Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2XD0:U17:U18
Extra
PDB:
ATOM 1 O3' A A 16 1.876 -9.313 5.810 1.00 96.22 O
ATOM 2 P C A 17 2.887 -8.945 4.598 1.00 97.62 P
ATOM 3 OP1 C A 17 3.399 -7.554 4.770 1.00 94.94 O
ATOM 4 OP2 C A 17 2.241 -9.310 3.304 1.00100.55 O
ATOM 5 O5' C A 17 4.053 -9.948 4.989 1.00100.46 O
ATOM 6 C5' C A 17 4.528 -9.941 6.323 1.00 99.09 C
ATOM 7 C4' C A 17 4.963 -11.321 6.741 1.00102.03 C
ATOM 8 O4' C A 17 3.872 -12.261 6.589 1.00103.66 O
ATOM 9 C3' C A 17 6.070 -11.947 5.916 1.00105.25 C
ATOM 10 O3' C A 17 7.343 -11.432 6.242 1.00105.30 O
ATOM 11 C2' C A 17 5.909 -13.422 6.236 1.00107.55 C
ATOM 12 O2' C A 17 6.406 -13.688 7.540 1.00106.78 O
ATOM 13 C1' C A 17 4.387 -13.538 6.283 1.00106.79 C
ATOM 14 N1 C A 17 3.770 -14.017 5.036 1.00109.57 N
ATOM 15 C2 C A 17 4.067 -15.304 4.582 1.00112.63 C
ATOM 16 O2 C A 17 4.852 -16.018 5.211 1.00112.84 O
ATOM 17 N3 C A 17 3.500 -15.756 3.451 1.00115.32 N
ATOM 18 C4 C A 17 2.659 -14.979 2.781 1.00115.33 C
ATOM 19 N4 C A 17 2.128 -15.487 1.667 1.00118.50 N
ATOM 20 C5 C A 17 2.330 -13.663 3.227 1.00112.06 C
ATOM 21 C6 C A 17 2.899 -13.222 4.354 1.00109.13 C
ATOM 22 P C A 18 8.075 -10.622 5.089 1.00106.17 P
ATOM 23 OP1 C A 18 6.999 -10.426 4.086 1.00105.20 O
ATOM 24 OP2 C A 18 8.770 -9.448 5.685 1.00104.15 O
ATOM 25 O5' C A 18 9.101 -11.710 4.574 1.00110.43 O
TER
ATOM 1 O3' C B 17 7.343 -11.432 6.242 1.00105.30 O
ATOM 2 P C B 18 8.075 -10.622 5.089 1.00106.17 P
ATOM 3 OP1 C B 18 6.999 -10.426 4.086 1.00105.20 O
ATOM 4 OP2 C B 18 8.770 -9.448 5.685 1.00104.15 O
ATOM 5 O5' C B 18 9.101 -11.710 4.574 1.00110.43 O
ATOM 6 C5' C B 18 9.724 -12.549 5.524 1.00112.35 C
ATOM 7 C4' C B 18 10.215 -13.801 4.863 1.00116.27 C
ATOM 8 O4' C B 18 9.104 -14.684 4.595 1.00115.79 O
ATOM 9 C3' C B 18 10.861 -13.572 3.516 1.00119.16 C
ATOM 10 O3' C B 18 12.219 -13.226 3.678 1.00121.83 O
ATOM 11 C2' C B 18 10.633 -14.884 2.778 1.00121.61 C
ATOM 12 O2' C B 18 11.679 -15.803 3.054 1.00124.65 O
ATOM 13 C1' C B 18 9.321 -15.387 3.395 1.00118.84 C
ATOM 14 N1 C B 18 8.096 -15.162 2.605 1.00117.82 N
ATOM 15 C2 C B 18 7.772 -16.001 1.526 1.00119.85 C
ATOM 16 O2 C B 18 8.532 -16.936 1.230 1.00122.25 O
ATOM 17 N3 C B 18 6.639 -15.768 0.818 1.00119.42 N
ATOM 18 C4 C B 18 5.840 -14.755 1.160 1.00116.97 C
ATOM 19 N4 C B 18 4.733 -14.557 0.441 1.00117.04 N
ATOM 20 C5 C B 18 6.143 -13.897 2.259 1.00114.42 C
ATOM 21 C6 C B 18 7.266 -14.134 2.953 1.00114.95 C
ATOM 22 P U B 19 12.877 -12.080 2.772 1.00129.08 P
ATOM 23 OP1 U B 19 14.063 -11.591 3.520 1.00137.90 O
ATOM 24 OP2 U B 19 11.805 -11.113 2.417 1.00119.22 O
ATOM 25 O5' U B 19 13.314 -12.921 1.481 1.00127.89 O
TER
ATOM 2 P C A 17 2.887 -8.945 4.598 1.00 97.62 P
ATOM 3 OP1 C A 17 3.399 -7.554 4.770 1.00 94.94 O
ATOM 4 OP2 C A 17 2.241 -9.310 3.304 1.00100.55 O
ATOM 5 O5' C A 17 4.053 -9.948 4.989 1.00100.46 O
ATOM 6 C5' C A 17 4.528 -9.941 6.323 1.00 99.09 C
ATOM 7 C4' C A 17 4.963 -11.321 6.741 1.00102.03 C
ATOM 8 O4' C A 17 3.872 -12.261 6.589 1.00103.66 O
ATOM 9 C3' C A 17 6.070 -11.947 5.916 1.00105.25 C
ATOM 10 O3' C A 17 7.343 -11.432 6.242 1.00105.30 O
ATOM 11 C2' C A 17 5.909 -13.422 6.236 1.00107.55 C
ATOM 12 O2' C A 17 6.406 -13.688 7.540 1.00106.78 O
ATOM 13 C1' C A 17 4.387 -13.538 6.283 1.00106.79 C
ATOM 14 N1 C A 17 3.770 -14.017 5.036 1.00109.57 N
ATOM 15 C2 C A 17 4.067 -15.304 4.582 1.00112.63 C
ATOM 16 O2 C A 17 4.852 -16.018 5.211 1.00112.84 O
ATOM 17 N3 C A 17 3.500 -15.756 3.451 1.00115.32 N
ATOM 18 C4 C A 17 2.659 -14.979 2.781 1.00115.33 C
ATOM 19 N4 C A 17 2.128 -15.487 1.667 1.00118.50 N
ATOM 20 C5 C A 17 2.330 -13.663 3.227 1.00112.06 C
ATOM 21 C6 C A 17 2.899 -13.222 4.354 1.00109.13 C
ATOM 22 P C A 18 8.075 -10.622 5.089 1.00106.17 P
ATOM 23 OP1 C A 18 6.999 -10.426 4.086 1.00105.20 O
ATOM 24 OP2 C A 18 8.770 -9.448 5.685 1.00104.15 O
ATOM 25 O5' C A 18 9.101 -11.710 4.574 1.00110.43 O
TER
ATOM 1 O3' C B 17 7.343 -11.432 6.242 1.00105.30 O
ATOM 2 P C B 18 8.075 -10.622 5.089 1.00106.17 P
ATOM 3 OP1 C B 18 6.999 -10.426 4.086 1.00105.20 O
ATOM 4 OP2 C B 18 8.770 -9.448 5.685 1.00104.15 O
ATOM 5 O5' C B 18 9.101 -11.710 4.574 1.00110.43 O
ATOM 6 C5' C B 18 9.724 -12.549 5.524 1.00112.35 C
ATOM 7 C4' C B 18 10.215 -13.801 4.863 1.00116.27 C
ATOM 8 O4' C B 18 9.104 -14.684 4.595 1.00115.79 O
ATOM 9 C3' C B 18 10.861 -13.572 3.516 1.00119.16 C
ATOM 10 O3' C B 18 12.219 -13.226 3.678 1.00121.83 O
ATOM 11 C2' C B 18 10.633 -14.884 2.778 1.00121.61 C
ATOM 12 O2' C B 18 11.679 -15.803 3.054 1.00124.65 O
ATOM 13 C1' C B 18 9.321 -15.387 3.395 1.00118.84 C
ATOM 14 N1 C B 18 8.096 -15.162 2.605 1.00117.82 N
ATOM 15 C2 C B 18 7.772 -16.001 1.526 1.00119.85 C
ATOM 16 O2 C B 18 8.532 -16.936 1.230 1.00122.25 O
ATOM 17 N3 C B 18 6.639 -15.768 0.818 1.00119.42 N
ATOM 18 C4 C B 18 5.840 -14.755 1.160 1.00116.97 C
ATOM 19 N4 C B 18 4.733 -14.557 0.441 1.00117.04 N
ATOM 20 C5 C B 18 6.143 -13.897 2.259 1.00114.42 C
ATOM 21 C6 C B 18 7.266 -14.134 2.953 1.00114.95 C
ATOM 22 P U B 19 12.877 -12.080 2.772 1.00129.08 P
ATOM 23 OP1 U B 19 14.063 -11.591 3.520 1.00137.90 O
ATOM 24 OP2 U B 19 11.805 -11.113 2.417 1.00119.22 O
ATOM 25 O5' U B 19 13.314 -12.921 1.481 1.00127.89 O
TER
Atoms:
C2: (4.067,-15.304,4.582)
OP1: (3.399,-7.554,4.770)
OP2: (2.241,-9.310,3.304)
C4: (2.659,-14.979,2.781)
O5': (4.053,-9.948,4.989)
C3': (6.070,-11.947,5.916)
C1': (4.387,-13.538,6.283)
O4': (3.872,-12.261,6.589)
C5': (4.528,-9.941,6.323)
P: (2.887,-8.945,4.598)
O2: (4.852,-16.018,5.211)
C4': (4.963,-11.321,6.741)
C2': (5.909,-13.422,6.236)
O2': (6.406,-13.688,7.540)
N1: (3.770,-14.017,5.036)
N3: (3.500,-15.756,3.451)
N4: (2.128,-15.487,1.667)
C6: (2.899,-13.222,4.354)
C5: (2.330,-13.663,3.227)
O3': (7.343,-11.432,6.242)
OP1: (3.399,-7.554,4.770)
OP2: (2.241,-9.310,3.304)
C4: (2.659,-14.979,2.781)
O5': (4.053,-9.948,4.989)
C3': (6.070,-11.947,5.916)
C1': (4.387,-13.538,6.283)
O4': (3.872,-12.261,6.589)
C5': (4.528,-9.941,6.323)
P: (2.887,-8.945,4.598)
O2: (4.852,-16.018,5.211)
C4': (4.963,-11.321,6.741)
C2': (5.909,-13.422,6.236)
O2': (6.406,-13.688,7.540)
N1: (3.770,-14.017,5.036)
N3: (3.500,-15.756,3.451)
N4: (2.128,-15.487,1.667)
C6: (2.899,-13.222,4.354)
C5: (2.330,-13.663,3.227)
O3': (7.343,-11.432,6.242)
C2: (7.772,-16.001,1.526)
OP1: (6.999,-10.426,4.086)
OP2: (8.770,-9.448,5.685)
C4: (5.840,-14.755,1.160)
O5': (9.101,-11.710,4.574)
C3': (10.861,-13.572,3.516)
C1': (9.321,-15.387,3.395)
O4': (9.104,-14.684,4.595)
C5': (9.724,-12.549,5.524)
P: (8.075,-10.622,5.089)
O2: (8.532,-16.936,1.230)
C4': (10.215,-13.801,4.863)
C2': (10.633,-14.884,2.778)
O2': (11.679,-15.803,3.054)
N1: (8.096,-15.162,2.605)
N3: (6.639,-15.768,0.818)
N4: (4.733,-14.557,0.441)
C6: (7.266,-14.134,2.953)
C5: (6.143,-13.897,2.259)
O3': (12.219,-13.226,3.678)
OP1: (6.999,-10.426,4.086)
OP2: (8.770,-9.448,5.685)
C4: (5.840,-14.755,1.160)
O5': (9.101,-11.710,4.574)
C3': (10.861,-13.572,3.516)
C1': (9.321,-15.387,3.395)
O4': (9.104,-14.684,4.595)
C5': (9.724,-12.549,5.524)
P: (8.075,-10.622,5.089)
O2: (8.532,-16.936,1.230)
C4': (10.215,-13.801,4.863)
C2': (10.633,-14.884,2.778)
O2': (11.679,-15.803,3.054)
N1: (8.096,-15.162,2.605)
N3: (6.639,-15.768,0.818)
N4: (4.733,-14.557,0.441)
C6: (7.266,-14.134,2.953)
C5: (6.143,-13.897,2.259)
O3': (12.219,-13.226,3.678)
Image (generated by PyMOL):