Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:A4:A5
Extra
PDB:
ATOM 1 O3' A A 3 -29.007 -0.398 -27.475 1.00 44.81 O
ATOM 2 P C A 4 -28.654 1.080 -26.966 1.00 49.88 P
ATOM 3 OP1 C A 4 -29.054 2.031 -28.027 1.00 53.93 O
ATOM 4 OP2 C A 4 -27.263 1.082 -26.463 1.00 48.09 O
ATOM 5 O5' C A 4 -29.654 1.277 -25.734 1.00 44.80 O
ATOM 6 C5' C A 4 -31.054 1.149 -25.945 1.00 44.03 C
ATOM 7 C4' C A 4 -31.782 0.998 -24.624 1.00 43.55 C
ATOM 8 O4' C A 4 -31.346 -0.219 -23.968 1.00 42.34 O
ATOM 9 C3' C A 4 -31.492 2.088 -23.607 1.00 43.60 C
ATOM 10 O3' C A 4 -32.300 3.231 -23.848 1.00 48.27 O
ATOM 11 C2' C A 4 -31.877 1.384 -22.313 1.00 39.42 C
ATOM 12 O2' C A 4 -33.274 1.332 -22.114 1.00 42.34 O
ATOM 13 C1' C A 4 -31.330 -0.018 -22.567 1.00 42.48 C
ATOM 14 N1 C A 4 -29.940 -0.184 -22.066 1.00 42.29 N
ATOM 15 C2 C A 4 -29.738 -0.466 -20.712 1.00 43.56 C
ATOM 16 O2 C A 4 -30.726 -0.573 -19.973 1.00 41.59 O
ATOM 17 N3 C A 4 -28.470 -0.614 -20.252 1.00 42.19 N
ATOM 18 C4 C A 4 -27.439 -0.490 -21.090 1.00 40.79 C
ATOM 19 N4 C A 4 -26.207 -0.646 -20.595 1.00 40.34 N
ATOM 20 C5 C A 4 -27.626 -0.202 -22.475 1.00 44.02 C
ATOM 21 C6 C A 4 -28.880 -0.057 -22.916 1.00 44.33 C
ATOM 22 P C A 5 -31.770 4.671 -23.400 1.00 47.47 P
ATOM 23 OP1 C A 5 -32.754 5.681 -23.852 1.00 50.75 O
ATOM 24 OP2 C A 5 -30.353 4.783 -23.817 1.00 45.66 O
ATOM 25 O5' C A 5 -31.843 4.593 -21.805 1.00 44.52 O
TER
ATOM 1 O3' C B 4 -32.300 3.231 -23.848 1.00 48.27 O
ATOM 2 P C B 5 -31.770 4.671 -23.400 1.00 47.47 P
ATOM 3 OP1 C B 5 -32.754 5.681 -23.852 1.00 50.75 O
ATOM 4 OP2 C B 5 -30.353 4.783 -23.817 1.00 45.66 O
ATOM 5 O5' C B 5 -31.843 4.593 -21.805 1.00 44.52 O
ATOM 6 C5' C B 5 -33.104 4.609 -21.145 1.00 45.81 C
ATOM 7 C4' C B 5 -32.959 4.301 -19.665 1.00 42.73 C
ATOM 8 O4' C B 5 -32.299 3.021 -19.495 1.00 43.13 O
ATOM 9 C3' C B 5 -32.082 5.253 -18.865 1.00 41.22 C
ATOM 10 O3' C B 5 -32.771 6.444 -18.508 1.00 44.20 O
ATOM 11 C2' C B 5 -31.794 4.393 -17.641 1.00 42.74 C
ATOM 12 O2' C B 5 -32.897 4.306 -16.763 1.00 46.15 O
ATOM 13 C1' C B 5 -31.534 3.044 -18.301 1.00 43.21 C
ATOM 14 N1 C B 5 -30.093 2.864 -18.628 1.00 38.97 N
ATOM 15 C2 C B 5 -29.209 2.513 -17.605 1.00 40.44 C
ATOM 16 O2 C B 5 -29.652 2.351 -16.462 1.00 40.00 O
ATOM 17 N3 C B 5 -27.895 2.356 -17.899 1.00 39.13 N
ATOM 18 C4 C B 5 -27.464 2.541 -19.146 1.00 38.21 C
ATOM 19 N4 C B 5 -26.160 2.374 -19.383 1.00 39.94 N
ATOM 20 C5 C B 5 -28.349 2.905 -20.204 1.00 39.11 C
ATOM 21 C6 C B 5 -29.643 3.057 -19.901 1.00 40.80 C
ATOM 22 P A B 6 -31.923 7.791 -18.339 1.00 46.86 P
ATOM 23 OP1 A B 6 -32.857 8.891 -18.005 1.00 51.59 O
ATOM 24 OP2 A B 6 -31.041 7.914 -19.519 1.00 47.74 O
ATOM 25 O5' A B 6 -31.024 7.490 -17.048 1.00 43.13 O
TER
ATOM 2 P C A 4 -28.654 1.080 -26.966 1.00 49.88 P
ATOM 3 OP1 C A 4 -29.054 2.031 -28.027 1.00 53.93 O
ATOM 4 OP2 C A 4 -27.263 1.082 -26.463 1.00 48.09 O
ATOM 5 O5' C A 4 -29.654 1.277 -25.734 1.00 44.80 O
ATOM 6 C5' C A 4 -31.054 1.149 -25.945 1.00 44.03 C
ATOM 7 C4' C A 4 -31.782 0.998 -24.624 1.00 43.55 C
ATOM 8 O4' C A 4 -31.346 -0.219 -23.968 1.00 42.34 O
ATOM 9 C3' C A 4 -31.492 2.088 -23.607 1.00 43.60 C
ATOM 10 O3' C A 4 -32.300 3.231 -23.848 1.00 48.27 O
ATOM 11 C2' C A 4 -31.877 1.384 -22.313 1.00 39.42 C
ATOM 12 O2' C A 4 -33.274 1.332 -22.114 1.00 42.34 O
ATOM 13 C1' C A 4 -31.330 -0.018 -22.567 1.00 42.48 C
ATOM 14 N1 C A 4 -29.940 -0.184 -22.066 1.00 42.29 N
ATOM 15 C2 C A 4 -29.738 -0.466 -20.712 1.00 43.56 C
ATOM 16 O2 C A 4 -30.726 -0.573 -19.973 1.00 41.59 O
ATOM 17 N3 C A 4 -28.470 -0.614 -20.252 1.00 42.19 N
ATOM 18 C4 C A 4 -27.439 -0.490 -21.090 1.00 40.79 C
ATOM 19 N4 C A 4 -26.207 -0.646 -20.595 1.00 40.34 N
ATOM 20 C5 C A 4 -27.626 -0.202 -22.475 1.00 44.02 C
ATOM 21 C6 C A 4 -28.880 -0.057 -22.916 1.00 44.33 C
ATOM 22 P C A 5 -31.770 4.671 -23.400 1.00 47.47 P
ATOM 23 OP1 C A 5 -32.754 5.681 -23.852 1.00 50.75 O
ATOM 24 OP2 C A 5 -30.353 4.783 -23.817 1.00 45.66 O
ATOM 25 O5' C A 5 -31.843 4.593 -21.805 1.00 44.52 O
TER
ATOM 1 O3' C B 4 -32.300 3.231 -23.848 1.00 48.27 O
ATOM 2 P C B 5 -31.770 4.671 -23.400 1.00 47.47 P
ATOM 3 OP1 C B 5 -32.754 5.681 -23.852 1.00 50.75 O
ATOM 4 OP2 C B 5 -30.353 4.783 -23.817 1.00 45.66 O
ATOM 5 O5' C B 5 -31.843 4.593 -21.805 1.00 44.52 O
ATOM 6 C5' C B 5 -33.104 4.609 -21.145 1.00 45.81 C
ATOM 7 C4' C B 5 -32.959 4.301 -19.665 1.00 42.73 C
ATOM 8 O4' C B 5 -32.299 3.021 -19.495 1.00 43.13 O
ATOM 9 C3' C B 5 -32.082 5.253 -18.865 1.00 41.22 C
ATOM 10 O3' C B 5 -32.771 6.444 -18.508 1.00 44.20 O
ATOM 11 C2' C B 5 -31.794 4.393 -17.641 1.00 42.74 C
ATOM 12 O2' C B 5 -32.897 4.306 -16.763 1.00 46.15 O
ATOM 13 C1' C B 5 -31.534 3.044 -18.301 1.00 43.21 C
ATOM 14 N1 C B 5 -30.093 2.864 -18.628 1.00 38.97 N
ATOM 15 C2 C B 5 -29.209 2.513 -17.605 1.00 40.44 C
ATOM 16 O2 C B 5 -29.652 2.351 -16.462 1.00 40.00 O
ATOM 17 N3 C B 5 -27.895 2.356 -17.899 1.00 39.13 N
ATOM 18 C4 C B 5 -27.464 2.541 -19.146 1.00 38.21 C
ATOM 19 N4 C B 5 -26.160 2.374 -19.383 1.00 39.94 N
ATOM 20 C5 C B 5 -28.349 2.905 -20.204 1.00 39.11 C
ATOM 21 C6 C B 5 -29.643 3.057 -19.901 1.00 40.80 C
ATOM 22 P A B 6 -31.923 7.791 -18.339 1.00 46.86 P
ATOM 23 OP1 A B 6 -32.857 8.891 -18.005 1.00 51.59 O
ATOM 24 OP2 A B 6 -31.041 7.914 -19.519 1.00 47.74 O
ATOM 25 O5' A B 6 -31.024 7.490 -17.048 1.00 43.13 O
TER
Atoms:
C2: (-29.738,-0.466,-20.712)
OP1: (-29.054,2.031,-28.027)
OP2: (-27.263,1.082,-26.463)
C4: (-27.439,-0.490,-21.090)
O5': (-29.654,1.277,-25.734)
C3': (-31.492,2.088,-23.607)
C1': (-31.330,-0.018,-22.567)
O4': (-31.346,-0.219,-23.968)
C5': (-31.054,1.149,-25.945)
P: (-28.654,1.080,-26.966)
O2: (-30.726,-0.573,-19.973)
C4': (-31.782,0.998,-24.624)
C2': (-31.877,1.384,-22.313)
O2': (-33.274,1.332,-22.114)
N1: (-29.940,-0.184,-22.066)
N3: (-28.470,-0.614,-20.252)
N4: (-26.207,-0.646,-20.595)
C6: (-28.880,-0.057,-22.916)
C5: (-27.626,-0.202,-22.475)
O3': (-32.300,3.231,-23.848)
OP1: (-29.054,2.031,-28.027)
OP2: (-27.263,1.082,-26.463)
C4: (-27.439,-0.490,-21.090)
O5': (-29.654,1.277,-25.734)
C3': (-31.492,2.088,-23.607)
C1': (-31.330,-0.018,-22.567)
O4': (-31.346,-0.219,-23.968)
C5': (-31.054,1.149,-25.945)
P: (-28.654,1.080,-26.966)
O2: (-30.726,-0.573,-19.973)
C4': (-31.782,0.998,-24.624)
C2': (-31.877,1.384,-22.313)
O2': (-33.274,1.332,-22.114)
N1: (-29.940,-0.184,-22.066)
N3: (-28.470,-0.614,-20.252)
N4: (-26.207,-0.646,-20.595)
C6: (-28.880,-0.057,-22.916)
C5: (-27.626,-0.202,-22.475)
O3': (-32.300,3.231,-23.848)
C2: (-29.209,2.513,-17.605)
OP1: (-32.754,5.681,-23.852)
OP2: (-30.353,4.783,-23.817)
C4: (-27.464,2.541,-19.146)
O5': (-31.843,4.593,-21.805)
C3': (-32.082,5.253,-18.865)
C1': (-31.534,3.044,-18.301)
O4': (-32.299,3.021,-19.495)
C5': (-33.104,4.609,-21.145)
P: (-31.770,4.671,-23.400)
O2: (-29.652,2.351,-16.462)
C4': (-32.959,4.301,-19.665)
C2': (-31.794,4.393,-17.641)
O2': (-32.897,4.306,-16.763)
N1: (-30.093,2.864,-18.628)
N3: (-27.895,2.356,-17.899)
N4: (-26.160,2.374,-19.383)
C6: (-29.643,3.057,-19.901)
C5: (-28.349,2.905,-20.204)
O3': (-32.771,6.444,-18.508)
OP1: (-32.754,5.681,-23.852)
OP2: (-30.353,4.783,-23.817)
C4: (-27.464,2.541,-19.146)
O5': (-31.843,4.593,-21.805)
C3': (-32.082,5.253,-18.865)
C1': (-31.534,3.044,-18.301)
O4': (-32.299,3.021,-19.495)
C5': (-33.104,4.609,-21.145)
P: (-31.770,4.671,-23.400)
O2: (-29.652,2.351,-16.462)
C4': (-32.959,4.301,-19.665)
C2': (-31.794,4.393,-17.641)
O2': (-32.897,4.306,-16.763)
N1: (-30.093,2.864,-18.628)
N3: (-27.895,2.356,-17.899)
N4: (-26.160,2.374,-19.383)
C6: (-29.643,3.057,-19.901)
C5: (-28.349,2.905,-20.204)
O3': (-32.771,6.444,-18.508)
Image (generated by PyMOL):