Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1D4R:C8:C9
Extra
PDB:
ATOM 1 O3' U A 7 -8.026 -6.598 21.212 1.00 47.99 O
ATOM 2 P C A 8 -7.622 -6.677 22.757 1.00 55.21 P
ATOM 3 OP1 C A 8 -8.464 -7.737 23.348 1.00 46.43 O
ATOM 4 OP2 C A 8 -7.601 -5.318 23.368 1.00 41.94 O
ATOM 5 O5' C A 8 -6.128 -7.226 22.709 1.00 51.56 O
ATOM 6 C5' C A 8 -5.869 -8.543 22.230 1.00 52.30 C
ATOM 7 C4' C A 8 -4.383 -8.805 22.175 1.00 49.03 C
ATOM 8 O4' C A 8 -3.789 -7.999 21.120 1.00 48.49 O
ATOM 9 C3' C A 8 -3.575 -8.419 23.406 1.00 40.54 C
ATOM 10 O3' C A 8 -3.634 -9.401 24.422 1.00 42.49 O
ATOM 11 C2' C A 8 -2.180 -8.330 22.819 1.00 43.49 C
ATOM 12 O2' C A 8 -1.652 -9.603 22.518 1.00 36.43 O
ATOM 13 C1' C A 8 -2.482 -7.599 21.516 1.00 45.86 C
ATOM 14 N1 C A 8 -2.417 -6.127 21.669 1.00 40.66 N
ATOM 15 C2 C A 8 -1.158 -5.518 21.546 1.00 42.49 C
ATOM 16 O2 C A 8 -0.177 -6.227 21.283 1.00 47.96 O
ATOM 17 N3 C A 8 -1.045 -4.183 21.706 1.00 43.31 N
ATOM 18 C4 C A 8 -2.131 -3.447 21.960 1.00 42.34 C
ATOM 19 N4 C A 8 -1.970 -2.123 22.082 1.00 39.07 N
ATOM 20 C5 C A 8 -3.427 -4.034 22.089 1.00 41.38 C
ATOM 21 C6 C A 8 -3.523 -5.369 21.934 1.00 43.74 C
ATOM 22 P C A 9 -3.530 -8.959 25.961 1.00 46.40 P
ATOM 23 OP1 C A 9 -3.849 -10.172 26.757 1.00 34.62 O
ATOM 24 OP2 C A 9 -4.295 -7.710 26.195 1.00 42.47 O
ATOM 25 O5' C A 9 -1.986 -8.583 26.162 1.00 41.37 O
TER
ATOM 1 O3' C B 8 -3.634 -9.401 24.422 1.00 42.49 O
ATOM 2 P C B 9 -3.530 -8.959 25.961 1.00 46.40 P
ATOM 3 OP1 C B 9 -3.849 -10.172 26.757 1.00 34.62 O
ATOM 4 OP2 C B 9 -4.295 -7.710 26.195 1.00 42.47 O
ATOM 5 O5' C B 9 -1.986 -8.583 26.162 1.00 41.37 O
ATOM 6 C5' C B 9 -0.955 -9.534 25.898 1.00 43.36 C
ATOM 7 C4' C B 9 0.404 -8.851 25.849 1.00 34.08 C
ATOM 8 O4' C B 9 0.478 -7.957 24.716 1.00 34.31 O
ATOM 9 C3' C B 9 0.819 -7.993 27.034 1.00 29.19 C
ATOM 10 O3' C B 9 1.312 -8.801 28.112 1.00 34.56 O
ATOM 11 C2' C B 9 1.930 -7.156 26.415 1.00 38.40 C
ATOM 12 O2' C B 9 3.141 -7.862 26.260 1.00 37.88 O
ATOM 13 C1' C B 9 1.336 -6.866 25.040 1.00 43.26 C
ATOM 14 N1 C B 9 0.582 -5.593 25.047 1.00 43.17 N
ATOM 15 C2 C B 9 1.315 -4.402 24.978 1.00 46.70 C
ATOM 16 O2 C B 9 2.543 -4.468 24.877 1.00 41.17 O
ATOM 17 N3 C B 9 0.670 -3.214 25.022 1.00 44.64 N
ATOM 18 C4 C B 9 -0.659 -3.183 25.123 1.00 47.98 C
ATOM 19 N4 C B 9 -1.250 -1.985 25.176 1.00 40.15 N
ATOM 20 C5 C B 9 -1.440 -4.378 25.177 1.00 45.55 C
ATOM 21 C6 C B 9 -0.783 -5.554 25.136 1.00 49.94 C
ATOM 22 P C B 10 1.265 -8.254 29.622 1.00 37.01 P
ATOM 23 OP1 C B 10 1.682 -9.370 30.483 1.00 35.75 O
ATOM 24 OP2 C B 10 0.007 -7.531 29.918 1.00 38.74 O
ATOM 25 O5' C B 10 2.439 -7.165 29.688 1.00 35.57 O
TER
ATOM 2 P C A 8 -7.622 -6.677 22.757 1.00 55.21 P
ATOM 3 OP1 C A 8 -8.464 -7.737 23.348 1.00 46.43 O
ATOM 4 OP2 C A 8 -7.601 -5.318 23.368 1.00 41.94 O
ATOM 5 O5' C A 8 -6.128 -7.226 22.709 1.00 51.56 O
ATOM 6 C5' C A 8 -5.869 -8.543 22.230 1.00 52.30 C
ATOM 7 C4' C A 8 -4.383 -8.805 22.175 1.00 49.03 C
ATOM 8 O4' C A 8 -3.789 -7.999 21.120 1.00 48.49 O
ATOM 9 C3' C A 8 -3.575 -8.419 23.406 1.00 40.54 C
ATOM 10 O3' C A 8 -3.634 -9.401 24.422 1.00 42.49 O
ATOM 11 C2' C A 8 -2.180 -8.330 22.819 1.00 43.49 C
ATOM 12 O2' C A 8 -1.652 -9.603 22.518 1.00 36.43 O
ATOM 13 C1' C A 8 -2.482 -7.599 21.516 1.00 45.86 C
ATOM 14 N1 C A 8 -2.417 -6.127 21.669 1.00 40.66 N
ATOM 15 C2 C A 8 -1.158 -5.518 21.546 1.00 42.49 C
ATOM 16 O2 C A 8 -0.177 -6.227 21.283 1.00 47.96 O
ATOM 17 N3 C A 8 -1.045 -4.183 21.706 1.00 43.31 N
ATOM 18 C4 C A 8 -2.131 -3.447 21.960 1.00 42.34 C
ATOM 19 N4 C A 8 -1.970 -2.123 22.082 1.00 39.07 N
ATOM 20 C5 C A 8 -3.427 -4.034 22.089 1.00 41.38 C
ATOM 21 C6 C A 8 -3.523 -5.369 21.934 1.00 43.74 C
ATOM 22 P C A 9 -3.530 -8.959 25.961 1.00 46.40 P
ATOM 23 OP1 C A 9 -3.849 -10.172 26.757 1.00 34.62 O
ATOM 24 OP2 C A 9 -4.295 -7.710 26.195 1.00 42.47 O
ATOM 25 O5' C A 9 -1.986 -8.583 26.162 1.00 41.37 O
TER
ATOM 1 O3' C B 8 -3.634 -9.401 24.422 1.00 42.49 O
ATOM 2 P C B 9 -3.530 -8.959 25.961 1.00 46.40 P
ATOM 3 OP1 C B 9 -3.849 -10.172 26.757 1.00 34.62 O
ATOM 4 OP2 C B 9 -4.295 -7.710 26.195 1.00 42.47 O
ATOM 5 O5' C B 9 -1.986 -8.583 26.162 1.00 41.37 O
ATOM 6 C5' C B 9 -0.955 -9.534 25.898 1.00 43.36 C
ATOM 7 C4' C B 9 0.404 -8.851 25.849 1.00 34.08 C
ATOM 8 O4' C B 9 0.478 -7.957 24.716 1.00 34.31 O
ATOM 9 C3' C B 9 0.819 -7.993 27.034 1.00 29.19 C
ATOM 10 O3' C B 9 1.312 -8.801 28.112 1.00 34.56 O
ATOM 11 C2' C B 9 1.930 -7.156 26.415 1.00 38.40 C
ATOM 12 O2' C B 9 3.141 -7.862 26.260 1.00 37.88 O
ATOM 13 C1' C B 9 1.336 -6.866 25.040 1.00 43.26 C
ATOM 14 N1 C B 9 0.582 -5.593 25.047 1.00 43.17 N
ATOM 15 C2 C B 9 1.315 -4.402 24.978 1.00 46.70 C
ATOM 16 O2 C B 9 2.543 -4.468 24.877 1.00 41.17 O
ATOM 17 N3 C B 9 0.670 -3.214 25.022 1.00 44.64 N
ATOM 18 C4 C B 9 -0.659 -3.183 25.123 1.00 47.98 C
ATOM 19 N4 C B 9 -1.250 -1.985 25.176 1.00 40.15 N
ATOM 20 C5 C B 9 -1.440 -4.378 25.177 1.00 45.55 C
ATOM 21 C6 C B 9 -0.783 -5.554 25.136 1.00 49.94 C
ATOM 22 P C B 10 1.265 -8.254 29.622 1.00 37.01 P
ATOM 23 OP1 C B 10 1.682 -9.370 30.483 1.00 35.75 O
ATOM 24 OP2 C B 10 0.007 -7.531 29.918 1.00 38.74 O
ATOM 25 O5' C B 10 2.439 -7.165 29.688 1.00 35.57 O
TER
Atoms:
C2: (-1.158,-5.518,21.546)
OP1: (-8.464,-7.737,23.348)
OP2: (-7.601,-5.318,23.368)
C4: (-2.131,-3.447,21.960)
O5': (-6.128,-7.226,22.709)
C3': (-3.575,-8.419,23.406)
C1': (-2.482,-7.599,21.516)
O4': (-3.789,-7.999,21.120)
C5': (-5.869,-8.543,22.230)
P: (-7.622,-6.677,22.757)
O2: (-0.177,-6.227,21.283)
C4': (-4.383,-8.805,22.175)
C2': (-2.180,-8.330,22.819)
O2': (-1.652,-9.603,22.518)
N1: (-2.417,-6.127,21.669)
N3: (-1.045,-4.183,21.706)
N4: (-1.970,-2.123,22.082)
C6: (-3.523,-5.369,21.934)
C5: (-3.427,-4.034,22.089)
O3': (-3.634,-9.401,24.422)
OP1: (-8.464,-7.737,23.348)
OP2: (-7.601,-5.318,23.368)
C4: (-2.131,-3.447,21.960)
O5': (-6.128,-7.226,22.709)
C3': (-3.575,-8.419,23.406)
C1': (-2.482,-7.599,21.516)
O4': (-3.789,-7.999,21.120)
C5': (-5.869,-8.543,22.230)
P: (-7.622,-6.677,22.757)
O2: (-0.177,-6.227,21.283)
C4': (-4.383,-8.805,22.175)
C2': (-2.180,-8.330,22.819)
O2': (-1.652,-9.603,22.518)
N1: (-2.417,-6.127,21.669)
N3: (-1.045,-4.183,21.706)
N4: (-1.970,-2.123,22.082)
C6: (-3.523,-5.369,21.934)
C5: (-3.427,-4.034,22.089)
O3': (-3.634,-9.401,24.422)
C2: (1.315,-4.402,24.978)
OP1: (-3.849,-10.172,26.757)
OP2: (-4.295,-7.710,26.195)
C4: (-0.659,-3.183,25.123)
O5': (-1.986,-8.583,26.162)
C3': (0.819,-7.993,27.034)
C1': (1.336,-6.866,25.040)
O4': (0.478,-7.957,24.716)
C5': (-0.955,-9.534,25.898)
P: (-3.530,-8.959,25.961)
O2: (2.543,-4.468,24.877)
C4': (0.404,-8.851,25.849)
C2': (1.930,-7.156,26.415)
O2': (3.141,-7.862,26.260)
N1: (0.582,-5.593,25.047)
N3: (0.670,-3.214,25.022)
N4: (-1.250,-1.985,25.176)
C6: (-0.783,-5.554,25.136)
C5: (-1.440,-4.378,25.177)
O3': (1.312,-8.801,28.112)
OP1: (-3.849,-10.172,26.757)
OP2: (-4.295,-7.710,26.195)
C4: (-0.659,-3.183,25.123)
O5': (-1.986,-8.583,26.162)
C3': (0.819,-7.993,27.034)
C1': (1.336,-6.866,25.040)
O4': (0.478,-7.957,24.716)
C5': (-0.955,-9.534,25.898)
P: (-3.530,-8.959,25.961)
O2: (2.543,-4.468,24.877)
C4': (0.404,-8.851,25.849)
C2': (1.930,-7.156,26.415)
O2': (3.141,-7.862,26.260)
N1: (0.582,-5.593,25.047)
N3: (0.670,-3.214,25.022)
N4: (-1.250,-1.985,25.176)
C6: (-0.783,-5.554,25.136)
C5: (-1.440,-4.378,25.177)
O3': (1.312,-8.801,28.112)
Image (generated by PyMOL):