Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5K:B62:B61
Extra
PDB:
ATOM 1 O3' A A 61 98.355 18.514 41.373 1.00118.98 O
ATOM 2 P C A 62 99.596 17.610 40.898 1.00120.64 P
ATOM 3 OP1 C A 62 100.840 18.358 41.207 1.00127.07 O
ATOM 4 OP2 C A 62 99.326 17.180 39.502 1.00121.08 O
ATOM 5 O5' C A 62 99.530 16.318 41.830 1.00117.72 O
ATOM 6 C5' C A 62 100.112 16.315 43.132 1.00115.03 C
ATOM 7 C4' C A 62 99.840 14.999 43.824 1.00117.45 C
ATOM 8 O4' C A 62 98.403 14.842 43.998 1.00111.50 O
ATOM 9 C3' C A 62 100.252 13.748 43.061 1.00119.67 C
ATOM 10 O3' C A 62 101.629 13.429 43.229 1.00126.12 O
ATOM 11 C2' C A 62 99.347 12.696 43.685 1.00114.70 C
ATOM 12 O2' C A 62 99.791 12.273 44.960 1.00117.98 O
ATOM 13 C1' C A 62 98.042 13.481 43.813 1.00106.50 C
ATOM 14 N1 C A 62 97.258 13.380 42.575 1.00 99.92 N
ATOM 15 C2 C A 62 96.515 12.222 42.345 1.00101.58 C
ATOM 16 O2 C A 62 96.511 11.331 43.208 1.00105.78 O
ATOM 17 N3 C A 62 95.822 12.101 41.189 1.00 98.87 N
ATOM 18 C4 C A 62 95.850 13.087 40.289 1.00 96.31 C
ATOM 19 N4 C A 62 95.156 12.924 39.161 1.00 95.54 N
ATOM 20 C5 C A 62 96.590 14.283 40.506 1.00 93.96 C
ATOM 21 C6 C A 62 97.268 14.389 41.653 1.00 96.80 C
ATOM 22 P C A 63 102.406 12.630 42.067 1.00125.99 P
ATOM 23 OP1 C A 63 103.761 12.284 42.562 1.00134.80 O
ATOM 24 OP2 C A 63 102.260 13.399 40.804 1.00126.90 O
ATOM 25 O5' C A 63 101.581 11.278 41.904 1.00122.27 O
TER
ATOM 1 O3' U B 60 95.129 18.177 36.323 1.00114.24 O
ATOM 2 P A B 61 95.658 16.967 37.238 1.00108.42 P
ATOM 3 OP1 A B 61 97.092 16.750 36.913 1.00117.12 O
ATOM 4 OP2 A B 61 94.695 15.845 37.091 1.00 96.61 O
ATOM 5 O5' A B 61 95.571 17.530 38.730 1.00 93.31 O
ATOM 6 C5' A B 61 96.047 18.837 39.062 1.00 93.93 C
ATOM 7 C4' A B 61 96.121 19.000 40.565 1.00100.57 C
ATOM 8 O4' A B 61 94.799 18.786 41.127 1.00104.71 O
ATOM 9 C3' A B 61 97.026 18.004 41.279 1.00109.42 C
ATOM 10 O3' A B 61 98.355 18.514 41.373 1.00118.98 O
ATOM 11 C2' A B 61 96.380 17.893 42.656 1.00107.65 C
ATOM 12 O2' A B 61 96.759 18.931 43.537 1.00106.03 O
ATOM 13 C1' A B 61 94.893 18.002 42.305 1.00100.33 C
ATOM 14 N9 A B 61 94.285 16.703 42.019 1.00 92.16 N
ATOM 15 C8 A B 61 93.817 16.261 40.807 1.00 84.94 C
ATOM 16 N7 A B 61 93.350 15.038 40.833 1.00 83.61 N
ATOM 17 C5 A B 61 93.514 14.648 42.153 1.00 86.48 C
ATOM 18 C6 A B 61 93.215 13.454 42.825 1.00 87.05 C
ATOM 19 N6 A B 61 92.666 12.393 42.231 1.00 88.53 N
ATOM 20 N1 A B 61 93.503 13.386 44.144 1.00 91.48 N
ATOM 21 C2 A B 61 94.052 14.454 44.736 1.00 91.89 C
ATOM 22 N3 A B 61 94.380 15.633 44.210 1.00 95.00 N
ATOM 23 C4 A B 61 94.082 15.666 42.899 1.00 91.57 C
ATOM 24 P C B 62 99.596 17.610 40.898 1.00120.64 P
ATOM 25 OP1 C B 62 100.840 18.358 41.207 1.00127.07 O
ATOM 26 OP2 C B 62 99.326 17.180 39.502 1.00121.08 O
ATOM 27 O5' C B 62 99.530 16.318 41.830 1.00117.72 O
TER
ATOM 2 P C A 62 99.596 17.610 40.898 1.00120.64 P
ATOM 3 OP1 C A 62 100.840 18.358 41.207 1.00127.07 O
ATOM 4 OP2 C A 62 99.326 17.180 39.502 1.00121.08 O
ATOM 5 O5' C A 62 99.530 16.318 41.830 1.00117.72 O
ATOM 6 C5' C A 62 100.112 16.315 43.132 1.00115.03 C
ATOM 7 C4' C A 62 99.840 14.999 43.824 1.00117.45 C
ATOM 8 O4' C A 62 98.403 14.842 43.998 1.00111.50 O
ATOM 9 C3' C A 62 100.252 13.748 43.061 1.00119.67 C
ATOM 10 O3' C A 62 101.629 13.429 43.229 1.00126.12 O
ATOM 11 C2' C A 62 99.347 12.696 43.685 1.00114.70 C
ATOM 12 O2' C A 62 99.791 12.273 44.960 1.00117.98 O
ATOM 13 C1' C A 62 98.042 13.481 43.813 1.00106.50 C
ATOM 14 N1 C A 62 97.258 13.380 42.575 1.00 99.92 N
ATOM 15 C2 C A 62 96.515 12.222 42.345 1.00101.58 C
ATOM 16 O2 C A 62 96.511 11.331 43.208 1.00105.78 O
ATOM 17 N3 C A 62 95.822 12.101 41.189 1.00 98.87 N
ATOM 18 C4 C A 62 95.850 13.087 40.289 1.00 96.31 C
ATOM 19 N4 C A 62 95.156 12.924 39.161 1.00 95.54 N
ATOM 20 C5 C A 62 96.590 14.283 40.506 1.00 93.96 C
ATOM 21 C6 C A 62 97.268 14.389 41.653 1.00 96.80 C
ATOM 22 P C A 63 102.406 12.630 42.067 1.00125.99 P
ATOM 23 OP1 C A 63 103.761 12.284 42.562 1.00134.80 O
ATOM 24 OP2 C A 63 102.260 13.399 40.804 1.00126.90 O
ATOM 25 O5' C A 63 101.581 11.278 41.904 1.00122.27 O
TER
ATOM 1 O3' U B 60 95.129 18.177 36.323 1.00114.24 O
ATOM 2 P A B 61 95.658 16.967 37.238 1.00108.42 P
ATOM 3 OP1 A B 61 97.092 16.750 36.913 1.00117.12 O
ATOM 4 OP2 A B 61 94.695 15.845 37.091 1.00 96.61 O
ATOM 5 O5' A B 61 95.571 17.530 38.730 1.00 93.31 O
ATOM 6 C5' A B 61 96.047 18.837 39.062 1.00 93.93 C
ATOM 7 C4' A B 61 96.121 19.000 40.565 1.00100.57 C
ATOM 8 O4' A B 61 94.799 18.786 41.127 1.00104.71 O
ATOM 9 C3' A B 61 97.026 18.004 41.279 1.00109.42 C
ATOM 10 O3' A B 61 98.355 18.514 41.373 1.00118.98 O
ATOM 11 C2' A B 61 96.380 17.893 42.656 1.00107.65 C
ATOM 12 O2' A B 61 96.759 18.931 43.537 1.00106.03 O
ATOM 13 C1' A B 61 94.893 18.002 42.305 1.00100.33 C
ATOM 14 N9 A B 61 94.285 16.703 42.019 1.00 92.16 N
ATOM 15 C8 A B 61 93.817 16.261 40.807 1.00 84.94 C
ATOM 16 N7 A B 61 93.350 15.038 40.833 1.00 83.61 N
ATOM 17 C5 A B 61 93.514 14.648 42.153 1.00 86.48 C
ATOM 18 C6 A B 61 93.215 13.454 42.825 1.00 87.05 C
ATOM 19 N6 A B 61 92.666 12.393 42.231 1.00 88.53 N
ATOM 20 N1 A B 61 93.503 13.386 44.144 1.00 91.48 N
ATOM 21 C2 A B 61 94.052 14.454 44.736 1.00 91.89 C
ATOM 22 N3 A B 61 94.380 15.633 44.210 1.00 95.00 N
ATOM 23 C4 A B 61 94.082 15.666 42.899 1.00 91.57 C
ATOM 24 P C B 62 99.596 17.610 40.898 1.00120.64 P
ATOM 25 OP1 C B 62 100.840 18.358 41.207 1.00127.07 O
ATOM 26 OP2 C B 62 99.326 17.180 39.502 1.00121.08 O
ATOM 27 O5' C B 62 99.530 16.318 41.830 1.00117.72 O
TER
Atoms:
C2: (96.515,12.222,42.345)
OP1: (100.840,18.358,41.207)
OP2: (99.326,17.180,39.502)
C4: (95.850,13.087,40.289)
O5': (99.530,16.318,41.830)
C3': (100.252,13.748,43.061)
C1': (98.042,13.481,43.813)
O4': (98.403,14.842,43.998)
C5': (100.112,16.315,43.132)
P: (99.596,17.610,40.898)
O2: (96.511,11.331,43.208)
C4': (99.840,14.999,43.824)
C2': (99.347,12.696,43.685)
O2': (99.791,12.273,44.960)
N1: (97.258,13.380,42.575)
N3: (95.822,12.101,41.189)
N4: (95.156,12.924,39.161)
C6: (97.268,14.389,41.653)
C5: (96.590,14.283,40.506)
O3': (101.629,13.429,43.229)
OP1: (100.840,18.358,41.207)
OP2: (99.326,17.180,39.502)
C4: (95.850,13.087,40.289)
O5': (99.530,16.318,41.830)
C3': (100.252,13.748,43.061)
C1': (98.042,13.481,43.813)
O4': (98.403,14.842,43.998)
C5': (100.112,16.315,43.132)
P: (99.596,17.610,40.898)
O2: (96.511,11.331,43.208)
C4': (99.840,14.999,43.824)
C2': (99.347,12.696,43.685)
O2': (99.791,12.273,44.960)
N1: (97.258,13.380,42.575)
N3: (95.822,12.101,41.189)
N4: (95.156,12.924,39.161)
C6: (97.268,14.389,41.653)
C5: (96.590,14.283,40.506)
O3': (101.629,13.429,43.229)
OP1: (97.092,16.750,36.913)
OP2: (94.695,15.845,37.091)
C3': (97.026,18.004,41.279)
C1': (94.893,18.002,42.305)
C5': (96.047,18.837,39.062)
O4': (94.799,18.786,41.127)
C8: (93.817,16.261,40.807)
O2': (96.759,18.931,43.537)
C6: (93.215,13.454,42.825)
C5: (93.514,14.648,42.153)
C4: (94.082,15.666,42.899)
P: (95.658,16.967,37.238)
C4': (96.121,19.000,40.565)
C2': (96.380,17.893,42.656)
C2: (94.052,14.454,44.736)
N1: (93.503,13.386,44.144)
N3: (94.380,15.633,44.210)
N6: (92.666,12.393,42.231)
N7: (93.350,15.038,40.833)
N9: (94.285,16.703,42.019)
O5': (95.571,17.530,38.730)
O3': (98.355,18.514,41.373)
OP2: (94.695,15.845,37.091)
C3': (97.026,18.004,41.279)
C1': (94.893,18.002,42.305)
C5': (96.047,18.837,39.062)
O4': (94.799,18.786,41.127)
C8: (93.817,16.261,40.807)
O2': (96.759,18.931,43.537)
C6: (93.215,13.454,42.825)
C5: (93.514,14.648,42.153)
C4: (94.082,15.666,42.899)
P: (95.658,16.967,37.238)
C4': (96.121,19.000,40.565)
C2': (96.380,17.893,42.656)
C2: (94.052,14.454,44.736)
N1: (93.503,13.386,44.144)
N3: (94.380,15.633,44.210)
N6: (92.666,12.393,42.231)
N7: (93.350,15.038,40.833)
N9: (94.285,16.703,42.019)
O5': (95.571,17.530,38.730)
O3': (98.355,18.514,41.373)
Image (generated by PyMOL):