Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0232:0231
Extra
PDB:
ATOM 1 O3' A A 231 93.978 104.134 -1.036 1.00 73.26 O
ATOM 2 P C A 232 94.657 105.154 -2.067 1.00 73.89 P
ATOM 3 OP1 C A 232 95.837 104.443 -2.625 1.00 73.22 O
ATOM 4 OP2 C A 232 94.840 106.468 -1.397 1.00 73.91 O
ATOM 5 O5' C A 232 93.545 105.343 -3.189 1.00 72.31 O
ATOM 6 C5' C A 232 93.109 104.236 -3.995 1.00 73.85 C
ATOM 7 C4' C A 232 92.086 104.705 -5.000 1.00 74.48 C
ATOM 8 O4' C A 232 90.819 104.957 -4.337 1.00 74.16 O
ATOM 9 C3' C A 232 92.440 106.033 -5.639 1.00 74.51 C
ATOM 10 O3' C A 232 93.392 105.907 -6.677 1.00 74.95 O
ATOM 11 C2' C A 232 91.081 106.575 -6.055 1.00 74.21 C
ATOM 12 O2' C A 232 90.567 105.994 -7.235 1.00 74.99 O
ATOM 13 C1' C A 232 90.230 106.141 -4.862 1.00 73.82 C
ATOM 14 N1 C A 232 90.210 107.158 -3.793 1.00 72.54 N
ATOM 15 C2 C A 232 89.192 108.108 -3.792 1.00 71.60 C
ATOM 16 O2 C A 232 88.343 108.072 -4.691 1.00 71.53 O
ATOM 17 N3 C A 232 89.158 109.039 -2.811 1.00 71.95 N
ATOM 18 C4 C A 232 90.094 109.038 -1.857 1.00 71.79 C
ATOM 19 N4 C A 232 90.014 109.962 -0.897 1.00 71.59 N
ATOM 20 C5 C A 232 91.150 108.087 -1.840 1.00 71.86 C
ATOM 21 C6 C A 232 91.170 107.174 -2.816 1.00 72.54 C
ATOM 22 P C A 233 94.362 107.141 -6.998 1.00 74.52 P
ATOM 23 OP1 C A 233 95.391 106.681 -7.964 1.00 75.28 O
ATOM 24 OP2 C A 233 94.786 107.755 -5.717 1.00 74.55 O
ATOM 25 O5' C A 233 93.379 108.151 -7.726 1.00 73.54 O
TER
ATOM 1 O3' A B 230 93.172 107.713 3.787 1.00 66.26 O
ATOM 2 P A B 231 93.423 108.130 2.250 1.00 69.50 P
ATOM 3 OP1 A B 231 94.877 108.424 2.152 1.00 69.58 O
ATOM 4 OP2 A B 231 92.429 109.163 1.810 1.00 66.91 O
ATOM 5 O5' A B 231 93.113 106.793 1.441 1.00 68.58 O
ATOM 6 C5' A B 231 93.731 105.546 1.803 1.00 69.23 C
ATOM 7 C4' A B 231 93.000 104.395 1.152 1.00 70.71 C
ATOM 8 O4' A B 231 91.649 104.300 1.674 1.00 70.54 O
ATOM 9 C3' A B 231 92.795 104.517 -0.346 1.00 71.51 C
ATOM 10 O3' A B 231 93.978 104.134 -1.036 1.00 73.26 O
ATOM 11 C2' A B 231 91.619 103.574 -0.593 1.00 70.42 C
ATOM 12 O2' A B 231 91.989 102.206 -0.634 1.00 71.27 O
ATOM 13 C1' A B 231 90.778 103.810 0.665 1.00 67.60 C
ATOM 14 N9 A B 231 89.680 104.761 0.496 1.00 63.66 N
ATOM 15 C8 A B 231 89.746 106.121 0.310 1.00 63.25 C
ATOM 16 N7 A B 231 88.573 106.695 0.179 1.00 62.25 N
ATOM 17 C5 A B 231 87.674 105.644 0.288 1.00 61.76 C
ATOM 18 C6 A B 231 86.262 105.589 0.235 1.00 61.51 C
ATOM 19 N6 A B 231 85.478 106.656 0.028 1.00 59.56 N
ATOM 20 N1 A B 231 85.678 104.381 0.402 1.00 60.75 N
ATOM 21 C2 A B 231 86.461 103.310 0.597 1.00 61.11 C
ATOM 22 N3 A B 231 87.792 103.234 0.655 1.00 60.78 N
ATOM 23 C4 A B 231 88.343 104.448 0.493 1.00 61.78 C
ATOM 24 P C B 232 94.657 105.154 -2.067 1.00 73.89 P
ATOM 25 OP1 C B 232 95.837 104.443 -2.625 1.00 73.22 O
ATOM 26 OP2 C B 232 94.840 106.468 -1.397 1.00 73.91 O
ATOM 27 O5' C B 232 93.545 105.343 -3.189 1.00 72.31 O
TER
ATOM 2 P C A 232 94.657 105.154 -2.067 1.00 73.89 P
ATOM 3 OP1 C A 232 95.837 104.443 -2.625 1.00 73.22 O
ATOM 4 OP2 C A 232 94.840 106.468 -1.397 1.00 73.91 O
ATOM 5 O5' C A 232 93.545 105.343 -3.189 1.00 72.31 O
ATOM 6 C5' C A 232 93.109 104.236 -3.995 1.00 73.85 C
ATOM 7 C4' C A 232 92.086 104.705 -5.000 1.00 74.48 C
ATOM 8 O4' C A 232 90.819 104.957 -4.337 1.00 74.16 O
ATOM 9 C3' C A 232 92.440 106.033 -5.639 1.00 74.51 C
ATOM 10 O3' C A 232 93.392 105.907 -6.677 1.00 74.95 O
ATOM 11 C2' C A 232 91.081 106.575 -6.055 1.00 74.21 C
ATOM 12 O2' C A 232 90.567 105.994 -7.235 1.00 74.99 O
ATOM 13 C1' C A 232 90.230 106.141 -4.862 1.00 73.82 C
ATOM 14 N1 C A 232 90.210 107.158 -3.793 1.00 72.54 N
ATOM 15 C2 C A 232 89.192 108.108 -3.792 1.00 71.60 C
ATOM 16 O2 C A 232 88.343 108.072 -4.691 1.00 71.53 O
ATOM 17 N3 C A 232 89.158 109.039 -2.811 1.00 71.95 N
ATOM 18 C4 C A 232 90.094 109.038 -1.857 1.00 71.79 C
ATOM 19 N4 C A 232 90.014 109.962 -0.897 1.00 71.59 N
ATOM 20 C5 C A 232 91.150 108.087 -1.840 1.00 71.86 C
ATOM 21 C6 C A 232 91.170 107.174 -2.816 1.00 72.54 C
ATOM 22 P C A 233 94.362 107.141 -6.998 1.00 74.52 P
ATOM 23 OP1 C A 233 95.391 106.681 -7.964 1.00 75.28 O
ATOM 24 OP2 C A 233 94.786 107.755 -5.717 1.00 74.55 O
ATOM 25 O5' C A 233 93.379 108.151 -7.726 1.00 73.54 O
TER
ATOM 1 O3' A B 230 93.172 107.713 3.787 1.00 66.26 O
ATOM 2 P A B 231 93.423 108.130 2.250 1.00 69.50 P
ATOM 3 OP1 A B 231 94.877 108.424 2.152 1.00 69.58 O
ATOM 4 OP2 A B 231 92.429 109.163 1.810 1.00 66.91 O
ATOM 5 O5' A B 231 93.113 106.793 1.441 1.00 68.58 O
ATOM 6 C5' A B 231 93.731 105.546 1.803 1.00 69.23 C
ATOM 7 C4' A B 231 93.000 104.395 1.152 1.00 70.71 C
ATOM 8 O4' A B 231 91.649 104.300 1.674 1.00 70.54 O
ATOM 9 C3' A B 231 92.795 104.517 -0.346 1.00 71.51 C
ATOM 10 O3' A B 231 93.978 104.134 -1.036 1.00 73.26 O
ATOM 11 C2' A B 231 91.619 103.574 -0.593 1.00 70.42 C
ATOM 12 O2' A B 231 91.989 102.206 -0.634 1.00 71.27 O
ATOM 13 C1' A B 231 90.778 103.810 0.665 1.00 67.60 C
ATOM 14 N9 A B 231 89.680 104.761 0.496 1.00 63.66 N
ATOM 15 C8 A B 231 89.746 106.121 0.310 1.00 63.25 C
ATOM 16 N7 A B 231 88.573 106.695 0.179 1.00 62.25 N
ATOM 17 C5 A B 231 87.674 105.644 0.288 1.00 61.76 C
ATOM 18 C6 A B 231 86.262 105.589 0.235 1.00 61.51 C
ATOM 19 N6 A B 231 85.478 106.656 0.028 1.00 59.56 N
ATOM 20 N1 A B 231 85.678 104.381 0.402 1.00 60.75 N
ATOM 21 C2 A B 231 86.461 103.310 0.597 1.00 61.11 C
ATOM 22 N3 A B 231 87.792 103.234 0.655 1.00 60.78 N
ATOM 23 C4 A B 231 88.343 104.448 0.493 1.00 61.78 C
ATOM 24 P C B 232 94.657 105.154 -2.067 1.00 73.89 P
ATOM 25 OP1 C B 232 95.837 104.443 -2.625 1.00 73.22 O
ATOM 26 OP2 C B 232 94.840 106.468 -1.397 1.00 73.91 O
ATOM 27 O5' C B 232 93.545 105.343 -3.189 1.00 72.31 O
TER
Atoms:
C2: (89.192,108.108,-3.792)
OP1: (95.837,104.443,-2.625)
OP2: (94.840,106.468,-1.397)
C4: (90.094,109.038,-1.857)
O5': (93.545,105.343,-3.189)
C3': (92.440,106.033,-5.639)
C1': (90.230,106.141,-4.862)
O4': (90.819,104.957,-4.337)
C5': (93.109,104.236,-3.995)
P: (94.657,105.154,-2.067)
O2: (88.343,108.072,-4.691)
C4': (92.086,104.705,-5.000)
C2': (91.081,106.575,-6.055)
O2': (90.567,105.994,-7.235)
N1: (90.210,107.158,-3.793)
N3: (89.158,109.039,-2.811)
N4: (90.014,109.962,-0.897)
C6: (91.170,107.174,-2.816)
C5: (91.150,108.087,-1.840)
O3': (93.392,105.907,-6.677)
OP1: (95.837,104.443,-2.625)
OP2: (94.840,106.468,-1.397)
C4: (90.094,109.038,-1.857)
O5': (93.545,105.343,-3.189)
C3': (92.440,106.033,-5.639)
C1': (90.230,106.141,-4.862)
O4': (90.819,104.957,-4.337)
C5': (93.109,104.236,-3.995)
P: (94.657,105.154,-2.067)
O2: (88.343,108.072,-4.691)
C4': (92.086,104.705,-5.000)
C2': (91.081,106.575,-6.055)
O2': (90.567,105.994,-7.235)
N1: (90.210,107.158,-3.793)
N3: (89.158,109.039,-2.811)
N4: (90.014,109.962,-0.897)
C6: (91.170,107.174,-2.816)
C5: (91.150,108.087,-1.840)
O3': (93.392,105.907,-6.677)
OP1: (94.877,108.424,2.152)
OP2: (92.429,109.163,1.810)
C3': (92.795,104.517,-0.346)
C1': (90.778,103.810,0.665)
C5': (93.731,105.546,1.803)
O4': (91.649,104.300,1.674)
C8: (89.746,106.121,0.310)
O2': (91.989,102.206,-0.634)
C6: (86.262,105.589,0.235)
C5: (87.674,105.644,0.288)
C4: (88.343,104.448,0.493)
P: (93.423,108.130,2.250)
C4': (93.000,104.395,1.152)
C2': (91.619,103.574,-0.593)
C2: (86.461,103.310,0.597)
N1: (85.678,104.381,0.402)
N3: (87.792,103.234,0.655)
N6: (85.478,106.656,0.028)
N7: (88.573,106.695,0.179)
N9: (89.680,104.761,0.496)
O5': (93.113,106.793,1.441)
O3': (93.978,104.134,-1.036)
OP2: (92.429,109.163,1.810)
C3': (92.795,104.517,-0.346)
C1': (90.778,103.810,0.665)
C5': (93.731,105.546,1.803)
O4': (91.649,104.300,1.674)
C8: (89.746,106.121,0.310)
O2': (91.989,102.206,-0.634)
C6: (86.262,105.589,0.235)
C5: (87.674,105.644,0.288)
C4: (88.343,104.448,0.493)
P: (93.423,108.130,2.250)
C4': (93.000,104.395,1.152)
C2': (91.619,103.574,-0.593)
C2: (86.461,103.310,0.597)
N1: (85.678,104.381,0.402)
N3: (87.792,103.234,0.655)
N6: (85.478,106.656,0.028)
N7: (88.573,106.695,0.179)
N9: (89.680,104.761,0.496)
O5': (93.113,106.793,1.441)
O3': (93.978,104.134,-1.036)
Image (generated by PyMOL):