9.436,11.176,116.485)
C4': (-12.588,15.032,115.834)
C2': (-12.284,12.733,116.276)
O2': (-12.899,12.166,115.138)
N1: (-9.966,13.332,116.986)
N3: (-8.348,12.128,118.237)
N4: (-7.282,13.132,119.998)
C6: (-9.773,14.433,117.774)
C5: (-8.894,14.415,118.784)
O3': (-14.437,13.770,116.766)
OP1: (-13.487,18.513,118.150)
OP2: (-11.997,17.455,119.951)
C4: (-8.170,13.208,119.003)
O5': (-12.068,16.530,117.640)
C3': (-13.030,13.950,116.803)
C1': (-10.943,13.359,115.886)
O4': (-11.198,14.716,115.558)
C5': (-12.687,16.442,116.362)
P: (-12.223,17.838,118.534)
O2: (-9.436,11.176,116.485)
C4': (-12.588,15.032,115.834)
C2': (-12.284,12.733,116.276)
O2': (-12.899,12.166,115.138)
N1: (-9.966,13.332,116.986)
N3: (-8.348,12.128,118.237)
N4: (-7.282,13.132,119.998)
C6: (-9.773,14.433,117.774)
C5: (-8.894,14.415,118.784)
O3': (-14.437,13.770,116.766)
OP1: (-7.743,17.014,122.579)
OP2: (-5.945,16.466,120.841)
C3': (-9.698,18.248,117.926)
C1': (-7.783,18.184,116.537)
C5': (-8.343,19.097,119.918)
O4': (-7.461,18.966,117.676)
C8: (-6.273,16.492,117.684)
O2': (-9.797,19.167,115.661)
C6: (-6.409,13.572,115.736)
C5: (-6.455,14.806,116.406)
C4: (-7.250,15.795,115.853)
P: (-6.959,17.401,121.383)
C4': (-8.662,19.234,118.447)
C2': (-9.310,18.107,116.459)
C2: (-7.862,14.492,114.192)
N1: (-7.139,13.445,114.607)
N3: (-7.987,15.701,114.735)
N6: (-5.688,12.527,116.153)
N7: (-5.842,15.261,117.564)
N9: (-7.130,16.882,116.685)
O5': (-7.988,17.745,120.216)
O3': (-11.011,18.786,118.064)
OP2: (-5.945,16.466,120.841)
C3': (-9.698,18.248,117.926)
C1': (-7.783,18.184,116.537)
C5': (-8.343,19.097,119.918)
O4': (-7.461,18.966,117.676)
C8: (-6.273,16.492,117.684)
O2': (-9.797,19.167,115.661)
C6: (-6.409,13.572,115.736)
C5: (-6.455,14.806,116.406)
C4: (-7.250,15.795,115.853)
P: (-6.959,17.401,121.383)
C4': (-8.662,19.234,118.447)
C2': (-9.310,18.107,116.459)
C2: (-7.862,14.492,114.192)
N1: (-7.139,13.445,114.607)
N3: (-7.987,15.701,114.735)
N6: (-5.688,12.527,116.153)
N7: (-5.842,15.261,117.564)
N9: (-7.130,16.882,116.685)
O5': (-7.988,17.745,120.216)
O3': (-11.011,18.786,118.064)
Image (generated by PyMOL):