Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0232:0233
Extra
PDB:
ATOM 1 O3' A A 231 93.552 104.071 -1.256 1.00 57.67 O
ATOM 2 P C A 232 94.366 105.108 -2.174 1.00 59.66 P
ATOM 3 OP1 C A 232 95.611 104.422 -2.619 1.00 57.23 O
ATOM 4 OP2 C A 232 94.460 106.412 -1.478 1.00 60.05 O
ATOM 5 O5' C A 232 93.407 105.314 -3.421 1.00 57.64 O
ATOM 6 C5' C A 232 93.001 104.197 -4.222 1.00 57.83 C
ATOM 7 C4' C A 232 91.918 104.624 -5.169 1.00 57.17 C
ATOM 8 O4' C A 232 90.688 104.848 -4.433 1.00 56.44 O
ATOM 9 C3' C A 232 92.203 105.956 -5.831 1.00 56.82 C
ATOM 10 O3' C A 232 93.100 105.824 -6.921 1.00 57.89 O
ATOM 11 C2' C A 232 90.809 106.452 -6.183 1.00 56.06 C
ATOM 12 O2' C A 232 90.272 105.844 -7.337 1.00 56.60 O
ATOM 13 C1' C A 232 90.025 105.992 -4.950 1.00 54.76 C
ATOM 14 N1 C A 232 89.987 107.014 -3.890 1.00 51.55 N
ATOM 15 C2 C A 232 88.945 107.934 -3.887 1.00 49.71 C
ATOM 16 O2 C A 232 88.072 107.847 -4.757 1.00 49.93 O
ATOM 17 N3 C A 232 88.911 108.893 -2.936 1.00 49.78 N
ATOM 18 C4 C A 232 89.868 108.943 -2.005 1.00 49.64 C
ATOM 19 N4 C A 232 89.800 109.907 -1.087 1.00 49.77 N
ATOM 20 C5 C A 232 90.939 108.006 -1.976 1.00 48.75 C
ATOM 21 C6 C A 232 90.960 107.069 -2.926 1.00 50.72 C
ATOM 22 P C A 233 94.037 107.063 -7.321 1.00 57.73 P
ATOM 23 OP1 C A 233 94.936 106.593 -8.399 1.00 58.80 O
ATOM 24 OP2 C A 233 94.618 107.656 -6.096 1.00 57.39 O
ATOM 25 O5' C A 233 92.977 108.083 -7.923 1.00 56.57 O
TER
ATOM 1 O3' C B 232 93.100 105.824 -6.921 1.00 57.89 O
ATOM 2 P C B 233 94.037 107.063 -7.321 1.00 57.73 P
ATOM 3 OP1 C B 233 94.936 106.593 -8.399 1.00 58.80 O
ATOM 4 OP2 C B 233 94.618 107.656 -6.096 1.00 57.39 O
ATOM 5 O5' C B 233 92.977 108.083 -7.923 1.00 56.57 O
ATOM 6 C5' C B 233 93.218 109.483 -7.924 1.00 56.97 C
ATOM 7 C4' C B 233 91.950 110.215 -8.265 1.00 57.81 C
ATOM 8 O4' C B 233 90.963 109.991 -7.227 1.00 59.04 O
ATOM 9 C3' C B 233 92.109 111.718 -8.303 1.00 59.04 C
ATOM 10 O3' C B 233 92.669 112.126 -9.539 1.00 60.74 O
ATOM 11 C2' C B 233 90.691 112.205 -8.048 1.00 58.58 C
ATOM 12 O2' C B 233 89.852 112.137 -9.182 1.00 57.47 O
ATOM 13 C1' C B 233 90.224 111.188 -7.003 1.00 58.60 C
ATOM 14 N1 C B 233 90.469 111.646 -5.613 1.00 58.26 N
ATOM 15 C2 C B 233 89.666 112.676 -5.088 1.00 57.21 C
ATOM 16 O2 C B 233 88.750 113.146 -5.787 1.00 55.36 O
ATOM 17 N3 C B 233 89.907 113.125 -3.836 1.00 56.98 N
ATOM 18 C4 C B 233 90.889 112.585 -3.110 1.00 56.97 C
ATOM 19 N4 C B 233 91.091 113.068 -1.883 1.00 57.59 N
ATOM 20 C5 C B 233 91.706 111.528 -3.609 1.00 55.26 C
ATOM 21 C6 C B 233 91.465 111.094 -4.850 1.00 56.48 C
ATOM 22 P G B 234 94.151 112.746 -9.561 1.00 62.42 P
ATOM 23 OP1 G B 234 94.476 113.130 -10.965 1.00 64.66 O
ATOM 24 OP2 G B 234 95.046 111.805 -8.830 1.00 59.26 O
ATOM 25 O5' G B 234 93.972 114.077 -8.714 1.00 59.27 O
TER
ATOM 2 P C A 232 94.366 105.108 -2.174 1.00 59.66 P
ATOM 3 OP1 C A 232 95.611 104.422 -2.619 1.00 57.23 O
ATOM 4 OP2 C A 232 94.460 106.412 -1.478 1.00 60.05 O
ATOM 5 O5' C A 232 93.407 105.314 -3.421 1.00 57.64 O
ATOM 6 C5' C A 232 93.001 104.197 -4.222 1.00 57.83 C
ATOM 7 C4' C A 232 91.918 104.624 -5.169 1.00 57.17 C
ATOM 8 O4' C A 232 90.688 104.848 -4.433 1.00 56.44 O
ATOM 9 C3' C A 232 92.203 105.956 -5.831 1.00 56.82 C
ATOM 10 O3' C A 232 93.100 105.824 -6.921 1.00 57.89 O
ATOM 11 C2' C A 232 90.809 106.452 -6.183 1.00 56.06 C
ATOM 12 O2' C A 232 90.272 105.844 -7.337 1.00 56.60 O
ATOM 13 C1' C A 232 90.025 105.992 -4.950 1.00 54.76 C
ATOM 14 N1 C A 232 89.987 107.014 -3.890 1.00 51.55 N
ATOM 15 C2 C A 232 88.945 107.934 -3.887 1.00 49.71 C
ATOM 16 O2 C A 232 88.072 107.847 -4.757 1.00 49.93 O
ATOM 17 N3 C A 232 88.911 108.893 -2.936 1.00 49.78 N
ATOM 18 C4 C A 232 89.868 108.943 -2.005 1.00 49.64 C
ATOM 19 N4 C A 232 89.800 109.907 -1.087 1.00 49.77 N
ATOM 20 C5 C A 232 90.939 108.006 -1.976 1.00 48.75 C
ATOM 21 C6 C A 232 90.960 107.069 -2.926 1.00 50.72 C
ATOM 22 P C A 233 94.037 107.063 -7.321 1.00 57.73 P
ATOM 23 OP1 C A 233 94.936 106.593 -8.399 1.00 58.80 O
ATOM 24 OP2 C A 233 94.618 107.656 -6.096 1.00 57.39 O
ATOM 25 O5' C A 233 92.977 108.083 -7.923 1.00 56.57 O
TER
ATOM 1 O3' C B 232 93.100 105.824 -6.921 1.00 57.89 O
ATOM 2 P C B 233 94.037 107.063 -7.321 1.00 57.73 P
ATOM 3 OP1 C B 233 94.936 106.593 -8.399 1.00 58.80 O
ATOM 4 OP2 C B 233 94.618 107.656 -6.096 1.00 57.39 O
ATOM 5 O5' C B 233 92.977 108.083 -7.923 1.00 56.57 O
ATOM 6 C5' C B 233 93.218 109.483 -7.924 1.00 56.97 C
ATOM 7 C4' C B 233 91.950 110.215 -8.265 1.00 57.81 C
ATOM 8 O4' C B 233 90.963 109.991 -7.227 1.00 59.04 O
ATOM 9 C3' C B 233 92.109 111.718 -8.303 1.00 59.04 C
ATOM 10 O3' C B 233 92.669 112.126 -9.539 1.00 60.74 O
ATOM 11 C2' C B 233 90.691 112.205 -8.048 1.00 58.58 C
ATOM 12 O2' C B 233 89.852 112.137 -9.182 1.00 57.47 O
ATOM 13 C1' C B 233 90.224 111.188 -7.003 1.00 58.60 C
ATOM 14 N1 C B 233 90.469 111.646 -5.613 1.00 58.26 N
ATOM 15 C2 C B 233 89.666 112.676 -5.088 1.00 57.21 C
ATOM 16 O2 C B 233 88.750 113.146 -5.787 1.00 55.36 O
ATOM 17 N3 C B 233 89.907 113.125 -3.836 1.00 56.98 N
ATOM 18 C4 C B 233 90.889 112.585 -3.110 1.00 56.97 C
ATOM 19 N4 C B 233 91.091 113.068 -1.883 1.00 57.59 N
ATOM 20 C5 C B 233 91.706 111.528 -3.609 1.00 55.26 C
ATOM 21 C6 C B 233 91.465 111.094 -4.850 1.00 56.48 C
ATOM 22 P G B 234 94.151 112.746 -9.561 1.00 62.42 P
ATOM 23 OP1 G B 234 94.476 113.130 -10.965 1.00 64.66 O
ATOM 24 OP2 G B 234 95.046 111.805 -8.830 1.00 59.26 O
ATOM 25 O5' G B 234 93.972 114.077 -8.714 1.00 59.27 O
TER
Atoms:
C2: (88.945,107.934,-3.887)
OP1: (95.611,104.422,-2.619)
OP2: (94.460,106.412,-1.478)
C4: (89.868,108.943,-2.005)
O5': (93.407,105.314,-3.421)
C3': (92.203,105.956,-5.831)
C1': (90.025,105.992,-4.950)
O4': (90.688,104.848,-4.433)
C5': (93.001,104.197,-4.222)
P: (94.366,105.108,-2.174)
O2: (88.072,107.847,-4.757)
C4': (91.918,104.624,-5.169)
C2': (90.809,106.452,-6.183)
O2': (90.272,105.844,-7.337)
N1: (89.987,107.014,-3.890)
N3: (88.911,108.893,-2.936)
N4: (89.800,109.907,-1.087)
C6: (90.960,107.069,-2.926)
C5: (90.939,108.006,-1.976)
O3': (93.100,105.824,-6.921)
OP1: (95.611,104.422,-2.619)
OP2: (94.460,106.412,-1.478)
C4: (89.868,108.943,-2.005)
O5': (93.407,105.314,-3.421)
C3': (92.203,105.956,-5.831)
C1': (90.025,105.992,-4.950)
O4': (90.688,104.848,-4.433)
C5': (93.001,104.197,-4.222)
P: (94.366,105.108,-2.174)
O2: (88.072,107.847,-4.757)
C4': (91.918,104.624,-5.169)
C2': (90.809,106.452,-6.183)
O2': (90.272,105.844,-7.337)
N1: (89.987,107.014,-3.890)
N3: (88.911,108.893,-2.936)
N4: (89.800,109.907,-1.087)
C6: (90.960,107.069,-2.926)
C5: (90.939,108.006,-1.976)
O3': (93.100,105.824,-6.921)
C2: (89.666,112.676,-5.088)
OP1: (94.936,106.593,-8.399)
OP2: (94.618,107.656,-6.096)
C4: (90.889,112.585,-3.110)
O5': (92.977,108.083,-7.923)
C3': (92.109,111.718,-8.303)
C1': (90.224,111.188,-7.003)
O4': (90.963,109.991,-7.227)
C5': (93.218,109.483,-7.924)
P: (94.037,107.063,-7.321)
O2: (88.750,113.146,-5.787)
C4': (91.950,110.215,-8.265)
C2': (90.691,112.205,-8.048)
O2': (89.852,112.137,-9.182)
N1: (90.469,111.646,-5.613)
N3: (89.907,113.125,-3.836)
N4: (91.091,113.068,-1.883)
C6: (91.465,111.094,-4.850)
C5: (91.706,111.528,-3.609)
O3': (92.669,112.126,-9.539)
OP1: (94.936,106.593,-8.399)
OP2: (94.618,107.656,-6.096)
C4: (90.889,112.585,-3.110)
O5': (92.977,108.083,-7.923)
C3': (92.109,111.718,-8.303)
C1': (90.224,111.188,-7.003)
O4': (90.963,109.991,-7.227)
C5': (93.218,109.483,-7.924)
P: (94.037,107.063,-7.321)
O2: (88.750,113.146,-5.787)
C4': (91.950,110.215,-8.265)
C2': (90.691,112.205,-8.048)
O2': (89.852,112.137,-9.182)
N1: (90.469,111.646,-5.613)
N3: (89.907,113.125,-3.836)
N4: (91.091,113.068,-1.883)
C6: (91.465,111.094,-4.850)
C5: (91.706,111.528,-3.609)
O3': (92.669,112.126,-9.539)
Image (generated by PyMOL):