Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01167:01166
Extra
PDB:
ATOM 1 O3' A A1166 54.937 79.235 173.579 1.00104.51 O
ATOM 2 P C A1167 53.379 78.865 173.669 1.00102.54 P
ATOM 3 OP1 C A1167 53.033 78.095 172.443 1.00103.04 O
ATOM 4 OP2 C A1167 52.595 80.079 174.021 1.00100.68 O
ATOM 5 O5' C A1167 53.331 77.875 174.907 1.00101.16 O
ATOM 6 C5' C A1167 52.447 78.115 175.992 1.00 98.90 C
ATOM 7 C4' C A1167 53.090 77.694 177.281 1.00 96.87 C
ATOM 8 O4' C A1167 54.212 78.564 177.592 1.00 97.34 O
ATOM 9 C3' C A1167 52.163 77.854 178.461 1.00 95.93 C
ATOM 10 O3' C A1167 51.273 76.756 178.519 1.00 92.47 O
ATOM 11 C2' C A1167 53.141 77.976 179.614 1.00 97.24 C
ATOM 12 O2' C A1167 53.730 76.737 179.952 1.00 98.05 O
ATOM 13 C1' C A1167 54.209 78.871 178.981 1.00 98.30 C
ATOM 14 N1 C A1167 53.923 80.320 179.137 1.00 99.89 N
ATOM 15 C2 C A1167 53.828 80.875 180.437 1.00100.57 C
ATOM 16 O2 C A1167 53.987 80.142 181.427 1.00100.85 O
ATOM 17 N3 C A1167 53.562 82.198 180.570 1.00100.59 N
ATOM 18 C4 C A1167 53.391 82.961 179.486 1.00 99.96 C
ATOM 19 N4 C A1167 53.125 84.255 179.668 1.00 98.51 N
ATOM 20 C5 C A1167 53.484 82.429 178.165 1.00 99.96 C
ATOM 21 C6 C A1167 53.748 81.120 178.038 1.00100.26 C
ATOM 22 P C A1168 49.711 76.998 178.243 1.00 90.04 P
ATOM 23 OP1 C A1168 49.114 75.713 177.800 1.00 89.77 O
ATOM 24 OP2 C A1168 49.549 78.202 177.397 1.00 89.83 O
ATOM 25 O5' C A1168 49.161 77.344 179.691 1.00 89.15 O
TER
ATOM 1 O3' U B1165 54.951 86.092 174.265 1.00119.18 O
ATOM 2 P A B1166 54.091 84.787 174.619 1.00115.91 P
ATOM 3 OP1 A B1166 52.696 85.042 174.177 1.00115.81 O
ATOM 4 OP2 A B1166 54.354 84.392 176.028 1.00115.02 O
ATOM 5 O5' A B1166 54.714 83.678 173.668 1.00113.31 O
ATOM 6 C5' A B1166 54.416 82.305 173.885 1.00110.17 C
ATOM 7 C4' A B1166 55.678 81.487 173.873 1.00107.81 C
ATOM 8 O4' A B1166 56.711 82.135 174.652 1.00107.67 O
ATOM 9 C3' A B1166 55.495 80.133 174.523 1.00106.35 C
ATOM 10 O3' A B1166 54.937 79.235 173.579 1.00104.51 O
ATOM 11 C2' A B1166 56.907 79.784 174.972 1.00106.04 C
ATOM 12 O2' A B1166 57.704 79.276 173.923 1.00106.08 O
ATOM 13 C1' A B1166 57.437 81.162 175.384 1.00106.60 C
ATOM 14 N9 A B1166 57.308 81.486 176.806 1.00106.60 N
ATOM 15 C8 A B1166 56.693 82.587 177.350 1.00106.62 C
ATOM 16 N7 A B1166 56.750 82.635 178.657 1.00106.78 N
ATOM 17 C5 A B1166 57.445 81.486 179.001 1.00107.58 C
ATOM 18 C6 A B1166 57.835 80.957 180.242 1.00108.27 C
ATOM 19 N6 A B1166 57.569 81.542 181.413 1.00108.30 N
ATOM 20 N1 A B1166 58.516 79.790 180.241 1.00108.80 N
ATOM 21 C2 A B1166 58.779 79.204 179.065 1.00109.10 C
ATOM 22 N3 A B1166 58.465 79.604 177.834 1.00108.71 N
ATOM 23 C4 A B1166 57.791 80.766 177.871 1.00107.49 C
ATOM 24 P C B1167 53.379 78.865 173.669 1.00102.54 P
ATOM 25 OP1 C B1167 53.033 78.095 172.443 1.00103.04 O
ATOM 26 OP2 C B1167 52.595 80.079 174.021 1.00100.68 O
ATOM 27 O5' C B1167 53.331 77.875 174.907 1.00101.16 O
TER
ATOM 2 P C A1167 53.379 78.865 173.669 1.00102.54 P
ATOM 3 OP1 C A1167 53.033 78.095 172.443 1.00103.04 O
ATOM 4 OP2 C A1167 52.595 80.079 174.021 1.00100.68 O
ATOM 5 O5' C A1167 53.331 77.875 174.907 1.00101.16 O
ATOM 6 C5' C A1167 52.447 78.115 175.992 1.00 98.90 C
ATOM 7 C4' C A1167 53.090 77.694 177.281 1.00 96.87 C
ATOM 8 O4' C A1167 54.212 78.564 177.592 1.00 97.34 O
ATOM 9 C3' C A1167 52.163 77.854 178.461 1.00 95.93 C
ATOM 10 O3' C A1167 51.273 76.756 178.519 1.00 92.47 O
ATOM 11 C2' C A1167 53.141 77.976 179.614 1.00 97.24 C
ATOM 12 O2' C A1167 53.730 76.737 179.952 1.00 98.05 O
ATOM 13 C1' C A1167 54.209 78.871 178.981 1.00 98.30 C
ATOM 14 N1 C A1167 53.923 80.320 179.137 1.00 99.89 N
ATOM 15 C2 C A1167 53.828 80.875 180.437 1.00100.57 C
ATOM 16 O2 C A1167 53.987 80.142 181.427 1.00100.85 O
ATOM 17 N3 C A1167 53.562 82.198 180.570 1.00100.59 N
ATOM 18 C4 C A1167 53.391 82.961 179.486 1.00 99.96 C
ATOM 19 N4 C A1167 53.125 84.255 179.668 1.00 98.51 N
ATOM 20 C5 C A1167 53.484 82.429 178.165 1.00 99.96 C
ATOM 21 C6 C A1167 53.748 81.120 178.038 1.00100.26 C
ATOM 22 P C A1168 49.711 76.998 178.243 1.00 90.04 P
ATOM 23 OP1 C A1168 49.114 75.713 177.800 1.00 89.77 O
ATOM 24 OP2 C A1168 49.549 78.202 177.397 1.00 89.83 O
ATOM 25 O5' C A1168 49.161 77.344 179.691 1.00 89.15 O
TER
ATOM 1 O3' U B1165 54.951 86.092 174.265 1.00119.18 O
ATOM 2 P A B1166 54.091 84.787 174.619 1.00115.91 P
ATOM 3 OP1 A B1166 52.696 85.042 174.177 1.00115.81 O
ATOM 4 OP2 A B1166 54.354 84.392 176.028 1.00115.02 O
ATOM 5 O5' A B1166 54.714 83.678 173.668 1.00113.31 O
ATOM 6 C5' A B1166 54.416 82.305 173.885 1.00110.17 C
ATOM 7 C4' A B1166 55.678 81.487 173.873 1.00107.81 C
ATOM 8 O4' A B1166 56.711 82.135 174.652 1.00107.67 O
ATOM 9 C3' A B1166 55.495 80.133 174.523 1.00106.35 C
ATOM 10 O3' A B1166 54.937 79.235 173.579 1.00104.51 O
ATOM 11 C2' A B1166 56.907 79.784 174.972 1.00106.04 C
ATOM 12 O2' A B1166 57.704 79.276 173.923 1.00106.08 O
ATOM 13 C1' A B1166 57.437 81.162 175.384 1.00106.60 C
ATOM 14 N9 A B1166 57.308 81.486 176.806 1.00106.60 N
ATOM 15 C8 A B1166 56.693 82.587 177.350 1.00106.62 C
ATOM 16 N7 A B1166 56.750 82.635 178.657 1.00106.78 N
ATOM 17 C5 A B1166 57.445 81.486 179.001 1.00107.58 C
ATOM 18 C6 A B1166 57.835 80.957 180.242 1.00108.27 C
ATOM 19 N6 A B1166 57.569 81.542 181.413 1.00108.30 N
ATOM 20 N1 A B1166 58.516 79.790 180.241 1.00108.80 N
ATOM 21 C2 A B1166 58.779 79.204 179.065 1.00109.10 C
ATOM 22 N3 A B1166 58.465 79.604 177.834 1.00108.71 N
ATOM 23 C4 A B1166 57.791 80.766 177.871 1.00107.49 C
ATOM 24 P C B1167 53.379 78.865 173.669 1.00102.54 P
ATOM 25 OP1 C B1167 53.033 78.095 172.443 1.00103.04 O
ATOM 26 OP2 C B1167 52.595 80.079 174.021 1.00100.68 O
ATOM 27 O5' C B1167 53.331 77.875 174.907 1.00101.16 O
TER
Atoms:
C2: (53.828,80.875,180.437)
OP1: (53.033,78.095,172.443)
OP2: (52.595,80.079,174.021)
C4: (53.391,82.961,179.486)
O5': (53.331,77.875,174.907)
C3': (52.163,77.854,178.461)
C1': (54.209,78.871,178.981)
O4': (54.212,78.564,177.592)
C5': (52.447,78.115,175.992)
P: (53.379,78.865,173.669)
O2: (53.987,80.142,181.427)
C4': (53.090,77.694,177.281)
C2': (53.141,77.976,179.614)
O2': (53.730,76.737,179.952)
N1: (53.923,80.320,179.137)
N3: (53.562,82.198,180.570)
N4: (53.125,84.255,179.668)
C6: (53.748,81.120,178.038)
C5: (53.484,82.429,178.165)
O3': (51.273,76.756,178.519)
OP1: (53.033,78.095,172.443)
OP2: (52.595,80.079,174.021)
C4: (53.391,82.961,179.486)
O5': (53.331,77.875,174.907)
C3': (52.163,77.854,178.461)
C1': (54.209,78.871,178.981)
O4': (54.212,78.564,177.592)
C5': (52.447,78.115,175.992)
P: (53.379,78.865,173.669)
O2: (53.987,80.142,181.427)
C4': (53.090,77.694,177.281)
C2': (53.141,77.976,179.614)
O2': (53.730,76.737,179.952)
N1: (53.923,80.320,179.137)
N3: (53.562,82.198,180.570)
N4: (53.125,84.255,179.668)
C6: (53.748,81.120,178.038)
C5: (53.484,82.429,178.165)
O3': (51.273,76.756,178.519)
OP1: (52.696,85.042,174.177)
OP2: (54.354,84.392,176.028)
C3': (55.495,80.133,174.523)
C1': (57.437,81.162,175.384)
C5': (54.416,82.305,173.885)
O4': (56.711,82.135,174.652)
C8: (56.693,82.587,177.350)
O2': (57.704,79.276,173.923)
C6: (57.835,80.957,180.242)
C5: (57.445,81.486,179.001)
C4: (57.791,80.766,177.871)
P: (54.091,84.787,174.619)
C4': (55.678,81.487,173.873)
C2': (56.907,79.784,174.972)
C2: (58.779,79.204,179.065)
N1: (58.516,79.790,180.241)
N3: (58.465,79.604,177.834)
N6: (57.569,81.542,181.413)
N7: (56.750,82.635,178.657)
N9: (57.308,81.486,176.806)
O5': (54.714,83.678,173.668)
O3': (54.937,79.235,173.579)
OP2: (54.354,84.392,176.028)
C3': (55.495,80.133,174.523)
C1': (57.437,81.162,175.384)
C5': (54.416,82.305,173.885)
O4': (56.711,82.135,174.652)
C8: (56.693,82.587,177.350)
O2': (57.704,79.276,173.923)
C6: (57.835,80.957,180.242)
C5: (57.445,81.486,179.001)
C4: (57.791,80.766,177.871)
P: (54.091,84.787,174.619)
C4': (55.678,81.487,173.873)
C2': (56.907,79.784,174.972)
C2: (58.779,79.204,179.065)
N1: (58.516,79.790,180.241)
N3: (58.465,79.604,177.834)
N6: (57.569,81.542,181.413)
N7: (56.750,82.635,178.657)
N9: (57.308,81.486,176.806)
O5': (54.714,83.678,173.668)
O3': (54.937,79.235,173.579)
Image (generated by PyMOL):