Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2J00:A342:A50
Extra
PDB:
ATOM 1 O3' G A 341 -9.133 45.630 123.441 1.00 35.18 O
ATOM 2 P C A 342 -9.123 44.836 122.033 1.00 53.47 P
ATOM 3 OP1 C A 342 -9.743 43.491 122.222 1.00 92.76 O
ATOM 4 OP2 C A 342 -7.783 44.945 121.396 1.00 94.36 O
ATOM 5 O5' C A 342 -10.104 45.699 121.137 1.00 38.19 O
ATOM 6 C5' C A 342 -11.514 45.459 121.162 1.00 37.11 C
ATOM 7 C4' C A 342 -11.924 44.743 119.904 1.00 36.21 C
ATOM 8 O4' C A 342 -12.245 43.372 120.232 1.00 37.15 O
ATOM 9 C3' C A 342 -13.166 45.283 119.225 1.00 35.80 C
ATOM 10 O3' C A 342 -12.839 46.323 118.333 1.00 34.87 O
ATOM 11 C2' C A 342 -13.687 44.071 118.485 1.00 36.20 C
ATOM 12 O2' C A 342 -12.972 43.853 117.284 1.00 37.83 O
ATOM 13 C1' C A 342 -13.365 42.956 119.479 1.00 37.31 C
ATOM 14 N1 C A 342 -14.469 42.732 120.421 1.00 29.88 N
ATOM 15 C2 C A 342 -15.659 42.159 119.950 1.00 31.07 C
ATOM 16 O2 C A 342 -15.750 41.848 118.741 1.00 32.47 O
ATOM 17 N3 C A 342 -16.682 41.960 120.819 1.00 32.94 N
ATOM 18 C4 C A 342 -16.548 42.311 122.102 1.00 33.23 C
ATOM 19 N4 C A 342 -17.585 42.107 122.921 1.00 32.74 N
ATOM 20 C5 C A 342 -15.347 42.891 122.602 1.00 31.02 C
ATOM 21 C6 C A 342 -14.345 43.081 121.738 1.00 29.22 C
ATOM 22 P A A 343 -14.010 47.223 117.705 1.00 18.70 P
ATOM 23 OP1 A A 343 -13.698 48.651 118.009 1.00 49.75 O
ATOM 24 OP2 A A 343 -15.316 46.658 118.129 1.00 51.28 O
ATOM 25 O5' A A 343 -13.826 46.970 116.143 1.00 12.95 O
TER
ATOM 1 O3' C B 49 -16.495 44.217 127.637 1.00 55.04 O
ATOM 2 P A B 50 -16.289 42.618 127.631 1.00 39.49 P
ATOM 3 OP1 A B 50 -15.511 42.286 128.845 1.00 70.71 O
ATOM 4 OP2 A B 50 -15.775 42.205 126.307 1.00 70.70 O
ATOM 5 O5' A B 50 -17.757 42.033 127.814 1.00 21.79 O
ATOM 6 C5' A B 50 -18.523 42.368 128.982 1.00 23.01 C
ATOM 7 C4' A B 50 -19.576 41.315 129.265 1.00 23.94 C
ATOM 8 O4' A B 50 -20.709 41.457 128.367 1.00 23.85 O
ATOM 9 C3' A B 50 -19.166 39.856 129.129 1.00 24.86 C
ATOM 10 O3' A B 50 -18.479 39.359 130.265 1.00 26.31 O
ATOM 11 C2' A B 50 -20.504 39.153 128.947 1.00 24.74 C
ATOM 12 O2' A B 50 -21.148 38.894 130.182 1.00 25.08 O
ATOM 13 C1' A B 50 -21.290 40.182 128.127 1.00 25.06 C
ATOM 14 N9 A B 50 -21.192 39.894 126.698 1.00 53.44 N
ATOM 15 C8 A B 50 -20.448 40.562 125.761 1.00 53.55 C
ATOM 16 N7 A B 50 -20.511 40.035 124.564 1.00 54.38 N
ATOM 17 C5 A B 50 -21.365 38.954 124.719 1.00 54.40 C
ATOM 18 C6 A B 50 -21.831 37.987 123.822 1.00 54.96 C
ATOM 19 N6 A B 50 -21.478 37.940 122.537 1.00 56.50 N
ATOM 20 N1 A B 50 -22.675 37.050 124.292 1.00 55.44 N
ATOM 21 C2 A B 50 -23.017 37.088 125.580 1.00 55.62 C
ATOM 22 N3 A B 50 -22.643 37.942 126.525 1.00 54.23 N
ATOM 23 C4 A B 50 -21.805 38.864 126.025 1.00 54.14 C
ATOM 24 P U B 51 -17.203 38.415 130.054 1.00 45.63 P
ATOM 25 OP1 U B 51 -16.790 37.948 131.402 1.00 65.62 O
ATOM 26 OP2 U B 51 -16.221 39.126 129.183 1.00 63.89 O
ATOM 27 O5' U B 51 -17.784 37.165 129.257 1.00 44.71 O
TER
ATOM 2 P C A 342 -9.123 44.836 122.033 1.00 53.47 P
ATOM 3 OP1 C A 342 -9.743 43.491 122.222 1.00 92.76 O
ATOM 4 OP2 C A 342 -7.783 44.945 121.396 1.00 94.36 O
ATOM 5 O5' C A 342 -10.104 45.699 121.137 1.00 38.19 O
ATOM 6 C5' C A 342 -11.514 45.459 121.162 1.00 37.11 C
ATOM 7 C4' C A 342 -11.924 44.743 119.904 1.00 36.21 C
ATOM 8 O4' C A 342 -12.245 43.372 120.232 1.00 37.15 O
ATOM 9 C3' C A 342 -13.166 45.283 119.225 1.00 35.80 C
ATOM 10 O3' C A 342 -12.839 46.323 118.333 1.00 34.87 O
ATOM 11 C2' C A 342 -13.687 44.071 118.485 1.00 36.20 C
ATOM 12 O2' C A 342 -12.972 43.853 117.284 1.00 37.83 O
ATOM 13 C1' C A 342 -13.365 42.956 119.479 1.00 37.31 C
ATOM 14 N1 C A 342 -14.469 42.732 120.421 1.00 29.88 N
ATOM 15 C2 C A 342 -15.659 42.159 119.950 1.00 31.07 C
ATOM 16 O2 C A 342 -15.750 41.848 118.741 1.00 32.47 O
ATOM 17 N3 C A 342 -16.682 41.960 120.819 1.00 32.94 N
ATOM 18 C4 C A 342 -16.548 42.311 122.102 1.00 33.23 C
ATOM 19 N4 C A 342 -17.585 42.107 122.921 1.00 32.74 N
ATOM 20 C5 C A 342 -15.347 42.891 122.602 1.00 31.02 C
ATOM 21 C6 C A 342 -14.345 43.081 121.738 1.00 29.22 C
ATOM 22 P A A 343 -14.010 47.223 117.705 1.00 18.70 P
ATOM 23 OP1 A A 343 -13.698 48.651 118.009 1.00 49.75 O
ATOM 24 OP2 A A 343 -15.316 46.658 118.129 1.00 51.28 O
ATOM 25 O5' A A 343 -13.826 46.970 116.143 1.00 12.95 O
TER
ATOM 1 O3' C B 49 -16.495 44.217 127.637 1.00 55.04 O
ATOM 2 P A B 50 -16.289 42.618 127.631 1.00 39.49 P
ATOM 3 OP1 A B 50 -15.511 42.286 128.845 1.00 70.71 O
ATOM 4 OP2 A B 50 -15.775 42.205 126.307 1.00 70.70 O
ATOM 5 O5' A B 50 -17.757 42.033 127.814 1.00 21.79 O
ATOM 6 C5' A B 50 -18.523 42.368 128.982 1.00 23.01 C
ATOM 7 C4' A B 50 -19.576 41.315 129.265 1.00 23.94 C
ATOM 8 O4' A B 50 -20.709 41.457 128.367 1.00 23.85 O
ATOM 9 C3' A B 50 -19.166 39.856 129.129 1.00 24.86 C
ATOM 10 O3' A B 50 -18.479 39.359 130.265 1.00 26.31 O
ATOM 11 C2' A B 50 -20.504 39.153 128.947 1.00 24.74 C
ATOM 12 O2' A B 50 -21.148 38.894 130.182 1.00 25.08 O
ATOM 13 C1' A B 50 -21.290 40.182 128.127 1.00 25.06 C
ATOM 14 N9 A B 50 -21.192 39.894 126.698 1.00 53.44 N
ATOM 15 C8 A B 50 -20.448 40.562 125.761 1.00 53.55 C
ATOM 16 N7 A B 50 -20.511 40.035 124.564 1.00 54.38 N
ATOM 17 C5 A B 50 -21.365 38.954 124.719 1.00 54.40 C
ATOM 18 C6 A B 50 -21.831 37.987 123.822 1.00 54.96 C
ATOM 19 N6 A B 50 -21.478 37.940 122.537 1.00 56.50 N
ATOM 20 N1 A B 50 -22.675 37.050 124.292 1.00 55.44 N
ATOM 21 C2 A B 50 -23.017 37.088 125.580 1.00 55.62 C
ATOM 22 N3 A B 50 -22.643 37.942 126.525 1.00 54.23 N
ATOM 23 C4 A B 50 -21.805 38.864 126.025 1.00 54.14 C
ATOM 24 P U B 51 -17.203 38.415 130.054 1.00 45.63 P
ATOM 25 OP1 U B 51 -16.790 37.948 131.402 1.00 65.62 O
ATOM 26 OP2 U B 51 -16.221 39.126 129.183 1.00 63.89 O
ATOM 27 O5' U B 51 -17.784 37.165 129.257 1.00 44.71 O
TER
Atoms:
C2: (-15.659,42.159,119.950)
OP1: (-9.743,43.491,122.222)
OP2: (-7.783,44.945,121.396)
C4: (-16.548,42.311,122.102)
O5': (-10.104,45.699,121.137)
C3': (-13.166,45.283,119.225)
C1': (-13.365,42.956,119.479)
O4': (-12.245,43.372,120.232)
C5': (-11.514,45.459,121.162)
P: (-9.123,44.836,122.033)
O2: (-15.750,41.848,118.741)
C4': (-11.924,44.743,119.904)
C2': (-13.687,44.071,118.485)
O2': (-12.972,43.853,117.284)
N1: (-14.469,42.732,120.421)
N3: (-16.682,41.960,120.819)
N4: (-17.585,42.107,122.921)
C6: (-14.345,43.081,121.738)
C5: (-15.347,42.891,122.602)
O3': (-12.839,46.323,118.333)
OP1: (-9.743,43.491,122.222)
OP2: (-7.783,44.945,121.396)
C4: (-16.548,42.311,122.102)
O5': (-10.104,45.699,121.137)
C3': (-13.166,45.283,119.225)
C1': (-13.365,42.956,119.479)
O4': (-12.245,43.372,120.232)
C5': (-11.514,45.459,121.162)
P: (-9.123,44.836,122.033)
O2: (-15.750,41.848,118.741)
C4': (-11.924,44.743,119.904)
C2': (-13.687,44.071,118.485)
O2': (-12.972,43.853,117.284)
N1: (-14.469,42.732,120.421)
N3: (-16.682,41.960,120.819)
N4: (-17.585,42.107,122.921)
C6: (-14.345,43.081,121.738)
C5: (-15.347,42.891,122.602)
O3': (-12.839,46.323,118.333)
OP1: (-15.511,42.286,128.845)
OP2: (-15.775,42.205,126.307)
C3': (-19.166,39.856,129.129)
C1': (-21.290,40.182,128.127)
C5': (-18.523,42.368,128.982)
O4': (-20.709,41.457,128.367)
C8: (-20.448,40.562,125.761)
O2': (-21.148,38.894,130.182)
C6: (-21.831,37.987,123.822)
C5: (-21.365,38.954,124.719)
C4: (-21.805,38.864,126.025)
P: (-16.289,42.618,127.631)
C4': (-19.576,41.315,129.265)
C2': (-20.504,39.153,128.947)
C2: (-23.017,37.088,125.580)
N1: (-22.675,37.050,124.292)
N3: (-22.643,37.942,126.525)
N6: (-21.478,37.940,122.537)
N7: (-20.511,40.035,124.564)
N9: (-21.192,39.894,126.698)
O5': (-17.757,42.033,127.814)
O3': (-18.479,39.359,130.265)
OP2: (-15.775,42.205,126.307)
C3': (-19.166,39.856,129.129)
C1': (-21.290,40.182,128.127)
C5': (-18.523,42.368,128.982)
O4': (-20.709,41.457,128.367)
C8: (-20.448,40.562,125.761)
O2': (-21.148,38.894,130.182)
C6: (-21.831,37.987,123.822)
C5: (-21.365,38.954,124.719)
C4: (-21.805,38.864,126.025)
P: (-16.289,42.618,127.631)
C4': (-19.576,41.315,129.265)
C2': (-20.504,39.153,128.947)
C2: (-23.017,37.088,125.580)
N1: (-22.675,37.050,124.292)
N3: (-22.643,37.942,126.525)
N6: (-21.478,37.940,122.537)
N7: (-20.511,40.035,124.564)
N9: (-21.192,39.894,126.698)
O5': (-17.757,42.033,127.814)
O3': (-18.479,39.359,130.265)
Image (generated by PyMOL):