Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DI2:C8:C9
Extra
PDB:
ATOM 1 O3' G A 7 25.921 -4.323 26.058 1.00 28.02 O
ATOM 2 P C A 8 27.478 -4.330 26.463 1.00 33.47 P
ATOM 3 OP1 C A 8 27.579 -5.183 27.680 1.00 30.43 O
ATOM 4 OP2 C A 8 28.004 -2.943 26.490 1.00 31.30 O
ATOM 5 O5' C A 8 28.192 -5.061 25.240 1.00 29.02 O
ATOM 6 C5' C A 8 27.884 -6.410 24.912 1.00 26.27 C
ATOM 7 C4' C A 8 28.444 -6.748 23.551 1.00 27.52 C
ATOM 8 O4' C A 8 27.785 -5.932 22.546 1.00 25.42 O
ATOM 9 C3' C A 8 29.919 -6.443 23.348 1.00 26.44 C
ATOM 10 O3' C A 8 30.732 -7.485 23.864 1.00 29.74 O
ATOM 11 C2' C A 8 30.004 -6.365 21.833 1.00 27.81 C
ATOM 12 O2' C A 8 29.983 -7.643 21.237 1.00 24.89 O
ATOM 13 C1' C A 8 28.704 -5.626 21.507 1.00 26.98 C
ATOM 14 N1 C A 8 28.917 -4.171 21.475 1.00 27.42 N
ATOM 15 C2 C A 8 29.438 -3.611 20.312 1.00 26.40 C
ATOM 16 O2 C A 8 29.674 -4.354 19.349 1.00 25.91 O
ATOM 17 N3 C A 8 29.669 -2.281 20.261 1.00 26.90 N
ATOM 18 C4 C A 8 29.388 -1.511 21.319 1.00 28.08 C
ATOM 19 N4 C A 8 29.627 -0.194 21.216 1.00 27.54 N
ATOM 20 C5 C A 8 28.847 -2.052 22.522 1.00 26.03 C
ATOM 21 C6 C A 8 28.627 -3.380 22.557 1.00 26.63 C
ATOM 22 P C A 9 32.181 -7.137 24.460 1.00 31.06 P
ATOM 23 OP1 C A 9 32.699 -8.414 25.007 1.00 31.52 O
ATOM 24 OP2 C A 9 32.062 -5.950 25.349 1.00 32.25 O
ATOM 25 O5' C A 9 33.046 -6.736 23.183 1.00 29.14 O
TER
ATOM 1 O3' C B 8 30.732 -7.485 23.864 1.00 29.74 O
ATOM 2 P C B 9 32.181 -7.137 24.460 1.00 31.06 P
ATOM 3 OP1 C B 9 32.699 -8.414 25.007 1.00 31.52 O
ATOM 4 OP2 C B 9 32.062 -5.950 25.349 1.00 32.25 O
ATOM 5 O5' C B 9 33.046 -6.736 23.183 1.00 29.14 O
ATOM 6 C5' C B 9 33.255 -7.682 22.137 1.00 24.59 C
ATOM 7 C4' C B 9 33.927 -7.029 20.951 1.00 26.71 C
ATOM 8 O4' C B 9 33.077 -6.001 20.389 1.00 26.74 O
ATOM 9 C3' C B 9 35.229 -6.293 21.210 1.00 27.61 C
ATOM 10 O3' C B 9 36.351 -7.155 21.430 1.00 33.12 O
ATOM 11 C2' C B 9 35.346 -5.425 19.964 1.00 25.62 C
ATOM 12 O2' C B 9 35.805 -6.142 18.839 1.00 27.10 O
ATOM 13 C1' C B 9 33.883 -5.039 19.723 1.00 26.01 C
ATOM 14 N1 C B 9 33.560 -3.702 20.246 1.00 27.14 N
ATOM 15 C2 C B 9 33.895 -2.587 19.476 1.00 28.00 C
ATOM 16 O2 C B 9 34.439 -2.766 18.374 1.00 30.60 O
ATOM 17 N3 C B 9 33.623 -1.347 19.950 1.00 27.94 N
ATOM 18 C4 C B 9 33.043 -1.202 21.142 1.00 28.84 C
ATOM 19 N4 C B 9 32.813 0.042 21.576 1.00 26.79 N
ATOM 20 C5 C B 9 32.680 -2.323 21.945 1.00 26.08 C
ATOM 21 C6 C B 9 32.950 -3.545 21.460 1.00 26.35 C
TER
ATOM 2 P C A 8 27.478 -4.330 26.463 1.00 33.47 P
ATOM 3 OP1 C A 8 27.579 -5.183 27.680 1.00 30.43 O
ATOM 4 OP2 C A 8 28.004 -2.943 26.490 1.00 31.30 O
ATOM 5 O5' C A 8 28.192 -5.061 25.240 1.00 29.02 O
ATOM 6 C5' C A 8 27.884 -6.410 24.912 1.00 26.27 C
ATOM 7 C4' C A 8 28.444 -6.748 23.551 1.00 27.52 C
ATOM 8 O4' C A 8 27.785 -5.932 22.546 1.00 25.42 O
ATOM 9 C3' C A 8 29.919 -6.443 23.348 1.00 26.44 C
ATOM 10 O3' C A 8 30.732 -7.485 23.864 1.00 29.74 O
ATOM 11 C2' C A 8 30.004 -6.365 21.833 1.00 27.81 C
ATOM 12 O2' C A 8 29.983 -7.643 21.237 1.00 24.89 O
ATOM 13 C1' C A 8 28.704 -5.626 21.507 1.00 26.98 C
ATOM 14 N1 C A 8 28.917 -4.171 21.475 1.00 27.42 N
ATOM 15 C2 C A 8 29.438 -3.611 20.312 1.00 26.40 C
ATOM 16 O2 C A 8 29.674 -4.354 19.349 1.00 25.91 O
ATOM 17 N3 C A 8 29.669 -2.281 20.261 1.00 26.90 N
ATOM 18 C4 C A 8 29.388 -1.511 21.319 1.00 28.08 C
ATOM 19 N4 C A 8 29.627 -0.194 21.216 1.00 27.54 N
ATOM 20 C5 C A 8 28.847 -2.052 22.522 1.00 26.03 C
ATOM 21 C6 C A 8 28.627 -3.380 22.557 1.00 26.63 C
ATOM 22 P C A 9 32.181 -7.137 24.460 1.00 31.06 P
ATOM 23 OP1 C A 9 32.699 -8.414 25.007 1.00 31.52 O
ATOM 24 OP2 C A 9 32.062 -5.950 25.349 1.00 32.25 O
ATOM 25 O5' C A 9 33.046 -6.736 23.183 1.00 29.14 O
TER
ATOM 1 O3' C B 8 30.732 -7.485 23.864 1.00 29.74 O
ATOM 2 P C B 9 32.181 -7.137 24.460 1.00 31.06 P
ATOM 3 OP1 C B 9 32.699 -8.414 25.007 1.00 31.52 O
ATOM 4 OP2 C B 9 32.062 -5.950 25.349 1.00 32.25 O
ATOM 5 O5' C B 9 33.046 -6.736 23.183 1.00 29.14 O
ATOM 6 C5' C B 9 33.255 -7.682 22.137 1.00 24.59 C
ATOM 7 C4' C B 9 33.927 -7.029 20.951 1.00 26.71 C
ATOM 8 O4' C B 9 33.077 -6.001 20.389 1.00 26.74 O
ATOM 9 C3' C B 9 35.229 -6.293 21.210 1.00 27.61 C
ATOM 10 O3' C B 9 36.351 -7.155 21.430 1.00 33.12 O
ATOM 11 C2' C B 9 35.346 -5.425 19.964 1.00 25.62 C
ATOM 12 O2' C B 9 35.805 -6.142 18.839 1.00 27.10 O
ATOM 13 C1' C B 9 33.883 -5.039 19.723 1.00 26.01 C
ATOM 14 N1 C B 9 33.560 -3.702 20.246 1.00 27.14 N
ATOM 15 C2 C B 9 33.895 -2.587 19.476 1.00 28.00 C
ATOM 16 O2 C B 9 34.439 -2.766 18.374 1.00 30.60 O
ATOM 17 N3 C B 9 33.623 -1.347 19.950 1.00 27.94 N
ATOM 18 C4 C B 9 33.043 -1.202 21.142 1.00 28.84 C
ATOM 19 N4 C B 9 32.813 0.042 21.576 1.00 26.79 N
ATOM 20 C5 C B 9 32.680 -2.323 21.945 1.00 26.08 C
ATOM 21 C6 C B 9 32.950 -3.545 21.460 1.00 26.35 C
TER
Atoms:
C2: (29.438,-3.611,20.312)
OP1: (27.579,-5.183,27.680)
OP2: (28.004,-2.943,26.490)
C4: (29.388,-1.511,21.319)
O5': (28.192,-5.061,25.240)
C3': (29.919,-6.443,23.348)
C1': (28.704,-5.626,21.507)
O4': (27.785,-5.932,22.546)
C5': (27.884,-6.410,24.912)
P: (27.478,-4.330,26.463)
O2: (29.674,-4.354,19.349)
C4': (28.444,-6.748,23.551)
C2': (30.004,-6.365,21.833)
O2': (29.983,-7.643,21.237)
N1: (28.917,-4.171,21.475)
N3: (29.669,-2.281,20.261)
N4: (29.627,-0.194,21.216)
C6: (28.627,-3.380,22.557)
C5: (28.847,-2.052,22.522)
O3': (30.732,-7.485,23.864)
OP1: (27.579,-5.183,27.680)
OP2: (28.004,-2.943,26.490)
C4: (29.388,-1.511,21.319)
O5': (28.192,-5.061,25.240)
C3': (29.919,-6.443,23.348)
C1': (28.704,-5.626,21.507)
O4': (27.785,-5.932,22.546)
C5': (27.884,-6.410,24.912)
P: (27.478,-4.330,26.463)
O2: (29.674,-4.354,19.349)
C4': (28.444,-6.748,23.551)
C2': (30.004,-6.365,21.833)
O2': (29.983,-7.643,21.237)
N1: (28.917,-4.171,21.475)
N3: (29.669,-2.281,20.261)
N4: (29.627,-0.194,21.216)
C6: (28.627,-3.380,22.557)
C5: (28.847,-2.052,22.522)
O3': (30.732,-7.485,23.864)
C2: (33.895,-2.587,19.476)
OP1: (32.699,-8.414,25.007)
OP2: (32.062,-5.950,25.349)
C4: (33.043,-1.202,21.142)
O5': (33.046,-6.736,23.183)
C3': (35.229,-6.293,21.210)
C1': (33.883,-5.039,19.723)
O4': (33.077,-6.001,20.389)
C5': (33.255,-7.682,22.137)
P: (32.181,-7.137,24.460)
O2: (34.439,-2.766,18.374)
C4': (33.927,-7.029,20.951)
C2': (35.346,-5.425,19.964)
O2': (35.805,-6.142,18.839)
N1: (33.560,-3.702,20.246)
N3: (33.623,-1.347,19.950)
N4: (32.813,0.042,21.576)
C6: (32.950,-3.545,21.460)
C5: (32.680,-2.323,21.945)
O3': (36.351,-7.155,21.430)
OP1: (32.699,-8.414,25.007)
OP2: (32.062,-5.950,25.349)
C4: (33.043,-1.202,21.142)
O5': (33.046,-6.736,23.183)
C3': (35.229,-6.293,21.210)
C1': (33.883,-5.039,19.723)
O4': (33.077,-6.001,20.389)
C5': (33.255,-7.682,22.137)
P: (32.181,-7.137,24.460)
O2: (34.439,-2.766,18.374)
C4': (33.927,-7.029,20.951)
C2': (35.346,-5.425,19.964)
O2': (35.805,-6.142,18.839)
N1: (33.560,-3.702,20.246)
N3: (33.623,-1.347,19.950)
N4: (32.813,0.042,21.576)
C6: (32.950,-3.545,21.460)
C5: (32.680,-2.323,21.945)
O3': (36.351,-7.155,21.430)
Image (generated by PyMOL):