Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A38:A39
Extra
PDB:
ATOM 1 O3' A A 37 1.279 2.990 19.588 1.00116.32 O
ATOM 2 P C A 38 2.425 3.439 18.574 1.00117.75 P
ATOM 3 OP1 C A 38 1.996 3.013 17.227 1.00118.28 O
ATOM 4 OP2 C A 38 3.743 3.016 19.090 1.00116.88 O
ATOM 5 O5' C A 38 2.372 5.033 18.647 1.00117.61 O
ATOM 6 C5' C A 38 1.289 5.699 18.040 1.00117.51 C
ATOM 7 C4' C A 38 1.124 7.089 18.611 1.00118.07 C
ATOM 8 O4' C A 38 0.935 7.035 20.049 1.00118.48 O
ATOM 9 C3' C A 38 2.321 8.008 18.479 1.00119.05 C
ATOM 10 O3' C A 38 2.483 8.493 17.150 1.00119.54 O
ATOM 11 C2' C A 38 1.895 9.079 19.479 1.00119.29 C
ATOM 12 O2' C A 38 0.791 9.859 19.067 1.00119.73 O
ATOM 13 C1' C A 38 1.496 8.192 20.645 1.00118.85 C
ATOM 14 N1 C A 38 2.673 7.851 21.508 1.00118.74 N
ATOM 15 C2 C A 38 3.165 8.808 22.414 1.00118.88 C
ATOM 16 O2 C A 38 2.622 9.918 22.505 1.00119.11 O
ATOM 17 N3 C A 38 4.238 8.495 23.186 1.00118.56 N
ATOM 18 C4 C A 38 4.815 7.298 23.077 1.00118.24 C
ATOM 19 N4 C A 38 5.864 7.048 23.860 1.00117.98 N
ATOM 20 C5 C A 38 4.342 6.311 22.164 1.00118.77 C
ATOM 21 C6 C A 38 3.284 6.629 21.408 1.00118.89 C
ATOM 22 P C A 39 3.909 9.028 16.668 1.00120.04 P
ATOM 23 OP1 C A 39 3.746 9.600 15.317 1.00121.32 O
ATOM 24 OP2 C A 39 4.870 7.927 16.905 1.00120.45 O
ATOM 25 O5' C A 39 4.255 10.217 17.682 1.00122.00 O
TER
ATOM 1 O3' C B 38 2.483 8.493 17.150 1.00119.54 O
ATOM 2 P C B 39 3.909 9.028 16.668 1.00120.04 P
ATOM 3 OP1 C B 39 3.746 9.600 15.317 1.00121.32 O
ATOM 4 OP2 C B 39 4.870 7.927 16.905 1.00120.45 O
ATOM 5 O5' C B 39 4.255 10.217 17.682 1.00122.00 O
ATOM 6 C5' C B 39 4.187 11.590 17.286 1.00122.91 C
ATOM 7 C4' C B 39 5.149 12.422 18.104 1.00123.70 C
ATOM 8 O4' C B 39 5.040 12.033 19.498 1.00124.43 O
ATOM 9 C3' C B 39 6.603 12.172 17.768 1.00124.24 C
ATOM 10 O3' C B 39 7.072 12.889 16.640 1.00124.43 O
ATOM 11 C2' C B 39 7.284 12.641 19.046 1.00125.13 C
ATOM 12 O2' C B 39 7.527 14.034 19.081 1.00125.54 O
ATOM 13 C1' C B 39 6.294 12.218 20.128 1.00125.62 C
ATOM 14 N1 C B 39 6.831 10.975 20.786 1.00126.57 N
ATOM 15 C2 C B 39 7.725 11.102 21.875 1.00127.24 C
ATOM 16 O2 C B 39 8.034 12.222 22.315 1.00127.33 O
ATOM 17 N3 C B 39 8.229 9.976 22.446 1.00127.10 N
ATOM 18 C4 C B 39 7.888 8.778 21.976 1.00126.74 C
ATOM 19 N4 C B 39 8.419 7.718 22.584 1.00126.82 N
ATOM 20 C5 C B 39 7.004 8.620 20.863 1.00126.74 C
ATOM 21 C6 C B 39 6.509 9.732 20.301 1.00126.63 C
ATOM 22 P C B 40 8.442 12.398 15.958 1.00126.20 P
ATOM 23 OP1 C B 40 8.650 13.122 14.686 1.00126.55 O
ATOM 24 OP2 C B 40 8.396 10.923 15.923 1.00126.64 O
ATOM 25 O5' C B 40 9.593 12.841 16.978 1.00126.75 O
TER
ATOM 2 P C A 38 2.425 3.439 18.574 1.00117.75 P
ATOM 3 OP1 C A 38 1.996 3.013 17.227 1.00118.28 O
ATOM 4 OP2 C A 38 3.743 3.016 19.090 1.00116.88 O
ATOM 5 O5' C A 38 2.372 5.033 18.647 1.00117.61 O
ATOM 6 C5' C A 38 1.289 5.699 18.040 1.00117.51 C
ATOM 7 C4' C A 38 1.124 7.089 18.611 1.00118.07 C
ATOM 8 O4' C A 38 0.935 7.035 20.049 1.00118.48 O
ATOM 9 C3' C A 38 2.321 8.008 18.479 1.00119.05 C
ATOM 10 O3' C A 38 2.483 8.493 17.150 1.00119.54 O
ATOM 11 C2' C A 38 1.895 9.079 19.479 1.00119.29 C
ATOM 12 O2' C A 38 0.791 9.859 19.067 1.00119.73 O
ATOM 13 C1' C A 38 1.496 8.192 20.645 1.00118.85 C
ATOM 14 N1 C A 38 2.673 7.851 21.508 1.00118.74 N
ATOM 15 C2 C A 38 3.165 8.808 22.414 1.00118.88 C
ATOM 16 O2 C A 38 2.622 9.918 22.505 1.00119.11 O
ATOM 17 N3 C A 38 4.238 8.495 23.186 1.00118.56 N
ATOM 18 C4 C A 38 4.815 7.298 23.077 1.00118.24 C
ATOM 19 N4 C A 38 5.864 7.048 23.860 1.00117.98 N
ATOM 20 C5 C A 38 4.342 6.311 22.164 1.00118.77 C
ATOM 21 C6 C A 38 3.284 6.629 21.408 1.00118.89 C
ATOM 22 P C A 39 3.909 9.028 16.668 1.00120.04 P
ATOM 23 OP1 C A 39 3.746 9.600 15.317 1.00121.32 O
ATOM 24 OP2 C A 39 4.870 7.927 16.905 1.00120.45 O
ATOM 25 O5' C A 39 4.255 10.217 17.682 1.00122.00 O
TER
ATOM 1 O3' C B 38 2.483 8.493 17.150 1.00119.54 O
ATOM 2 P C B 39 3.909 9.028 16.668 1.00120.04 P
ATOM 3 OP1 C B 39 3.746 9.600 15.317 1.00121.32 O
ATOM 4 OP2 C B 39 4.870 7.927 16.905 1.00120.45 O
ATOM 5 O5' C B 39 4.255 10.217 17.682 1.00122.00 O
ATOM 6 C5' C B 39 4.187 11.590 17.286 1.00122.91 C
ATOM 7 C4' C B 39 5.149 12.422 18.104 1.00123.70 C
ATOM 8 O4' C B 39 5.040 12.033 19.498 1.00124.43 O
ATOM 9 C3' C B 39 6.603 12.172 17.768 1.00124.24 C
ATOM 10 O3' C B 39 7.072 12.889 16.640 1.00124.43 O
ATOM 11 C2' C B 39 7.284 12.641 19.046 1.00125.13 C
ATOM 12 O2' C B 39 7.527 14.034 19.081 1.00125.54 O
ATOM 13 C1' C B 39 6.294 12.218 20.128 1.00125.62 C
ATOM 14 N1 C B 39 6.831 10.975 20.786 1.00126.57 N
ATOM 15 C2 C B 39 7.725 11.102 21.875 1.00127.24 C
ATOM 16 O2 C B 39 8.034 12.222 22.315 1.00127.33 O
ATOM 17 N3 C B 39 8.229 9.976 22.446 1.00127.10 N
ATOM 18 C4 C B 39 7.888 8.778 21.976 1.00126.74 C
ATOM 19 N4 C B 39 8.419 7.718 22.584 1.00126.82 N
ATOM 20 C5 C B 39 7.004 8.620 20.863 1.00126.74 C
ATOM 21 C6 C B 39 6.509 9.732 20.301 1.00126.63 C
ATOM 22 P C B 40 8.442 12.398 15.958 1.00126.20 P
ATOM 23 OP1 C B 40 8.650 13.122 14.686 1.00126.55 O
ATOM 24 OP2 C B 40 8.396 10.923 15.923 1.00126.64 O
ATOM 25 O5' C B 40 9.593 12.841 16.978 1.00126.75 O
TER
Atoms:
C2: (3.165,8.808,22.414)
OP1: (1.996,3.013,17.227)
OP2: (3.743,3.016,19.090)
C4: (4.815,7.298,23.077)
O5': (2.372,5.033,18.647)
C3': (2.321,8.008,18.479)
C1': (1.496,8.192,20.645)
O4': (0.935,7.035,20.049)
C5': (1.289,5.699,18.040)
P: (2.425,3.439,18.574)
O2: (2.622,9.918,22.505)
C4': (1.124,7.089,18.611)
C2': (1.895,9.079,19.479)
O2': (0.791,9.859,19.067)
N1: (2.673,7.851,21.508)
N3: (4.238,8.495,23.186)
N4: (5.864,7.048,23.860)
C6: (3.284,6.629,21.408)
C5: (4.342,6.311,22.164)
O3': (2.483,8.493,17.150)
OP1: (1.996,3.013,17.227)
OP2: (3.743,3.016,19.090)
C4: (4.815,7.298,23.077)
O5': (2.372,5.033,18.647)
C3': (2.321,8.008,18.479)
C1': (1.496,8.192,20.645)
O4': (0.935,7.035,20.049)
C5': (1.289,5.699,18.040)
P: (2.425,3.439,18.574)
O2: (2.622,9.918,22.505)
C4': (1.124,7.089,18.611)
C2': (1.895,9.079,19.479)
O2': (0.791,9.859,19.067)
N1: (2.673,7.851,21.508)
N3: (4.238,8.495,23.186)
N4: (5.864,7.048,23.860)
C6: (3.284,6.629,21.408)
C5: (4.342,6.311,22.164)
O3': (2.483,8.493,17.150)
C2: (7.725,11.102,21.875)
OP1: (3.746,9.600,15.317)
OP2: (4.870,7.927,16.905)
C4: (7.888,8.778,21.976)
O5': (4.255,10.217,17.682)
C3': (6.603,12.172,17.768)
C1': (6.294,12.218,20.128)
O4': (5.040,12.033,19.498)
C5': (4.187,11.590,17.286)
P: (3.909,9.028,16.668)
O2: (8.034,12.222,22.315)
C4': (5.149,12.422,18.104)
C2': (7.284,12.641,19.046)
O2': (7.527,14.034,19.081)
N1: (6.831,10.975,20.786)
N3: (8.229,9.976,22.446)
N4: (8.419,7.718,22.584)
C6: (6.509,9.732,20.301)
C5: (7.004,8.620,20.863)
O3': (7.072,12.889,16.640)
OP1: (3.746,9.600,15.317)
OP2: (4.870,7.927,16.905)
C4: (7.888,8.778,21.976)
O5': (4.255,10.217,17.682)
C3': (6.603,12.172,17.768)
C1': (6.294,12.218,20.128)
O4': (5.040,12.033,19.498)
C5': (4.187,11.590,17.286)
P: (3.909,9.028,16.668)
O2: (8.034,12.222,22.315)
C4': (5.149,12.422,18.104)
C2': (7.284,12.641,19.046)
O2': (7.527,14.034,19.081)
N1: (6.831,10.975,20.786)
N3: (8.229,9.976,22.446)
N4: (8.419,7.718,22.584)
C6: (6.509,9.732,20.301)
C5: (7.004,8.620,20.863)
O3': (7.072,12.889,16.640)
Image (generated by PyMOL):