Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD5:A8:A9
Extra
PDB:
ATOM 1 O3' G A 7 -0.538 5.037 26.846 1.00 24.13 O
ATOM 2 P C A 8 0.125 3.898 25.928 1.00 26.19 P
ATOM 3 OP1 C A 8 1.580 3.956 26.232 1.00 28.12 O
ATOM 4 OP2 C A 8 -0.301 4.025 24.515 1.00 28.36 O
ATOM 5 O5' C A 8 -0.428 2.494 26.425 1.00 25.61 O
ATOM 6 C5' C A 8 -0.163 2.000 27.746 1.00 27.25 C
ATOM 7 C4' C A 8 -1.027 0.804 28.103 1.00 26.29 C
ATOM 8 O4' C A 8 -2.423 1.208 28.238 1.00 24.99 O
ATOM 9 C3' C A 8 -1.040 -0.300 27.045 1.00 25.89 C
ATOM 10 O3' C A 8 0.097 -1.139 27.216 1.00 27.82 O
ATOM 11 C2' C A 8 -2.355 -1.009 27.395 1.00 26.06 C
ATOM 12 O2' C A 8 -2.231 -1.816 28.567 1.00 29.28 O
ATOM 13 C1' C A 8 -3.266 0.197 27.670 1.00 26.17 C
ATOM 14 N1 C A 8 -3.963 0.715 26.490 1.00 23.96 N
ATOM 15 C2 C A 8 -5.126 0.037 26.071 1.00 24.86 C
ATOM 16 O2 C A 8 -5.474 -0.979 26.724 1.00 25.16 O
ATOM 17 N3 C A 8 -5.780 0.470 24.961 1.00 21.99 N
ATOM 18 C4 C A 8 -5.425 1.571 24.303 1.00 22.66 C
ATOM 19 N4 C A 8 -6.146 1.959 23.221 1.00 21.24 N
ATOM 20 C5 C A 8 -4.222 2.260 24.674 1.00 21.19 C
ATOM 21 C6 C A 8 -3.528 1.782 25.748 1.00 22.77 C
ATOM 22 P C A 9 0.749 -1.891 25.947 1.00 29.18 P
ATOM 23 OP1 C A 9 2.045 -2.501 26.369 1.00 31.65 O
ATOM 24 OP2 C A 9 0.780 -0.979 24.761 1.00 28.51 O
ATOM 25 O5' C A 9 -0.356 -2.986 25.595 1.00 28.49 O
TER
ATOM 1 O3' C B 8 0.097 -1.139 27.216 1.00 27.82 O
ATOM 2 P C B 9 0.749 -1.891 25.947 1.00 29.18 P
ATOM 3 OP1 C B 9 2.045 -2.501 26.369 1.00 31.65 O
ATOM 4 OP2 C B 9 0.780 -0.979 24.761 1.00 28.51 O
ATOM 5 O5' C B 9 -0.356 -2.986 25.595 1.00 28.49 O
ATOM 6 C5' C B 9 -0.575 -4.115 26.458 1.00 28.51 C
ATOM 7 C4' C B 9 -1.734 -4.950 25.956 1.00 26.67 C
ATOM 8 O4' C B 9 -2.952 -4.133 25.923 1.00 26.48 O
ATOM 9 C3' C B 9 -1.608 -5.506 24.543 1.00 25.92 C
ATOM 10 O3' C B 9 -0.814 -6.694 24.521 1.00 26.97 O
ATOM 11 C2' C B 9 -3.081 -5.841 24.259 1.00 23.44 C
ATOM 12 O2' C B 9 -3.521 -7.047 24.880 1.00 29.39 O
ATOM 13 C1' C B 9 -3.771 -4.616 24.828 1.00 23.94 C
ATOM 14 N1 C B 9 -4.050 -3.534 23.887 1.00 23.57 N
ATOM 15 C2 C B 9 -5.097 -3.644 22.949 1.00 22.89 C
ATOM 16 O2 C B 9 -5.726 -4.724 22.941 1.00 22.72 O
ATOM 17 N3 C B 9 -5.370 -2.648 22.062 1.00 21.36 N
ATOM 18 C4 C B 9 -4.663 -1.508 22.111 1.00 22.97 C
ATOM 19 N4 C B 9 -4.967 -0.494 21.270 1.00 20.73 N
ATOM 20 C5 C B 9 -3.524 -1.389 22.961 1.00 24.76 C
ATOM 21 C6 C B 9 -3.252 -2.411 23.811 1.00 24.36 C
ATOM 22 P C B 10 0.071 -6.964 23.194 1.00 27.51 P
ATOM 23 OP1 C B 10 0.817 -8.245 23.412 1.00 33.01 O
ATOM 24 OP2 C B 10 0.774 -5.688 22.875 1.00 29.33 O
ATOM 25 O5' C B 10 -0.987 -7.249 22.029 1.00 24.50 O
TER
ATOM 2 P C A 8 0.125 3.898 25.928 1.00 26.19 P
ATOM 3 OP1 C A 8 1.580 3.956 26.232 1.00 28.12 O
ATOM 4 OP2 C A 8 -0.301 4.025 24.515 1.00 28.36 O
ATOM 5 O5' C A 8 -0.428 2.494 26.425 1.00 25.61 O
ATOM 6 C5' C A 8 -0.163 2.000 27.746 1.00 27.25 C
ATOM 7 C4' C A 8 -1.027 0.804 28.103 1.00 26.29 C
ATOM 8 O4' C A 8 -2.423 1.208 28.238 1.00 24.99 O
ATOM 9 C3' C A 8 -1.040 -0.300 27.045 1.00 25.89 C
ATOM 10 O3' C A 8 0.097 -1.139 27.216 1.00 27.82 O
ATOM 11 C2' C A 8 -2.355 -1.009 27.395 1.00 26.06 C
ATOM 12 O2' C A 8 -2.231 -1.816 28.567 1.00 29.28 O
ATOM 13 C1' C A 8 -3.266 0.197 27.670 1.00 26.17 C
ATOM 14 N1 C A 8 -3.963 0.715 26.490 1.00 23.96 N
ATOM 15 C2 C A 8 -5.126 0.037 26.071 1.00 24.86 C
ATOM 16 O2 C A 8 -5.474 -0.979 26.724 1.00 25.16 O
ATOM 17 N3 C A 8 -5.780 0.470 24.961 1.00 21.99 N
ATOM 18 C4 C A 8 -5.425 1.571 24.303 1.00 22.66 C
ATOM 19 N4 C A 8 -6.146 1.959 23.221 1.00 21.24 N
ATOM 20 C5 C A 8 -4.222 2.260 24.674 1.00 21.19 C
ATOM 21 C6 C A 8 -3.528 1.782 25.748 1.00 22.77 C
ATOM 22 P C A 9 0.749 -1.891 25.947 1.00 29.18 P
ATOM 23 OP1 C A 9 2.045 -2.501 26.369 1.00 31.65 O
ATOM 24 OP2 C A 9 0.780 -0.979 24.761 1.00 28.51 O
ATOM 25 O5' C A 9 -0.356 -2.986 25.595 1.00 28.49 O
TER
ATOM 1 O3' C B 8 0.097 -1.139 27.216 1.00 27.82 O
ATOM 2 P C B 9 0.749 -1.891 25.947 1.00 29.18 P
ATOM 3 OP1 C B 9 2.045 -2.501 26.369 1.00 31.65 O
ATOM 4 OP2 C B 9 0.780 -0.979 24.761 1.00 28.51 O
ATOM 5 O5' C B 9 -0.356 -2.986 25.595 1.00 28.49 O
ATOM 6 C5' C B 9 -0.575 -4.115 26.458 1.00 28.51 C
ATOM 7 C4' C B 9 -1.734 -4.950 25.956 1.00 26.67 C
ATOM 8 O4' C B 9 -2.952 -4.133 25.923 1.00 26.48 O
ATOM 9 C3' C B 9 -1.608 -5.506 24.543 1.00 25.92 C
ATOM 10 O3' C B 9 -0.814 -6.694 24.521 1.00 26.97 O
ATOM 11 C2' C B 9 -3.081 -5.841 24.259 1.00 23.44 C
ATOM 12 O2' C B 9 -3.521 -7.047 24.880 1.00 29.39 O
ATOM 13 C1' C B 9 -3.771 -4.616 24.828 1.00 23.94 C
ATOM 14 N1 C B 9 -4.050 -3.534 23.887 1.00 23.57 N
ATOM 15 C2 C B 9 -5.097 -3.644 22.949 1.00 22.89 C
ATOM 16 O2 C B 9 -5.726 -4.724 22.941 1.00 22.72 O
ATOM 17 N3 C B 9 -5.370 -2.648 22.062 1.00 21.36 N
ATOM 18 C4 C B 9 -4.663 -1.508 22.111 1.00 22.97 C
ATOM 19 N4 C B 9 -4.967 -0.494 21.270 1.00 20.73 N
ATOM 20 C5 C B 9 -3.524 -1.389 22.961 1.00 24.76 C
ATOM 21 C6 C B 9 -3.252 -2.411 23.811 1.00 24.36 C
ATOM 22 P C B 10 0.071 -6.964 23.194 1.00 27.51 P
ATOM 23 OP1 C B 10 0.817 -8.245 23.412 1.00 33.01 O
ATOM 24 OP2 C B 10 0.774 -5.688 22.875 1.00 29.33 O
ATOM 25 O5' C B 10 -0.987 -7.249 22.029 1.00 24.50 O
TER
Atoms:
C2: (-5.126,0.037,26.071)
OP1: (1.580,3.956,26.232)
OP2: (-0.301,4.025,24.515)
C4: (-5.425,1.571,24.303)
O5': (-0.428,2.494,26.425)
C3': (-1.040,-0.300,27.045)
C1': (-3.266,0.197,27.670)
O4': (-2.423,1.208,28.238)
C5': (-0.163,2.000,27.746)
P: (0.125,3.898,25.928)
O2: (-5.474,-0.979,26.724)
C4': (-1.027,0.804,28.103)
C2': (-2.355,-1.009,27.395)
O2': (-2.231,-1.816,28.567)
N1: (-3.963,0.715,26.490)
N3: (-5.780,0.470,24.961)
N4: (-6.146,1.959,23.221)
C6: (-3.528,1.782,25.748)
C5: (-4.222,2.260,24.674)
O3': (0.097,-1.139,27.216)
OP1: (1.580,3.956,26.232)
OP2: (-0.301,4.025,24.515)
C4: (-5.425,1.571,24.303)
O5': (-0.428,2.494,26.425)
C3': (-1.040,-0.300,27.045)
C1': (-3.266,0.197,27.670)
O4': (-2.423,1.208,28.238)
C5': (-0.163,2.000,27.746)
P: (0.125,3.898,25.928)
O2: (-5.474,-0.979,26.724)
C4': (-1.027,0.804,28.103)
C2': (-2.355,-1.009,27.395)
O2': (-2.231,-1.816,28.567)
N1: (-3.963,0.715,26.490)
N3: (-5.780,0.470,24.961)
N4: (-6.146,1.959,23.221)
C6: (-3.528,1.782,25.748)
C5: (-4.222,2.260,24.674)
O3': (0.097,-1.139,27.216)
C2: (-5.097,-3.644,22.949)
OP1: (2.045,-2.501,26.369)
OP2: (0.780,-0.979,24.761)
C4: (-4.663,-1.508,22.111)
O5': (-0.356,-2.986,25.595)
C3': (-1.608,-5.506,24.543)
C1': (-3.771,-4.616,24.828)
O4': (-2.952,-4.133,25.923)
C5': (-0.575,-4.115,26.458)
P: (0.749,-1.891,25.947)
O2: (-5.726,-4.724,22.941)
C4': (-1.734,-4.950,25.956)
C2': (-3.081,-5.841,24.259)
O2': (-3.521,-7.047,24.880)
N1: (-4.050,-3.534,23.887)
N3: (-5.370,-2.648,22.062)
N4: (-4.967,-0.494,21.270)
C6: (-3.252,-2.411,23.811)
C5: (-3.524,-1.389,22.961)
O3': (-0.814,-6.694,24.521)
OP1: (2.045,-2.501,26.369)
OP2: (0.780,-0.979,24.761)
C4: (-4.663,-1.508,22.111)
O5': (-0.356,-2.986,25.595)
C3': (-1.608,-5.506,24.543)
C1': (-3.771,-4.616,24.828)
O4': (-2.952,-4.133,25.923)
C5': (-0.575,-4.115,26.458)
P: (0.749,-1.891,25.947)
O2: (-5.726,-4.724,22.941)
C4': (-1.734,-4.950,25.956)
C2': (-3.081,-5.841,24.259)
O2': (-3.521,-7.047,24.880)
N1: (-4.050,-3.534,23.887)
N3: (-5.370,-2.648,22.062)
N4: (-4.967,-0.494,21.270)
C6: (-3.252,-2.411,23.811)
C5: (-3.524,-1.389,22.961)
O3': (-0.814,-6.694,24.521)
Image (generated by PyMOL):