Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5K:E62:E61
Extra
PDB:
ATOM 1 O3' A A 61 -17.362 18.717 114.699 1.00 96.23 O
ATOM 2 P C A 62 -18.612 17.845 115.213 1.00 95.27 P
ATOM 3 OP1 C A 62 -19.837 18.583 114.822 1.00 98.89 O
ATOM 4 OP2 C A 62 -18.399 17.483 116.640 1.00 69.87 O
ATOM 5 O5' C A 62 -18.532 16.513 114.342 1.00 87.14 O
ATOM 6 C5' C A 62 -18.983 16.501 112.991 1.00 96.00 C
ATOM 7 C4' C A 62 -18.946 15.098 112.435 1.00 91.21 C
ATOM 8 O4' C A 62 -17.580 14.707 112.146 1.00 94.58 O
ATOM 9 C3' C A 62 -19.451 14.018 113.373 1.00 93.87 C
ATOM 10 O3' C A 62 -20.866 13.935 113.348 1.00 95.74 O
ATOM 11 C2' C A 62 -18.787 12.774 112.803 1.00 95.71 C
ATOM 12 O2' C A 62 -19.437 12.281 111.650 1.00 90.32 O
ATOM 13 C1' C A 62 -17.411 13.324 112.423 1.00 95.14 C
ATOM 14 N1 C A 62 -16.443 13.196 113.521 1.00 95.88 N
ATOM 15 C2 C A 62 -15.771 11.982 113.696 1.00 94.58 C
ATOM 16 O2 C A 62 -16.000 11.049 112.910 1.00 90.50 O
ATOM 17 N3 C A 62 -14.891 11.857 114.715 1.00 97.76 N
ATOM 18 C4 C A 62 -14.672 12.888 115.538 1.00100.22 C
ATOM 19 N4 C A 62 -13.798 12.724 116.535 1.00101.56 N
ATOM 20 C5 C A 62 -15.340 14.136 115.378 1.00 97.68 C
ATOM 21 C6 C A 62 -16.207 14.245 114.366 1.00 95.93 C
ATOM 22 P C A 63 -21.651 13.469 114.665 1.00107.96 P
ATOM 23 OP1 C A 63 -23.108 13.532 114.385 1.00115.36 O
ATOM 24 OP2 C A 63 -21.091 14.233 115.808 1.00104.05 O
ATOM 25 O5' C A 63 -21.230 11.942 114.822 1.00 96.96 O
TER
ATOM 1 O3' U B 60 -12.218 17.596 119.247 1.00 95.63 O
ATOM 2 P A B 61 -13.387 17.153 118.220 1.00 88.07 P
ATOM 3 OP1 A B 61 -14.567 16.841 119.055 1.00 79.44 O
ATOM 4 OP2 A B 61 -12.878 16.133 117.276 1.00 88.75 O
ATOM 5 O5' A B 61 -13.756 18.466 117.400 1.00 88.93 O
ATOM 6 C5' A B 61 -15.078 18.634 116.903 1.00 85.35 C
ATOM 7 C4' A B 61 -15.065 18.938 115.424 1.00 89.37 C
ATOM 8 O4' A B 61 -13.781 18.616 114.830 1.00 95.40 O
ATOM 9 C3' A B 61 -16.070 18.124 114.630 1.00 95.80 C
ATOM 10 O3' A B 61 -17.362 18.717 114.699 1.00 96.23 O
ATOM 11 C2' A B 61 -15.474 18.157 113.228 1.00 95.59 C
ATOM 12 O2' A B 61 -15.752 19.369 112.557 1.00100.24 O
ATOM 13 C1' A B 61 -13.975 18.075 113.532 1.00 89.89 C
ATOM 14 N9 A B 61 -13.431 16.716 113.529 1.00 93.28 N
ATOM 15 C8 A B 61 -12.642 16.153 114.501 1.00 91.78 C
ATOM 16 N7 A B 61 -12.296 14.914 114.255 1.00 88.95 N
ATOM 17 C5 A B 61 -12.893 14.639 113.035 1.00 90.29 C
ATOM 18 C6 A B 61 -12.903 13.489 112.233 1.00 90.75 C
ATOM 19 N6 A B 61 -12.272 12.357 112.555 1.00 87.38 N
ATOM 20 N1 A B 61 -13.593 13.540 111.074 1.00 92.02 N
ATOM 21 C2 A B 61 -14.225 14.681 110.754 1.00 96.49 C
ATOM 22 N3 A B 61 -14.289 15.830 111.427 1.00 91.70 N
ATOM 23 C4 A B 61 -13.595 15.742 112.573 1.00 91.77 C
ATOM 24 P C B 62 -18.612 17.845 115.213 1.00 95.27 P
ATOM 25 OP1 C B 62 -19.837 18.583 114.822 1.00 98.89 O
ATOM 26 OP2 C B 62 -18.399 17.483 116.640 1.00 69.87 O
ATOM 27 O5' C B 62 -18.532 16.513 114.342 1.00 87.14 O
TER
ATOM 2 P C A 62 -18.612 17.845 115.213 1.00 95.27 P
ATOM 3 OP1 C A 62 -19.837 18.583 114.822 1.00 98.89 O
ATOM 4 OP2 C A 62 -18.399 17.483 116.640 1.00 69.87 O
ATOM 5 O5' C A 62 -18.532 16.513 114.342 1.00 87.14 O
ATOM 6 C5' C A 62 -18.983 16.501 112.991 1.00 96.00 C
ATOM 7 C4' C A 62 -18.946 15.098 112.435 1.00 91.21 C
ATOM 8 O4' C A 62 -17.580 14.707 112.146 1.00 94.58 O
ATOM 9 C3' C A 62 -19.451 14.018 113.373 1.00 93.87 C
ATOM 10 O3' C A 62 -20.866 13.935 113.348 1.00 95.74 O
ATOM 11 C2' C A 62 -18.787 12.774 112.803 1.00 95.71 C
ATOM 12 O2' C A 62 -19.437 12.281 111.650 1.00 90.32 O
ATOM 13 C1' C A 62 -17.411 13.324 112.423 1.00 95.14 C
ATOM 14 N1 C A 62 -16.443 13.196 113.521 1.00 95.88 N
ATOM 15 C2 C A 62 -15.771 11.982 113.696 1.00 94.58 C
ATOM 16 O2 C A 62 -16.000 11.049 112.910 1.00 90.50 O
ATOM 17 N3 C A 62 -14.891 11.857 114.715 1.00 97.76 N
ATOM 18 C4 C A 62 -14.672 12.888 115.538 1.00100.22 C
ATOM 19 N4 C A 62 -13.798 12.724 116.535 1.00101.56 N
ATOM 20 C5 C A 62 -15.340 14.136 115.378 1.00 97.68 C
ATOM 21 C6 C A 62 -16.207 14.245 114.366 1.00 95.93 C
ATOM 22 P C A 63 -21.651 13.469 114.665 1.00107.96 P
ATOM 23 OP1 C A 63 -23.108 13.532 114.385 1.00115.36 O
ATOM 24 OP2 C A 63 -21.091 14.233 115.808 1.00104.05 O
ATOM 25 O5' C A 63 -21.230 11.942 114.822 1.00 96.96 O
TER
ATOM 1 O3' U B 60 -12.218 17.596 119.247 1.00 95.63 O
ATOM 2 P A B 61 -13.387 17.153 118.220 1.00 88.07 P
ATOM 3 OP1 A B 61 -14.567 16.841 119.055 1.00 79.44 O
ATOM 4 OP2 A B 61 -12.878 16.133 117.276 1.00 88.75 O
ATOM 5 O5' A B 61 -13.756 18.466 117.400 1.00 88.93 O
ATOM 6 C5' A B 61 -15.078 18.634 116.903 1.00 85.35 C
ATOM 7 C4' A B 61 -15.065 18.938 115.424 1.00 89.37 C
ATOM 8 O4' A B 61 -13.781 18.616 114.830 1.00 95.40 O
ATOM 9 C3' A B 61 -16.070 18.124 114.630 1.00 95.80 C
ATOM 10 O3' A B 61 -17.362 18.717 114.699 1.00 96.23 O
ATOM 11 C2' A B 61 -15.474 18.157 113.228 1.00 95.59 C
ATOM 12 O2' A B 61 -15.752 19.369 112.557 1.00100.24 O
ATOM 13 C1' A B 61 -13.975 18.075 113.532 1.00 89.89 C
ATOM 14 N9 A B 61 -13.431 16.716 113.529 1.00 93.28 N
ATOM 15 C8 A B 61 -12.642 16.153 114.501 1.00 91.78 C
ATOM 16 N7 A B 61 -12.296 14.914 114.255 1.00 88.95 N
ATOM 17 C5 A B 61 -12.893 14.639 113.035 1.00 90.29 C
ATOM 18 C6 A B 61 -12.903 13.489 112.233 1.00 90.75 C
ATOM 19 N6 A B 61 -12.272 12.357 112.555 1.00 87.38 N
ATOM 20 N1 A B 61 -13.593 13.540 111.074 1.00 92.02 N
ATOM 21 C2 A B 61 -14.225 14.681 110.754 1.00 96.49 C
ATOM 22 N3 A B 61 -14.289 15.830 111.427 1.00 91.70 N
ATOM 23 C4 A B 61 -13.595 15.742 112.573 1.00 91.77 C
ATOM 24 P C B 62 -18.612 17.845 115.213 1.00 95.27 P
ATOM 25 OP1 C B 62 -19.837 18.583 114.822 1.00 98.89 O
ATOM 26 OP2 C B 62 -18.399 17.483 116.640 1.00 69.87 O
ATOM 27 O5' C B 62 -18.532 16.513 114.342 1.00 87.14 O
TER
Atoms:
C2: (-15.771,11.982,113.696)
OP1: (-19.837,18.583,114.822)
OP2: (-18.399,17.483,116.640)
C4: (-14.672,12.888,115.538)
O5': (-18.532,16.513,114.342)
C3': (-19.451,14.018,113.373)
C1': (-17.411,13.324,112.423)
O4': (-17.580,14.707,112.146)
C5': (-18.983,16.501,112.991)
P: (-18.612,17.845,115.213)
O2: (-16.000,11.049,112.910)
C4': (-18.946,15.098,112.435)
C2': (-18.787,12.774,112.803)
O2': (-19.437,12.281,111.650)
N1: (-16.443,13.196,113.521)
N3: (-14.891,11.857,114.715)
N4: (-13.798,12.724,116.535)
C6: (-16.207,14.245,114.366)
C5: (-15.340,14.136,115.378)
O3': (-20.866,13.935,113.348)
OP1: (-19.837,18.583,114.822)
OP2: (-18.399,17.483,116.640)
C4: (-14.672,12.888,115.538)
O5': (-18.532,16.513,114.342)
C3': (-19.451,14.018,113.373)
C1': (-17.411,13.324,112.423)
O4': (-17.580,14.707,112.146)
C5': (-18.983,16.501,112.991)
P: (-18.612,17.845,115.213)
O2: (-16.000,11.049,112.910)
C4': (-18.946,15.098,112.435)
C2': (-18.787,12.774,112.803)
O2': (-19.437,12.281,111.650)
N1: (-16.443,13.196,113.521)
N3: (-14.891,11.857,114.715)
N4: (-13.798,12.724,116.535)
C6: (-16.207,14.245,114.366)
C5: (-15.340,14.136,115.378)
O3': (-20.866,13.935,113.348)
OP1: (-14.567,16.841,119.055)
OP2: (-12.878,16.133,117.276)
C3': (-16.070,18.124,114.630)
C1': (-13.975,18.075,113.532)
C5': (-15.078,18.634,116.903)
O4': (-13.781,18.616,114.830)
C8: (-12.642,16.153,114.501)
O2': (-15.752,19.369,112.557)
C6: (-12.903,13.489,112.233)
C5: (-12.893,14.639,113.035)
C4: (-13.595,15.742,112.573)
P: (-13.387,17.153,118.220)
C4': (-15.065,18.938,115.424)
C2': (-15.474,18.157,113.228)
C2: (-14.225,14.681,110.754)
N1: (-13.593,13.540,111.074)
N3: (-14.289,15.830,111.427)
N6: (-12.272,12.357,112.555)
N7: (-12.296,14.914,114.255)
N9: (-13.431,16.716,113.529)
O5': (-13.756,18.466,117.400)
O3': (-17.362,18.717,114.699)
OP2: (-12.878,16.133,117.276)
C3': (-16.070,18.124,114.630)
C1': (-13.975,18.075,113.532)
C5': (-15.078,18.634,116.903)
O4': (-13.781,18.616,114.830)
C8: (-12.642,16.153,114.501)
O2': (-15.752,19.369,112.557)
C6: (-12.903,13.489,112.233)
C5: (-12.893,14.639,113.035)
C4: (-13.595,15.742,112.573)
P: (-13.387,17.153,118.220)
C4': (-15.065,18.938,115.424)
C2': (-15.474,18.157,113.228)
C2: (-14.225,14.681,110.754)
N1: (-13.593,13.540,111.074)
N3: (-14.289,15.830,111.427)
N6: (-12.272,12.357,112.555)
N7: (-12.296,14.914,114.255)
N9: (-13.431,16.716,113.529)
O5': (-13.756,18.466,117.400)
O3': (-17.362,18.717,114.699)
Image (generated by PyMOL):