Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5V:E62:E61
Extra
PDB:
ATOM 1 O3' A A 61 -14.218 18.434 115.949 1.00 89.69 O
ATOM 2 P C A 62 -15.450 17.502 116.398 1.00 87.57 P
ATOM 3 OP1 C A 62 -16.695 18.179 115.960 1.00 85.27 O
ATOM 4 OP2 C A 62 -15.266 17.162 117.831 1.00 85.55 O
ATOM 5 O5' C A 62 -15.282 16.173 115.536 1.00 82.05 O
ATOM 6 C5' C A 62 -15.883 16.056 114.250 1.00 80.65 C
ATOM 7 C4' C A 62 -15.718 14.650 113.722 1.00 81.08 C
ATOM 8 O4' C A 62 -14.306 14.376 113.531 1.00 84.50 O
ATOM 9 C3' C A 62 -16.198 13.544 114.647 1.00 84.77 C
ATOM 10 O3' C A 62 -17.588 13.305 114.476 1.00 85.19 O
ATOM 11 C2' C A 62 -15.369 12.354 114.185 1.00 88.45 C
ATOM 12 O2' C A 62 -15.888 11.731 113.026 1.00 89.42 O
ATOM 13 C1' C A 62 -14.032 13.026 113.867 1.00 86.49 C
ATOM 14 N1 C A 62 -13.111 13.022 115.012 1.00 84.18 N
ATOM 15 C2 C A 62 -12.423 11.848 115.314 1.00 84.88 C
ATOM 16 O2 C A 62 -12.610 10.846 114.604 1.00 83.72 O
ATOM 17 N3 C A 62 -11.574 11.831 116.369 1.00 86.05 N
ATOM 18 C4 C A 62 -11.404 12.931 117.106 1.00 86.49 C
ATOM 19 N4 C A 62 -10.558 12.870 118.139 1.00 85.99 N
ATOM 20 C5 C A 62 -12.095 14.145 116.818 1.00 85.33 C
ATOM 21 C6 C A 62 -12.929 14.145 115.771 1.00 84.09 C
ATOM 22 P C A 63 -18.475 12.836 115.730 1.00 91.17 P
ATOM 23 OP1 C A 63 -19.893 12.776 115.295 1.00 97.38 O
ATOM 24 OP2 C A 63 -18.098 13.690 116.885 1.00 90.31 O
ATOM 25 O5' C A 63 -17.983 11.350 116.013 1.00 83.39 O
TER
ATOM 1 O3' U B 60 -9.639 18.374 119.915 1.00 88.02 O
ATOM 2 P A B 61 -10.379 17.033 119.419 1.00 85.55 P
ATOM 3 OP1 A B 61 -11.535 16.791 120.316 1.00 89.99 O
ATOM 4 OP2 A B 61 -9.357 15.973 119.242 1.00 92.13 O
ATOM 5 O5' A B 61 -10.952 17.420 117.983 1.00 83.96 O
ATOM 6 C5' A B 61 -11.471 18.724 117.723 1.00 82.22 C
ATOM 7 C4' A B 61 -11.858 18.850 116.265 1.00 87.72 C
ATOM 8 O4' A B 61 -10.689 18.581 115.447 1.00 85.68 O
ATOM 9 C3' A B 61 -12.919 17.870 115.780 1.00 87.04 C
ATOM 10 O3' A B 61 -14.218 18.434 115.949 1.00 89.69 O
ATOM 11 C2' A B 61 -12.581 17.731 114.300 1.00 84.87 C
ATOM 12 O2' A B 61 -13.070 18.811 113.530 1.00 87.24 O
ATOM 13 C1' A B 61 -11.053 17.785 114.332 1.00 82.82 C
ATOM 14 N9 A B 61 -10.424 16.474 114.495 1.00 78.94 N
ATOM 15 C8 A B 61 -9.585 16.077 115.504 1.00 78.67 C
ATOM 16 N7 A B 61 -9.181 14.835 115.400 1.00 77.78 N
ATOM 17 C5 A B 61 -9.793 14.384 114.241 1.00 76.06 C
ATOM 18 C6 A B 61 -9.769 13.143 113.584 1.00 76.15 C
ATOM 19 N6 A B 61 -9.079 12.086 114.020 1.00 73.18 N
ATOM 20 N1 A B 61 -10.488 13.022 112.449 1.00 77.42 N
ATOM 21 C2 A B 61 -11.184 14.082 112.015 1.00 79.80 C
ATOM 22 N3 A B 61 -11.288 15.299 112.547 1.00 79.13 N
ATOM 23 C4 A B 61 -10.560 15.384 113.671 1.00 77.13 C
ATOM 24 P C B 62 -15.450 17.502 116.398 1.00 87.57 P
ATOM 25 OP1 C B 62 -16.695 18.179 115.960 1.00 85.27 O
ATOM 26 OP2 C B 62 -15.266 17.162 117.831 1.00 85.55 O
ATOM 27 O5' C B 62 -15.282 16.173 115.536 1.00 82.05 O
TER
ATOM 2 P C A 62 -15.450 17.502 116.398 1.00 87.57 P
ATOM 3 OP1 C A 62 -16.695 18.179 115.960 1.00 85.27 O
ATOM 4 OP2 C A 62 -15.266 17.162 117.831 1.00 85.55 O
ATOM 5 O5' C A 62 -15.282 16.173 115.536 1.00 82.05 O
ATOM 6 C5' C A 62 -15.883 16.056 114.250 1.00 80.65 C
ATOM 7 C4' C A 62 -15.718 14.650 113.722 1.00 81.08 C
ATOM 8 O4' C A 62 -14.306 14.376 113.531 1.00 84.50 O
ATOM 9 C3' C A 62 -16.198 13.544 114.647 1.00 84.77 C
ATOM 10 O3' C A 62 -17.588 13.305 114.476 1.00 85.19 O
ATOM 11 C2' C A 62 -15.369 12.354 114.185 1.00 88.45 C
ATOM 12 O2' C A 62 -15.888 11.731 113.026 1.00 89.42 O
ATOM 13 C1' C A 62 -14.032 13.026 113.867 1.00 86.49 C
ATOM 14 N1 C A 62 -13.111 13.022 115.012 1.00 84.18 N
ATOM 15 C2 C A 62 -12.423 11.848 115.314 1.00 84.88 C
ATOM 16 O2 C A 62 -12.610 10.846 114.604 1.00 83.72 O
ATOM 17 N3 C A 62 -11.574 11.831 116.369 1.00 86.05 N
ATOM 18 C4 C A 62 -11.404 12.931 117.106 1.00 86.49 C
ATOM 19 N4 C A 62 -10.558 12.870 118.139 1.00 85.99 N
ATOM 20 C5 C A 62 -12.095 14.145 116.818 1.00 85.33 C
ATOM 21 C6 C A 62 -12.929 14.145 115.771 1.00 84.09 C
ATOM 22 P C A 63 -18.475 12.836 115.730 1.00 91.17 P
ATOM 23 OP1 C A 63 -19.893 12.776 115.295 1.00 97.38 O
ATOM 24 OP2 C A 63 -18.098 13.690 116.885 1.00 90.31 O
ATOM 25 O5' C A 63 -17.983 11.350 116.013 1.00 83.39 O
TER
ATOM 1 O3' U B 60 -9.639 18.374 119.915 1.00 88.02 O
ATOM 2 P A B 61 -10.379 17.033 119.419 1.00 85.55 P
ATOM 3 OP1 A B 61 -11.535 16.791 120.316 1.00 89.99 O
ATOM 4 OP2 A B 61 -9.357 15.973 119.242 1.00 92.13 O
ATOM 5 O5' A B 61 -10.952 17.420 117.983 1.00 83.96 O
ATOM 6 C5' A B 61 -11.471 18.724 117.723 1.00 82.22 C
ATOM 7 C4' A B 61 -11.858 18.850 116.265 1.00 87.72 C
ATOM 8 O4' A B 61 -10.689 18.581 115.447 1.00 85.68 O
ATOM 9 C3' A B 61 -12.919 17.870 115.780 1.00 87.04 C
ATOM 10 O3' A B 61 -14.218 18.434 115.949 1.00 89.69 O
ATOM 11 C2' A B 61 -12.581 17.731 114.300 1.00 84.87 C
ATOM 12 O2' A B 61 -13.070 18.811 113.530 1.00 87.24 O
ATOM 13 C1' A B 61 -11.053 17.785 114.332 1.00 82.82 C
ATOM 14 N9 A B 61 -10.424 16.474 114.495 1.00 78.94 N
ATOM 15 C8 A B 61 -9.585 16.077 115.504 1.00 78.67 C
ATOM 16 N7 A B 61 -9.181 14.835 115.400 1.00 77.78 N
ATOM 17 C5 A B 61 -9.793 14.384 114.241 1.00 76.06 C
ATOM 18 C6 A B 61 -9.769 13.143 113.584 1.00 76.15 C
ATOM 19 N6 A B 61 -9.079 12.086 114.020 1.00 73.18 N
ATOM 20 N1 A B 61 -10.488 13.022 112.449 1.00 77.42 N
ATOM 21 C2 A B 61 -11.184 14.082 112.015 1.00 79.80 C
ATOM 22 N3 A B 61 -11.288 15.299 112.547 1.00 79.13 N
ATOM 23 C4 A B 61 -10.560 15.384 113.671 1.00 77.13 C
ATOM 24 P C B 62 -15.450 17.502 116.398 1.00 87.57 P
ATOM 25 OP1 C B 62 -16.695 18.179 115.960 1.00 85.27 O
ATOM 26 OP2 C B 62 -15.266 17.162 117.831 1.00 85.55 O
ATOM 27 O5' C B 62 -15.282 16.173 115.536 1.00 82.05 O
TER
Atoms:
C2: (-12.423,11.848,115.314)
OP1: (-16.695,18.179,115.960)
OP2: (-15.266,17.162,117.831)
C4: (-11.404,12.931,117.106)
O5': (-15.282,16.173,115.536)
C3': (-16.198,13.544,114.647)
C1': (-14.032,13.026,113.867)
O4': (-14.306,14.376,113.531)
C5': (-15.883,16.056,114.250)
P: (-15.450,17.502,116.398)
O2: (-12.610,10.846,114.604)
C4': (-15.718,14.650,113.722)
C2': (-15.369,12.354,114.185)
O2': (-15.888,11.731,113.026)
N1: (-13.111,13.022,115.012)
N3: (-11.574,11.831,116.369)
N4: (-10.558,12.870,118.139)
C6: (-12.929,14.145,115.771)
C5: (-12.095,14.145,116.818)
O3': (-17.588,13.305,114.476)
OP1: (-16.695,18.179,115.960)
OP2: (-15.266,17.162,117.831)
C4: (-11.404,12.931,117.106)
O5': (-15.282,16.173,115.536)
C3': (-16.198,13.544,114.647)
C1': (-14.032,13.026,113.867)
O4': (-14.306,14.376,113.531)
C5': (-15.883,16.056,114.250)
P: (-15.450,17.502,116.398)
O2: (-12.610,10.846,114.604)
C4': (-15.718,14.650,113.722)
C2': (-15.369,12.354,114.185)
O2': (-15.888,11.731,113.026)
N1: (-13.111,13.022,115.012)
N3: (-11.574,11.831,116.369)
N4: (-10.558,12.870,118.139)
C6: (-12.929,14.145,115.771)
C5: (-12.095,14.145,116.818)
O3': (-17.588,13.305,114.476)
OP1: (-11.535,16.791,120.316)
OP2: (-9.357,15.973,119.242)
C3': (-12.919,17.870,115.780)
C1': (-11.053,17.785,114.332)
C5': (-11.471,18.724,117.723)
O4': (-10.689,18.581,115.447)
C8: (-9.585,16.077,115.504)
O2': (-13.070,18.811,113.530)
C6: (-9.769,13.143,113.584)
C5: (-9.793,14.384,114.241)
C4: (-10.560,15.384,113.671)
P: (-10.379,17.033,119.419)
C4': (-11.858,18.850,116.265)
C2': (-12.581,17.731,114.300)
C2: (-11.184,14.082,112.015)
N1: (-10.488,13.022,112.449)
N3: (-11.288,15.299,112.547)
N6: (-9.079,12.086,114.020)
N7: (-9.181,14.835,115.400)
N9: (-10.424,16.474,114.495)
O5': (-10.952,17.420,117.983)
O3': (-14.218,18.434,115.949)
OP2: (-9.357,15.973,119.242)
C3': (-12.919,17.870,115.780)
C1': (-11.053,17.785,114.332)
C5': (-11.471,18.724,117.723)
O4': (-10.689,18.581,115.447)
C8: (-9.585,16.077,115.504)
O2': (-13.070,18.811,113.530)
C6: (-9.769,13.143,113.584)
C5: (-9.793,14.384,114.241)
C4: (-10.560,15.384,113.671)
P: (-10.379,17.033,119.419)
C4': (-11.858,18.850,116.265)
C2': (-12.581,17.731,114.300)
C2: (-11.184,14.082,112.015)
N1: (-10.488,13.022,112.449)
N3: (-11.288,15.299,112.547)
N6: (-9.079,12.086,114.020)
N7: (-9.181,14.835,115.400)
N9: (-10.424,16.474,114.495)
O5': (-10.952,17.420,117.983)
O3': (-14.218,18.434,115.949)
Image (generated by PyMOL):