Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0232:0231
Extra
PDB:
ATOM 1 O3' A A 231 93.649 103.997 -1.262 1.00 62.70 O
ATOM 2 P C A 232 94.358 105.029 -2.264 1.00 64.16 P
ATOM 3 OP1 C A 232 95.549 104.335 -2.816 1.00 63.92 O
ATOM 4 OP2 C A 232 94.523 106.336 -1.586 1.00 63.99 O
ATOM 5 O5' C A 232 93.282 105.228 -3.416 1.00 63.21 O
ATOM 6 C5' C A 232 92.871 104.127 -4.243 1.00 65.07 C
ATOM 7 C4' C A 232 91.821 104.591 -5.217 1.00 65.47 C
ATOM 8 O4' C A 232 90.582 104.860 -4.507 1.00 65.83 O
ATOM 9 C3' C A 232 92.170 105.919 -5.855 1.00 65.42 C
ATOM 10 O3' C A 232 93.094 105.784 -6.917 1.00 65.76 O
ATOM 11 C2' C A 232 90.809 106.488 -6.224 1.00 64.66 C
ATOM 12 O2' C A 232 90.260 105.945 -7.401 1.00 64.88 O
ATOM 13 C1' C A 232 89.981 106.043 -5.017 1.00 64.10 C
ATOM 14 N1 C A 232 89.964 107.052 -3.941 1.00 62.19 N
ATOM 15 C2 C A 232 88.943 108.000 -3.924 1.00 60.93 C
ATOM 16 O2 C A 232 88.077 107.959 -4.802 1.00 61.25 O
ATOM 17 N3 C A 232 88.925 108.936 -2.955 1.00 60.90 N
ATOM 18 C4 C A 232 89.879 108.948 -2.025 1.00 61.87 C
ATOM 19 N4 C A 232 89.828 109.897 -1.090 1.00 62.90 N
ATOM 20 C5 C A 232 90.930 107.989 -2.012 1.00 62.28 C
ATOM 21 C6 C A 232 90.935 107.067 -2.977 1.00 61.82 C
ATOM 22 P C A 233 94.054 107.016 -7.272 1.00 65.23 P
ATOM 23 OP1 C A 233 95.016 106.566 -8.303 1.00 64.32 O
ATOM 24 OP2 C A 233 94.560 107.601 -6.005 1.00 65.05 O
ATOM 25 O5' C A 233 93.022 108.033 -7.918 1.00 63.56 O
TER
ATOM 1 O3' A B 230 92.799 107.664 3.546 1.00 55.98 O
ATOM 2 P A B 231 92.998 108.012 1.985 1.00 56.64 P
ATOM 3 OP1 A B 231 94.447 108.307 1.818 1.00 55.25 O
ATOM 4 OP2 A B 231 91.980 109.020 1.546 1.00 53.48 O
ATOM 5 O5' A B 231 92.657 106.641 1.247 1.00 56.60 O
ATOM 6 C5' A B 231 93.342 105.420 1.587 1.00 57.01 C
ATOM 7 C4' A B 231 92.663 104.244 0.924 1.00 58.66 C
ATOM 8 O4' A B 231 91.320 104.093 1.452 1.00 58.71 O
ATOM 9 C3' A B 231 92.461 104.380 -0.575 1.00 60.11 C
ATOM 10 O3' A B 231 93.649 103.997 -1.262 1.00 62.70 O
ATOM 11 C2' A B 231 91.288 103.439 -0.838 1.00 59.12 C
ATOM 12 O2' A B 231 91.665 102.078 -0.938 1.00 59.04 O
ATOM 13 C1' A B 231 90.452 103.630 0.432 1.00 57.07 C
ATOM 14 N9 A B 231 89.342 104.575 0.302 1.00 54.96 N
ATOM 15 C8 A B 231 89.395 105.944 0.189 1.00 54.36 C
ATOM 16 N7 A B 231 88.218 106.511 0.065 1.00 53.66 N
ATOM 17 C5 A B 231 87.329 105.447 0.102 1.00 53.51 C
ATOM 18 C6 A B 231 85.922 105.381 0.005 1.00 53.94 C
ATOM 19 N6 A B 231 85.133 106.444 -0.182 1.00 51.61 N
ATOM 20 N1 A B 231 85.346 104.161 0.099 1.00 54.94 N
ATOM 21 C2 A B 231 86.137 103.087 0.259 1.00 55.01 C
ATOM 22 N3 A B 231 87.467 103.021 0.346 1.00 53.91 N
ATOM 23 C4 A B 231 88.008 104.249 0.261 1.00 53.93 C
ATOM 24 P C B 232 94.358 105.029 -2.264 1.00 64.16 P
ATOM 25 OP1 C B 232 95.549 104.335 -2.816 1.00 63.92 O
ATOM 26 OP2 C B 232 94.523 106.336 -1.586 1.00 63.99 O
ATOM 27 O5' C B 232 93.282 105.228 -3.416 1.00 63.21 O
TER
ATOM 2 P C A 232 94.358 105.029 -2.264 1.00 64.16 P
ATOM 3 OP1 C A 232 95.549 104.335 -2.816 1.00 63.92 O
ATOM 4 OP2 C A 232 94.523 106.336 -1.586 1.00 63.99 O
ATOM 5 O5' C A 232 93.282 105.228 -3.416 1.00 63.21 O
ATOM 6 C5' C A 232 92.871 104.127 -4.243 1.00 65.07 C
ATOM 7 C4' C A 232 91.821 104.591 -5.217 1.00 65.47 C
ATOM 8 O4' C A 232 90.582 104.860 -4.507 1.00 65.83 O
ATOM 9 C3' C A 232 92.170 105.919 -5.855 1.00 65.42 C
ATOM 10 O3' C A 232 93.094 105.784 -6.917 1.00 65.76 O
ATOM 11 C2' C A 232 90.809 106.488 -6.224 1.00 64.66 C
ATOM 12 O2' C A 232 90.260 105.945 -7.401 1.00 64.88 O
ATOM 13 C1' C A 232 89.981 106.043 -5.017 1.00 64.10 C
ATOM 14 N1 C A 232 89.964 107.052 -3.941 1.00 62.19 N
ATOM 15 C2 C A 232 88.943 108.000 -3.924 1.00 60.93 C
ATOM 16 O2 C A 232 88.077 107.959 -4.802 1.00 61.25 O
ATOM 17 N3 C A 232 88.925 108.936 -2.955 1.00 60.90 N
ATOM 18 C4 C A 232 89.879 108.948 -2.025 1.00 61.87 C
ATOM 19 N4 C A 232 89.828 109.897 -1.090 1.00 62.90 N
ATOM 20 C5 C A 232 90.930 107.989 -2.012 1.00 62.28 C
ATOM 21 C6 C A 232 90.935 107.067 -2.977 1.00 61.82 C
ATOM 22 P C A 233 94.054 107.016 -7.272 1.00 65.23 P
ATOM 23 OP1 C A 233 95.016 106.566 -8.303 1.00 64.32 O
ATOM 24 OP2 C A 233 94.560 107.601 -6.005 1.00 65.05 O
ATOM 25 O5' C A 233 93.022 108.033 -7.918 1.00 63.56 O
TER
ATOM 1 O3' A B 230 92.799 107.664 3.546 1.00 55.98 O
ATOM 2 P A B 231 92.998 108.012 1.985 1.00 56.64 P
ATOM 3 OP1 A B 231 94.447 108.307 1.818 1.00 55.25 O
ATOM 4 OP2 A B 231 91.980 109.020 1.546 1.00 53.48 O
ATOM 5 O5' A B 231 92.657 106.641 1.247 1.00 56.60 O
ATOM 6 C5' A B 231 93.342 105.420 1.587 1.00 57.01 C
ATOM 7 C4' A B 231 92.663 104.244 0.924 1.00 58.66 C
ATOM 8 O4' A B 231 91.320 104.093 1.452 1.00 58.71 O
ATOM 9 C3' A B 231 92.461 104.380 -0.575 1.00 60.11 C
ATOM 10 O3' A B 231 93.649 103.997 -1.262 1.00 62.70 O
ATOM 11 C2' A B 231 91.288 103.439 -0.838 1.00 59.12 C
ATOM 12 O2' A B 231 91.665 102.078 -0.938 1.00 59.04 O
ATOM 13 C1' A B 231 90.452 103.630 0.432 1.00 57.07 C
ATOM 14 N9 A B 231 89.342 104.575 0.302 1.00 54.96 N
ATOM 15 C8 A B 231 89.395 105.944 0.189 1.00 54.36 C
ATOM 16 N7 A B 231 88.218 106.511 0.065 1.00 53.66 N
ATOM 17 C5 A B 231 87.329 105.447 0.102 1.00 53.51 C
ATOM 18 C6 A B 231 85.922 105.381 0.005 1.00 53.94 C
ATOM 19 N6 A B 231 85.133 106.444 -0.182 1.00 51.61 N
ATOM 20 N1 A B 231 85.346 104.161 0.099 1.00 54.94 N
ATOM 21 C2 A B 231 86.137 103.087 0.259 1.00 55.01 C
ATOM 22 N3 A B 231 87.467 103.021 0.346 1.00 53.91 N
ATOM 23 C4 A B 231 88.008 104.249 0.261 1.00 53.93 C
ATOM 24 P C B 232 94.358 105.029 -2.264 1.00 64.16 P
ATOM 25 OP1 C B 232 95.549 104.335 -2.816 1.00 63.92 O
ATOM 26 OP2 C B 232 94.523 106.336 -1.586 1.00 63.99 O
ATOM 27 O5' C B 232 93.282 105.228 -3.416 1.00 63.21 O
TER
Atoms:
C2: (88.943,108.000,-3.924)
OP1: (95.549,104.335,-2.816)
OP2: (94.523,106.336,-1.586)
C4: (89.879,108.948,-2.025)
O5': (93.282,105.228,-3.416)
C3': (92.170,105.919,-5.855)
C1': (89.981,106.043,-5.017)
O4': (90.582,104.860,-4.507)
C5': (92.871,104.127,-4.243)
P: (94.358,105.029,-2.264)
O2: (88.077,107.959,-4.802)
C4': (91.821,104.591,-5.217)
C2': (90.809,106.488,-6.224)
O2': (90.260,105.945,-7.401)
N1: (89.964,107.052,-3.941)
N3: (88.925,108.936,-2.955)
N4: (89.828,109.897,-1.090)
C6: (90.935,107.067,-2.977)
C5: (90.930,107.989,-2.012)
O3': (93.094,105.784,-6.917)
OP1: (95.549,104.335,-2.816)
OP2: (94.523,106.336,-1.586)
C4: (89.879,108.948,-2.025)
O5': (93.282,105.228,-3.416)
C3': (92.170,105.919,-5.855)
C1': (89.981,106.043,-5.017)
O4': (90.582,104.860,-4.507)
C5': (92.871,104.127,-4.243)
P: (94.358,105.029,-2.264)
O2: (88.077,107.959,-4.802)
C4': (91.821,104.591,-5.217)
C2': (90.809,106.488,-6.224)
O2': (90.260,105.945,-7.401)
N1: (89.964,107.052,-3.941)
N3: (88.925,108.936,-2.955)
N4: (89.828,109.897,-1.090)
C6: (90.935,107.067,-2.977)
C5: (90.930,107.989,-2.012)
O3': (93.094,105.784,-6.917)
OP1: (94.447,108.307,1.818)
OP2: (91.980,109.020,1.546)
C3': (92.461,104.380,-0.575)
C1': (90.452,103.630,0.432)
C5': (93.342,105.420,1.587)
O4': (91.320,104.093,1.452)
C8: (89.395,105.944,0.189)
O2': (91.665,102.078,-0.938)
C6: (85.922,105.381,0.005)
C5: (87.329,105.447,0.102)
C4: (88.008,104.249,0.261)
P: (92.998,108.012,1.985)
C4': (92.663,104.244,0.924)
C2': (91.288,103.439,-0.838)
C2: (86.137,103.087,0.259)
N1: (85.346,104.161,0.099)
N3: (87.467,103.021,0.346)
N6: (85.133,106.444,-0.182)
N7: (88.218,106.511,0.065)
N9: (89.342,104.575,0.302)
O5': (92.657,106.641,1.247)
O3': (93.649,103.997,-1.262)
OP2: (91.980,109.020,1.546)
C3': (92.461,104.380,-0.575)
C1': (90.452,103.630,0.432)
C5': (93.342,105.420,1.587)
O4': (91.320,104.093,1.452)
C8: (89.395,105.944,0.189)
O2': (91.665,102.078,-0.938)
C6: (85.922,105.381,0.005)
C5: (87.329,105.447,0.102)
C4: (88.008,104.249,0.261)
P: (92.998,108.012,1.985)
C4': (92.663,104.244,0.924)
C2': (91.288,103.439,-0.838)
C2: (86.137,103.087,0.259)
N1: (85.346,104.161,0.099)
N3: (87.467,103.021,0.346)
N6: (85.133,106.444,-0.182)
N7: (88.218,106.511,0.065)
N9: (89.342,104.575,0.302)
O5': (92.657,106.641,1.247)
O3': (93.649,103.997,-1.262)
Image (generated by PyMOL):