Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1Y39:D1:D2
Extra
PDB:
ATOM 1 P C A 1 121.590 76.772 -18.945 1.00 67.19 P
ATOM 2 OP1 C A 1 121.711 75.383 -19.431 1.00 66.88 O
ATOM 3 OP2 C A 1 121.196 76.773 -17.516 1.00 67.78 O
ATOM 4 O5' C A 1 122.970 77.582 -19.142 1.00 65.05 O
ATOM 5 C5' C A 1 123.517 77.771 -20.478 1.00 78.19 C
ATOM 6 C4' C A 1 124.593 78.823 -20.572 1.00 78.29 C
ATOM 7 O4' C A 1 123.996 80.172 -20.459 1.00 78.18 O
ATOM 8 C3' C A 1 125.675 78.842 -19.538 1.00 78.20 C
ATOM 9 O3' C A 1 126.674 77.840 -19.773 1.00 79.53 O
ATOM 10 C2' C A 1 126.214 80.261 -19.636 1.00 78.18 C
ATOM 11 O2' C A 1 127.141 80.441 -20.695 1.00 77.98 O
ATOM 12 C1' C A 1 124.916 81.045 -19.818 1.00 77.82 C
ATOM 13 N1 C A 1 124.339 81.494 -18.497 1.00 77.79 N
ATOM 14 C2 C A 1 124.922 82.542 -17.842 1.00 77.64 C
ATOM 15 O2 C A 1 125.916 83.103 -18.333 1.00 77.61 O
ATOM 16 N3 C A 1 124.387 82.941 -16.663 1.00 76.93 N
ATOM 17 C4 C A 1 123.322 82.306 -16.166 1.00 76.68 C
ATOM 18 N4 C A 1 122.845 82.775 -15.010 1.00 76.56 N
ATOM 19 C5 C A 1 122.723 81.199 -16.835 1.00 76.71 C
ATOM 20 C6 C A 1 123.256 80.847 -18.001 1.00 77.31 C
ATOM 21 P C A 2 127.397 77.126 -18.574 1.00 80.77 P
ATOM 22 OP1 C A 2 128.158 75.955 -19.056 1.00 80.82 O
ATOM 23 OP2 C A 2 126.433 76.697 -17.543 1.00 80.62 O
ATOM 24 O5' C A 2 128.354 78.263 -17.987 1.00 79.00 O
TER
ATOM 1 O3' C B 1 126.674 77.840 -19.773 1.00 79.53 O
ATOM 2 P C B 2 127.397 77.126 -18.574 1.00 80.77 P
ATOM 3 OP1 C B 2 128.158 75.955 -19.056 1.00 80.82 O
ATOM 4 OP2 C B 2 126.433 76.697 -17.543 1.00 80.62 O
ATOM 5 O5' C B 2 128.354 78.263 -17.987 1.00 79.00 O
ATOM 6 C5' C B 2 129.464 78.715 -18.776 1.00 79.05 C
ATOM 7 C4' C B 2 130.202 79.817 -18.055 1.00 79.11 C
ATOM 8 O4' C B 2 129.352 80.990 -17.927 1.00 79.90 O
ATOM 9 C3' C B 2 130.650 79.552 -16.627 1.00 78.37 C
ATOM 10 O3' C B 2 131.791 78.733 -16.534 1.00 76.82 O
ATOM 11 C2' C B 2 130.836 80.923 -16.079 1.00 79.10 C
ATOM 12 O2' C B 2 132.090 81.469 -16.435 1.00 78.85 O
ATOM 13 C1' C B 2 129.652 81.662 -16.708 1.00 79.72 C
ATOM 14 N1 C B 2 128.467 81.627 -15.805 1.00 79.84 N
ATOM 15 C2 C B 2 128.286 82.593 -14.876 1.00 79.82 C
ATOM 16 O2 C B 2 129.112 83.515 -14.811 1.00 79.58 O
ATOM 17 N3 C B 2 127.217 82.528 -14.044 1.00 80.13 N
ATOM 18 C4 C B 2 126.348 81.518 -14.151 1.00 80.20 C
ATOM 19 N4 C B 2 125.315 81.520 -13.305 1.00 80.03 N
ATOM 20 C5 C B 2 126.502 80.492 -15.130 1.00 79.72 C
ATOM 21 C6 C B 2 127.564 80.602 -15.915 1.00 80.13 C
ATOM 22 P A B 3 132.021 77.768 -15.303 1.00 77.23 P
ATOM 23 OP1 A B 3 133.311 77.062 -15.502 1.00 77.80 O
ATOM 24 OP2 A B 3 130.775 76.974 -15.095 1.00 76.39 O
ATOM 25 O5' A B 3 132.209 78.793 -14.099 1.00 74.91 O
TER
ATOM 2 OP1 C A 1 121.711 75.383 -19.431 1.00 66.88 O
ATOM 3 OP2 C A 1 121.196 76.773 -17.516 1.00 67.78 O
ATOM 4 O5' C A 1 122.970 77.582 -19.142 1.00 65.05 O
ATOM 5 C5' C A 1 123.517 77.771 -20.478 1.00 78.19 C
ATOM 6 C4' C A 1 124.593 78.823 -20.572 1.00 78.29 C
ATOM 7 O4' C A 1 123.996 80.172 -20.459 1.00 78.18 O
ATOM 8 C3' C A 1 125.675 78.842 -19.538 1.00 78.20 C
ATOM 9 O3' C A 1 126.674 77.840 -19.773 1.00 79.53 O
ATOM 10 C2' C A 1 126.214 80.261 -19.636 1.00 78.18 C
ATOM 11 O2' C A 1 127.141 80.441 -20.695 1.00 77.98 O
ATOM 12 C1' C A 1 124.916 81.045 -19.818 1.00 77.82 C
ATOM 13 N1 C A 1 124.339 81.494 -18.497 1.00 77.79 N
ATOM 14 C2 C A 1 124.922 82.542 -17.842 1.00 77.64 C
ATOM 15 O2 C A 1 125.916 83.103 -18.333 1.00 77.61 O
ATOM 16 N3 C A 1 124.387 82.941 -16.663 1.00 76.93 N
ATOM 17 C4 C A 1 123.322 82.306 -16.166 1.00 76.68 C
ATOM 18 N4 C A 1 122.845 82.775 -15.010 1.00 76.56 N
ATOM 19 C5 C A 1 122.723 81.199 -16.835 1.00 76.71 C
ATOM 20 C6 C A 1 123.256 80.847 -18.001 1.00 77.31 C
ATOM 21 P C A 2 127.397 77.126 -18.574 1.00 80.77 P
ATOM 22 OP1 C A 2 128.158 75.955 -19.056 1.00 80.82 O
ATOM 23 OP2 C A 2 126.433 76.697 -17.543 1.00 80.62 O
ATOM 24 O5' C A 2 128.354 78.263 -17.987 1.00 79.00 O
TER
ATOM 1 O3' C B 1 126.674 77.840 -19.773 1.00 79.53 O
ATOM 2 P C B 2 127.397 77.126 -18.574 1.00 80.77 P
ATOM 3 OP1 C B 2 128.158 75.955 -19.056 1.00 80.82 O
ATOM 4 OP2 C B 2 126.433 76.697 -17.543 1.00 80.62 O
ATOM 5 O5' C B 2 128.354 78.263 -17.987 1.00 79.00 O
ATOM 6 C5' C B 2 129.464 78.715 -18.776 1.00 79.05 C
ATOM 7 C4' C B 2 130.202 79.817 -18.055 1.00 79.11 C
ATOM 8 O4' C B 2 129.352 80.990 -17.927 1.00 79.90 O
ATOM 9 C3' C B 2 130.650 79.552 -16.627 1.00 78.37 C
ATOM 10 O3' C B 2 131.791 78.733 -16.534 1.00 76.82 O
ATOM 11 C2' C B 2 130.836 80.923 -16.079 1.00 79.10 C
ATOM 12 O2' C B 2 132.090 81.469 -16.435 1.00 78.85 O
ATOM 13 C1' C B 2 129.652 81.662 -16.708 1.00 79.72 C
ATOM 14 N1 C B 2 128.467 81.627 -15.805 1.00 79.84 N
ATOM 15 C2 C B 2 128.286 82.593 -14.876 1.00 79.82 C
ATOM 16 O2 C B 2 129.112 83.515 -14.811 1.00 79.58 O
ATOM 17 N3 C B 2 127.217 82.528 -14.044 1.00 80.13 N
ATOM 18 C4 C B 2 126.348 81.518 -14.151 1.00 80.20 C
ATOM 19 N4 C B 2 125.315 81.520 -13.305 1.00 80.03 N
ATOM 20 C5 C B 2 126.502 80.492 -15.130 1.00 79.72 C
ATOM 21 C6 C B 2 127.564 80.602 -15.915 1.00 80.13 C
ATOM 22 P A B 3 132.021 77.768 -15.303 1.00 77.23 P
ATOM 23 OP1 A B 3 133.311 77.062 -15.502 1.00 77.80 O
ATOM 24 OP2 A B 3 130.775 76.974 -15.095 1.00 76.39 O
ATOM 25 O5' A B 3 132.209 78.793 -14.099 1.00 74.91 O
TER
Atoms:
C2: (124.922,82.542,-17.842)
OP1: (121.711,75.383,-19.431)
OP2: (121.196,76.773,-17.516)
C4: (123.322,82.306,-16.166)
O5': (122.970,77.582,-19.142)
C3': (125.675,78.842,-19.538)
C1': (124.916,81.045,-19.818)
O4': (123.996,80.172,-20.459)
C5': (123.517,77.771,-20.478)
P: (121.590,76.772,-18.945)
O2: (125.916,83.103,-18.333)
C4': (124.593,78.823,-20.572)
C2': (126.214,80.261,-19.636)
O2': (127.141,80.441,-20.695)
N1: (124.339,81.494,-18.497)
N3: (124.387,82.941,-16.663)
N4: (122.845,82.775,-15.010)
C6: (123.256,80.847,-18.001)
C5: (122.723,81.199,-16.835)
O3': (126.674,77.840,-19.773)
OP1: (121.711,75.383,-19.431)
OP2: (121.196,76.773,-17.516)
C4: (123.322,82.306,-16.166)
O5': (122.970,77.582,-19.142)
C3': (125.675,78.842,-19.538)
C1': (124.916,81.045,-19.818)
O4': (123.996,80.172,-20.459)
C5': (123.517,77.771,-20.478)
P: (121.590,76.772,-18.945)
O2: (125.916,83.103,-18.333)
C4': (124.593,78.823,-20.572)
C2': (126.214,80.261,-19.636)
O2': (127.141,80.441,-20.695)
N1: (124.339,81.494,-18.497)
N3: (124.387,82.941,-16.663)
N4: (122.845,82.775,-15.010)
C6: (123.256,80.847,-18.001)
C5: (122.723,81.199,-16.835)
O3': (126.674,77.840,-19.773)
C2: (128.286,82.593,-14.876)
OP1: (128.158,75.955,-19.056)
OP2: (126.433,76.697,-17.543)
C4: (126.348,81.518,-14.151)
O5': (128.354,78.263,-17.987)
C3': (130.650,79.552,-16.627)
C1': (129.652,81.662,-16.708)
O4': (129.352,80.990,-17.927)
C5': (129.464,78.715,-18.776)
P: (127.397,77.126,-18.574)
O2: (129.112,83.515,-14.811)
C4': (130.202,79.817,-18.055)
C2': (130.836,80.923,-16.079)
O2': (132.090,81.469,-16.435)
N1: (128.467,81.627,-15.805)
N3: (127.217,82.528,-14.044)
N4: (125.315,81.520,-13.305)
C6: (127.564,80.602,-15.915)
C5: (126.502,80.492,-15.130)
O3': (131.791,78.733,-16.534)
OP1: (128.158,75.955,-19.056)
OP2: (126.433,76.697,-17.543)
C4: (126.348,81.518,-14.151)
O5': (128.354,78.263,-17.987)
C3': (130.650,79.552,-16.627)
C1': (129.652,81.662,-16.708)
O4': (129.352,80.990,-17.927)
C5': (129.464,78.715,-18.776)
P: (127.397,77.126,-18.574)
O2: (129.112,83.515,-14.811)
C4': (130.202,79.817,-18.055)
C2': (130.836,80.923,-16.079)
O2': (132.090,81.469,-16.435)
N1: (128.467,81.627,-15.805)
N3: (127.217,82.528,-14.044)
N4: (125.315,81.520,-13.305)
C6: (127.564,80.602,-15.915)
C5: (126.502,80.492,-15.130)
O3': (131.791,78.733,-16.534)
Image (generated by PyMOL):