Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A81:A82
Extra
PDB:
ATOM 1 O3' U A 80 9.100 -32.726 31.925 1.00 42.23 O
ATOM 2 P C A 81 8.993 -34.005 30.955 1.00 48.10 P
ATOM 3 OP1 C A 81 10.138 -34.891 31.274 1.00 47.92 O
ATOM 4 OP2 C A 81 8.853 -33.495 29.569 1.00 46.64 O
ATOM 5 O5' C A 81 7.630 -34.692 31.422 1.00 43.16 O
ATOM 6 C5' C A 81 7.514 -35.257 32.717 1.00 40.81 C
ATOM 7 C4' C A 81 6.085 -35.617 33.057 1.00 39.25 C
ATOM 8 O4' C A 81 5.242 -34.438 33.025 1.00 36.72 O
ATOM 9 C3' C A 81 5.378 -36.574 32.117 1.00 37.11 C
ATOM 10 O3' C A 81 5.787 -37.920 32.278 1.00 36.33 O
ATOM 11 C2' C A 81 3.917 -36.336 32.471 1.00 36.84 C
ATOM 12 O2' C A 81 3.582 -36.993 33.684 1.00 38.67 O
ATOM 13 C1' C A 81 3.913 -34.825 32.727 1.00 37.51 C
ATOM 14 N1 C A 81 3.436 -34.072 31.550 1.00 35.92 N
ATOM 15 C2 C A 81 2.054 -33.891 31.436 1.00 35.79 C
ATOM 16 O2 C A 81 1.317 -34.343 32.328 1.00 31.69 O
ATOM 17 N3 C A 81 1.555 -33.227 30.368 1.00 36.74 N
ATOM 18 C4 C A 81 2.387 -32.759 29.439 1.00 37.14 C
ATOM 19 N4 C A 81 1.852 -32.109 28.404 1.00 36.39 N
ATOM 20 C5 C A 81 3.799 -32.938 29.526 1.00 38.18 C
ATOM 21 C6 C A 81 4.281 -33.598 30.588 1.00 35.92 C
ATOM 22 P C A 82 5.732 -38.933 31.032 1.00 36.04 P
ATOM 23 OP1 C A 82 6.430 -40.173 31.450 1.00 42.88 O
ATOM 24 OP2 C A 82 6.237 -38.196 29.847 1.00 36.94 O
ATOM 25 O5' C A 82 4.172 -39.218 30.872 1.00 34.93 O
TER
ATOM 1 O3' C B 81 5.787 -37.920 32.278 1.00 36.33 O
ATOM 2 P C B 82 5.732 -38.933 31.032 1.00 36.04 P
ATOM 3 OP1 C B 82 6.430 -40.173 31.450 1.00 42.88 O
ATOM 4 OP2 C B 82 6.237 -38.196 29.847 1.00 36.94 O
ATOM 5 O5' C B 82 4.172 -39.218 30.872 1.00 34.93 O
ATOM 6 C5' C B 82 3.503 -40.098 31.760 1.00 33.88 C
ATOM 7 C4' C B 82 2.003 -40.004 31.625 1.00 34.10 C
ATOM 8 O4' C B 82 1.576 -38.616 31.698 1.00 34.55 O
ATOM 9 C3' C B 82 1.410 -40.482 30.314 1.00 35.57 C
ATOM 10 O3' C B 82 1.344 -41.892 30.204 1.00 41.81 O
ATOM 11 C2' C B 82 0.049 -39.805 30.326 1.00 36.24 C
ATOM 12 O2' C B 82 -0.824 -40.451 31.240 1.00 35.88 O
ATOM 13 C1' C B 82 0.418 -38.438 30.899 1.00 34.78 C
ATOM 14 N1 C B 82 0.724 -37.473 29.824 1.00 35.69 N
ATOM 15 C2 C B 82 -0.353 -36.913 29.128 1.00 36.21 C
ATOM 16 O2 C B 82 -1.507 -37.228 29.458 1.00 34.07 O
ATOM 17 N3 C B 82 -0.113 -36.042 28.120 1.00 36.15 N
ATOM 18 C4 C B 82 1.144 -35.733 27.796 1.00 38.32 C
ATOM 19 N4 C B 82 1.338 -34.867 26.797 1.00 38.04 N
ATOM 20 C5 C B 82 2.260 -36.298 28.483 1.00 38.53 C
ATOM 21 C6 C B 82 2.008 -37.160 29.478 1.00 36.94 C
ATOM 22 P G B 83 1.462 -42.590 28.760 1.00 40.95 P
ATOM 23 OP1 G B 83 1.342 -44.053 28.972 1.00 44.21 O
ATOM 24 OP2 G B 83 2.691 -42.061 28.120 1.00 37.74 O
ATOM 25 O5' G B 83 0.175 -42.047 27.996 1.00 37.99 O
TER
ATOM 2 P C A 81 8.993 -34.005 30.955 1.00 48.10 P
ATOM 3 OP1 C A 81 10.138 -34.891 31.274 1.00 47.92 O
ATOM 4 OP2 C A 81 8.853 -33.495 29.569 1.00 46.64 O
ATOM 5 O5' C A 81 7.630 -34.692 31.422 1.00 43.16 O
ATOM 6 C5' C A 81 7.514 -35.257 32.717 1.00 40.81 C
ATOM 7 C4' C A 81 6.085 -35.617 33.057 1.00 39.25 C
ATOM 8 O4' C A 81 5.242 -34.438 33.025 1.00 36.72 O
ATOM 9 C3' C A 81 5.378 -36.574 32.117 1.00 37.11 C
ATOM 10 O3' C A 81 5.787 -37.920 32.278 1.00 36.33 O
ATOM 11 C2' C A 81 3.917 -36.336 32.471 1.00 36.84 C
ATOM 12 O2' C A 81 3.582 -36.993 33.684 1.00 38.67 O
ATOM 13 C1' C A 81 3.913 -34.825 32.727 1.00 37.51 C
ATOM 14 N1 C A 81 3.436 -34.072 31.550 1.00 35.92 N
ATOM 15 C2 C A 81 2.054 -33.891 31.436 1.00 35.79 C
ATOM 16 O2 C A 81 1.317 -34.343 32.328 1.00 31.69 O
ATOM 17 N3 C A 81 1.555 -33.227 30.368 1.00 36.74 N
ATOM 18 C4 C A 81 2.387 -32.759 29.439 1.00 37.14 C
ATOM 19 N4 C A 81 1.852 -32.109 28.404 1.00 36.39 N
ATOM 20 C5 C A 81 3.799 -32.938 29.526 1.00 38.18 C
ATOM 21 C6 C A 81 4.281 -33.598 30.588 1.00 35.92 C
ATOM 22 P C A 82 5.732 -38.933 31.032 1.00 36.04 P
ATOM 23 OP1 C A 82 6.430 -40.173 31.450 1.00 42.88 O
ATOM 24 OP2 C A 82 6.237 -38.196 29.847 1.00 36.94 O
ATOM 25 O5' C A 82 4.172 -39.218 30.872 1.00 34.93 O
TER
ATOM 1 O3' C B 81 5.787 -37.920 32.278 1.00 36.33 O
ATOM 2 P C B 82 5.732 -38.933 31.032 1.00 36.04 P
ATOM 3 OP1 C B 82 6.430 -40.173 31.450 1.00 42.88 O
ATOM 4 OP2 C B 82 6.237 -38.196 29.847 1.00 36.94 O
ATOM 5 O5' C B 82 4.172 -39.218 30.872 1.00 34.93 O
ATOM 6 C5' C B 82 3.503 -40.098 31.760 1.00 33.88 C
ATOM 7 C4' C B 82 2.003 -40.004 31.625 1.00 34.10 C
ATOM 8 O4' C B 82 1.576 -38.616 31.698 1.00 34.55 O
ATOM 9 C3' C B 82 1.410 -40.482 30.314 1.00 35.57 C
ATOM 10 O3' C B 82 1.344 -41.892 30.204 1.00 41.81 O
ATOM 11 C2' C B 82 0.049 -39.805 30.326 1.00 36.24 C
ATOM 12 O2' C B 82 -0.824 -40.451 31.240 1.00 35.88 O
ATOM 13 C1' C B 82 0.418 -38.438 30.899 1.00 34.78 C
ATOM 14 N1 C B 82 0.724 -37.473 29.824 1.00 35.69 N
ATOM 15 C2 C B 82 -0.353 -36.913 29.128 1.00 36.21 C
ATOM 16 O2 C B 82 -1.507 -37.228 29.458 1.00 34.07 O
ATOM 17 N3 C B 82 -0.113 -36.042 28.120 1.00 36.15 N
ATOM 18 C4 C B 82 1.144 -35.733 27.796 1.00 38.32 C
ATOM 19 N4 C B 82 1.338 -34.867 26.797 1.00 38.04 N
ATOM 20 C5 C B 82 2.260 -36.298 28.483 1.00 38.53 C
ATOM 21 C6 C B 82 2.008 -37.160 29.478 1.00 36.94 C
ATOM 22 P G B 83 1.462 -42.590 28.760 1.00 40.95 P
ATOM 23 OP1 G B 83 1.342 -44.053 28.972 1.00 44.21 O
ATOM 24 OP2 G B 83 2.691 -42.061 28.120 1.00 37.74 O
ATOM 25 O5' G B 83 0.175 -42.047 27.996 1.00 37.99 O
TER
Atoms:
C2: (2.054,-33.891,31.436)
OP1: (10.138,-34.891,31.274)
OP2: (8.853,-33.495,29.569)
C4: (2.387,-32.759,29.439)
O5': (7.630,-34.692,31.422)
C3': (5.378,-36.574,32.117)
C1': (3.913,-34.825,32.727)
O4': (5.242,-34.438,33.025)
C5': (7.514,-35.257,32.717)
P: (8.993,-34.005,30.955)
O2: (1.317,-34.343,32.328)
C4': (6.085,-35.617,33.057)
C2': (3.917,-36.336,32.471)
O2': (3.582,-36.993,33.684)
N1: (3.436,-34.072,31.550)
N3: (1.555,-33.227,30.368)
N4: (1.852,-32.109,28.404)
C6: (4.281,-33.598,30.588)
C5: (3.799,-32.938,29.526)
O3': (5.787,-37.920,32.278)
OP1: (10.138,-34.891,31.274)
OP2: (8.853,-33.495,29.569)
C4: (2.387,-32.759,29.439)
O5': (7.630,-34.692,31.422)
C3': (5.378,-36.574,32.117)
C1': (3.913,-34.825,32.727)
O4': (5.242,-34.438,33.025)
C5': (7.514,-35.257,32.717)
P: (8.993,-34.005,30.955)
O2: (1.317,-34.343,32.328)
C4': (6.085,-35.617,33.057)
C2': (3.917,-36.336,32.471)
O2': (3.582,-36.993,33.684)
N1: (3.436,-34.072,31.550)
N3: (1.555,-33.227,30.368)
N4: (1.852,-32.109,28.404)
C6: (4.281,-33.598,30.588)
C5: (3.799,-32.938,29.526)
O3': (5.787,-37.920,32.278)
C2: (-0.353,-36.913,29.128)
OP1: (6.430,-40.173,31.450)
OP2: (6.237,-38.196,29.847)
C4: (1.144,-35.733,27.796)
O5': (4.172,-39.218,30.872)
C3': (1.410,-40.482,30.314)
C1': (0.418,-38.438,30.899)
O4': (1.576,-38.616,31.698)
C5': (3.503,-40.098,31.760)
P: (5.732,-38.933,31.032)
O2: (-1.507,-37.228,29.458)
C4': (2.003,-40.004,31.625)
C2': (0.049,-39.805,30.326)
O2': (-0.824,-40.451,31.240)
N1: (0.724,-37.473,29.824)
N3: (-0.113,-36.042,28.120)
N4: (1.338,-34.867,26.797)
C6: (2.008,-37.160,29.478)
C5: (2.260,-36.298,28.483)
O3': (1.344,-41.892,30.204)
OP1: (6.430,-40.173,31.450)
OP2: (6.237,-38.196,29.847)
C4: (1.144,-35.733,27.796)
O5': (4.172,-39.218,30.872)
C3': (1.410,-40.482,30.314)
C1': (0.418,-38.438,30.899)
O4': (1.576,-38.616,31.698)
C5': (3.503,-40.098,31.760)
P: (5.732,-38.933,31.032)
O2: (-1.507,-37.228,29.458)
C4': (2.003,-40.004,31.625)
C2': (0.049,-39.805,30.326)
O2': (-0.824,-40.451,31.240)
N1: (0.724,-37.473,29.824)
N3: (-0.113,-36.042,28.120)
N4: (1.338,-34.867,26.797)
C6: (2.008,-37.160,29.478)
C5: (2.260,-36.298,28.483)
O3': (1.344,-41.892,30.204)
Image (generated by PyMOL):