Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A53:A54
Extra
PDB:
ATOM 1 O3' U A 52 -6.261 46.679 3.677 1.00 25.98 O
ATOM 2 P C A 53 -7.138 45.355 3.906 1.00 24.71 P
ATOM 3 OP1 C A 53 -7.344 44.748 2.564 1.00 28.92 O
ATOM 4 OP2 C A 53 -8.272 45.679 4.793 1.00 23.07 O
ATOM 5 O5' C A 53 -6.167 44.408 4.713 1.00 23.60 O
ATOM 6 C5' C A 53 -4.991 43.875 4.134 1.00 23.66 C
ATOM 7 C4' C A 53 -4.279 43.009 5.138 1.00 24.06 C
ATOM 8 O4' C A 53 -3.817 43.827 6.243 1.00 20.67 O
ATOM 9 C3' C A 53 -5.142 41.960 5.822 1.00 22.11 C
ATOM 10 O3' C A 53 -5.392 40.814 5.019 1.00 25.85 O
ATOM 11 C2' C A 53 -4.364 41.671 7.105 1.00 23.51 C
ATOM 12 O2' C A 53 -3.251 40.824 6.854 1.00 24.55 O
ATOM 13 C1' C A 53 -3.841 43.068 7.437 1.00 24.33 C
ATOM 14 N1 C A 53 -4.704 43.726 8.431 1.00 21.99 N
ATOM 15 C2 C A 53 -4.494 43.381 9.763 1.00 23.39 C
ATOM 16 O2 C A 53 -3.609 42.552 10.025 1.00 21.37 O
ATOM 17 N3 C A 53 -5.263 43.952 10.717 1.00 26.15 N
ATOM 18 C4 C A 53 -6.209 44.832 10.381 1.00 25.87 C
ATOM 19 N4 C A 53 -6.928 45.374 11.373 1.00 21.97 N
ATOM 20 C5 C A 53 -6.445 45.196 9.018 1.00 25.54 C
ATOM 21 C6 C A 53 -5.676 44.623 8.084 1.00 22.47 C
ATOM 22 P C A 54 -6.779 40.008 5.202 1.00 26.71 P
ATOM 23 OP1 C A 54 -6.760 38.961 4.167 1.00 24.99 O
ATOM 24 OP2 C A 54 -7.934 40.933 5.288 1.00 24.07 O
ATOM 25 O5' C A 54 -6.565 39.374 6.651 1.00 23.54 O
TER
ATOM 1 O3' C B 53 -5.392 40.814 5.019 1.00 25.85 O
ATOM 2 P C B 54 -6.779 40.008 5.202 1.00 26.71 P
ATOM 3 OP1 C B 54 -6.760 38.961 4.167 1.00 24.99 O
ATOM 4 OP2 C B 54 -7.934 40.933 5.288 1.00 24.07 O
ATOM 5 O5' C B 54 -6.565 39.374 6.651 1.00 23.54 O
ATOM 6 C5' C B 54 -5.518 38.450 6.909 1.00 22.17 C
ATOM 7 C4' C B 54 -5.561 38.015 8.352 1.00 24.34 C
ATOM 8 O4' C B 54 -5.254 39.148 9.219 1.00 22.74 O
ATOM 9 C3' C B 54 -6.931 37.548 8.821 1.00 21.12 C
ATOM 10 O3' C B 54 -7.180 36.204 8.461 1.00 22.76 O
ATOM 11 C2' C B 54 -6.857 37.788 10.322 1.00 24.10 C
ATOM 12 O2' C B 54 -6.124 36.750 10.943 1.00 23.08 O
ATOM 13 C1' C B 54 -6.024 39.072 10.392 1.00 22.23 C
ATOM 14 N1 C B 54 -6.883 40.263 10.518 1.00 23.54 N
ATOM 15 C2 C B 54 -7.077 40.753 11.807 1.00 24.98 C
ATOM 16 O2 C B 54 -6.488 40.151 12.713 1.00 26.34 O
ATOM 17 N3 C B 54 -7.887 41.822 12.007 1.00 26.34 N
ATOM 18 C4 C B 54 -8.487 42.397 10.951 1.00 27.74 C
ATOM 19 N4 C B 54 -9.271 43.458 11.149 1.00 32.59 N
ATOM 20 C5 C B 54 -8.304 41.917 9.624 1.00 25.31 C
ATOM 21 C6 C B 54 -7.510 40.851 9.452 1.00 24.04 C
ATOM 22 P A B 55 -8.636 35.660 8.014 1.00 25.36 P
ATOM 23 OP1 A B 55 -8.366 34.394 7.306 1.00 25.50 O
ATOM 24 OP2 A B 55 -9.384 36.739 7.335 1.00 25.57 O
ATOM 25 O5' A B 55 -9.319 35.372 9.421 1.00 24.76 O
TER
ATOM 2 P C A 53 -7.138 45.355 3.906 1.00 24.71 P
ATOM 3 OP1 C A 53 -7.344 44.748 2.564 1.00 28.92 O
ATOM 4 OP2 C A 53 -8.272 45.679 4.793 1.00 23.07 O
ATOM 5 O5' C A 53 -6.167 44.408 4.713 1.00 23.60 O
ATOM 6 C5' C A 53 -4.991 43.875 4.134 1.00 23.66 C
ATOM 7 C4' C A 53 -4.279 43.009 5.138 1.00 24.06 C
ATOM 8 O4' C A 53 -3.817 43.827 6.243 1.00 20.67 O
ATOM 9 C3' C A 53 -5.142 41.960 5.822 1.00 22.11 C
ATOM 10 O3' C A 53 -5.392 40.814 5.019 1.00 25.85 O
ATOM 11 C2' C A 53 -4.364 41.671 7.105 1.00 23.51 C
ATOM 12 O2' C A 53 -3.251 40.824 6.854 1.00 24.55 O
ATOM 13 C1' C A 53 -3.841 43.068 7.437 1.00 24.33 C
ATOM 14 N1 C A 53 -4.704 43.726 8.431 1.00 21.99 N
ATOM 15 C2 C A 53 -4.494 43.381 9.763 1.00 23.39 C
ATOM 16 O2 C A 53 -3.609 42.552 10.025 1.00 21.37 O
ATOM 17 N3 C A 53 -5.263 43.952 10.717 1.00 26.15 N
ATOM 18 C4 C A 53 -6.209 44.832 10.381 1.00 25.87 C
ATOM 19 N4 C A 53 -6.928 45.374 11.373 1.00 21.97 N
ATOM 20 C5 C A 53 -6.445 45.196 9.018 1.00 25.54 C
ATOM 21 C6 C A 53 -5.676 44.623 8.084 1.00 22.47 C
ATOM 22 P C A 54 -6.779 40.008 5.202 1.00 26.71 P
ATOM 23 OP1 C A 54 -6.760 38.961 4.167 1.00 24.99 O
ATOM 24 OP2 C A 54 -7.934 40.933 5.288 1.00 24.07 O
ATOM 25 O5' C A 54 -6.565 39.374 6.651 1.00 23.54 O
TER
ATOM 1 O3' C B 53 -5.392 40.814 5.019 1.00 25.85 O
ATOM 2 P C B 54 -6.779 40.008 5.202 1.00 26.71 P
ATOM 3 OP1 C B 54 -6.760 38.961 4.167 1.00 24.99 O
ATOM 4 OP2 C B 54 -7.934 40.933 5.288 1.00 24.07 O
ATOM 5 O5' C B 54 -6.565 39.374 6.651 1.00 23.54 O
ATOM 6 C5' C B 54 -5.518 38.450 6.909 1.00 22.17 C
ATOM 7 C4' C B 54 -5.561 38.015 8.352 1.00 24.34 C
ATOM 8 O4' C B 54 -5.254 39.148 9.219 1.00 22.74 O
ATOM 9 C3' C B 54 -6.931 37.548 8.821 1.00 21.12 C
ATOM 10 O3' C B 54 -7.180 36.204 8.461 1.00 22.76 O
ATOM 11 C2' C B 54 -6.857 37.788 10.322 1.00 24.10 C
ATOM 12 O2' C B 54 -6.124 36.750 10.943 1.00 23.08 O
ATOM 13 C1' C B 54 -6.024 39.072 10.392 1.00 22.23 C
ATOM 14 N1 C B 54 -6.883 40.263 10.518 1.00 23.54 N
ATOM 15 C2 C B 54 -7.077 40.753 11.807 1.00 24.98 C
ATOM 16 O2 C B 54 -6.488 40.151 12.713 1.00 26.34 O
ATOM 17 N3 C B 54 -7.887 41.822 12.007 1.00 26.34 N
ATOM 18 C4 C B 54 -8.487 42.397 10.951 1.00 27.74 C
ATOM 19 N4 C B 54 -9.271 43.458 11.149 1.00 32.59 N
ATOM 20 C5 C B 54 -8.304 41.917 9.624 1.00 25.31 C
ATOM 21 C6 C B 54 -7.510 40.851 9.452 1.00 24.04 C
ATOM 22 P A B 55 -8.636 35.660 8.014 1.00 25.36 P
ATOM 23 OP1 A B 55 -8.366 34.394 7.306 1.00 25.50 O
ATOM 24 OP2 A B 55 -9.384 36.739 7.335 1.00 25.57 O
ATOM 25 O5' A B 55 -9.319 35.372 9.421 1.00 24.76 O
TER
Atoms:
C2: (-4.494,43.381,9.763)
OP1: (-7.344,44.748,2.564)
OP2: (-8.272,45.679,4.793)
C4: (-6.209,44.832,10.381)
O5': (-6.167,44.408,4.713)
C3': (-5.142,41.960,5.822)
C1': (-3.841,43.068,7.437)
O4': (-3.817,43.827,6.243)
C5': (-4.991,43.875,4.134)
P: (-7.138,45.355,3.906)
O2: (-3.609,42.552,10.025)
C4': (-4.279,43.009,5.138)
C2': (-4.364,41.671,7.105)
O2': (-3.251,40.824,6.854)
N1: (-4.704,43.726,8.431)
N3: (-5.263,43.952,10.717)
N4: (-6.928,45.374,11.373)
C6: (-5.676,44.623,8.084)
C5: (-6.445,45.196,9.018)
O3': (-5.392,40.814,5.019)
OP1: (-7.344,44.748,2.564)
OP2: (-8.272,45.679,4.793)
C4: (-6.209,44.832,10.381)
O5': (-6.167,44.408,4.713)
C3': (-5.142,41.960,5.822)
C1': (-3.841,43.068,7.437)
O4': (-3.817,43.827,6.243)
C5': (-4.991,43.875,4.134)
P: (-7.138,45.355,3.906)
O2: (-3.609,42.552,10.025)
C4': (-4.279,43.009,5.138)
C2': (-4.364,41.671,7.105)
O2': (-3.251,40.824,6.854)
N1: (-4.704,43.726,8.431)
N3: (-5.263,43.952,10.717)
N4: (-6.928,45.374,11.373)
C6: (-5.676,44.623,8.084)
C5: (-6.445,45.196,9.018)
O3': (-5.392,40.814,5.019)
C2: (-7.077,40.753,11.807)
OP1: (-6.760,38.961,4.167)
OP2: (-7.934,40.933,5.288)
C4: (-8.487,42.397,10.951)
O5': (-6.565,39.374,6.651)
C3': (-6.931,37.548,8.821)
C1': (-6.024,39.072,10.392)
O4': (-5.254,39.148,9.219)
C5': (-5.518,38.450,6.909)
P: (-6.779,40.008,5.202)
O2: (-6.488,40.151,12.713)
C4': (-5.561,38.015,8.352)
C2': (-6.857,37.788,10.322)
O2': (-6.124,36.750,10.943)
N1: (-6.883,40.263,10.518)
N3: (-7.887,41.822,12.007)
N4: (-9.271,43.458,11.149)
C6: (-7.510,40.851,9.452)
C5: (-8.304,41.917,9.624)
O3': (-7.180,36.204,8.461)
OP1: (-6.760,38.961,4.167)
OP2: (-7.934,40.933,5.288)
C4: (-8.487,42.397,10.951)
O5': (-6.565,39.374,6.651)
C3': (-6.931,37.548,8.821)
C1': (-6.024,39.072,10.392)
O4': (-5.254,39.148,9.219)
C5': (-5.518,38.450,6.909)
P: (-6.779,40.008,5.202)
O2: (-6.488,40.151,12.713)
C4': (-5.561,38.015,8.352)
C2': (-6.857,37.788,10.322)
O2': (-6.124,36.750,10.943)
N1: (-6.883,40.263,10.518)
N3: (-7.887,41.822,12.007)
N4: (-9.271,43.458,11.149)
C6: (-7.510,40.851,9.452)
C5: (-8.304,41.917,9.624)
O3': (-7.180,36.204,8.461)
Image (generated by PyMOL):