Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B3:B4
Extra
PDB:
ATOM 1 O3' G A 2 -5.956 57.337 7.786 1.00107.41 O
ATOM 2 P C A 3 -6.475 58.842 7.588 1.00108.85 P
ATOM 3 OP1 C A 3 -5.316 59.735 7.843 1.00109.01 O
ATOM 4 OP2 C A 3 -7.718 59.006 8.383 1.00108.60 O
ATOM 5 O5' C A 3 -6.866 58.913 6.045 1.00108.92 O
ATOM 6 C5' C A 3 -5.851 58.906 5.062 1.00110.95 C
ATOM 7 C4' C A 3 -6.432 58.919 3.669 1.00112.51 C
ATOM 8 O4' C A 3 -7.154 57.688 3.386 1.00112.00 O
ATOM 9 C3' C A 3 -7.438 59.984 3.263 1.00113.67 C
ATOM 10 O3' C A 3 -6.862 61.279 3.056 1.00116.61 O
ATOM 11 C2' C A 3 -7.966 59.394 1.950 1.00112.93 C
ATOM 12 O2' C A 3 -7.099 59.637 0.853 1.00111.76 O
ATOM 13 C1' C A 3 -7.958 57.889 2.237 1.00111.05 C
ATOM 14 N1 C A 3 -9.324 57.380 2.462 1.00109.38 N
ATOM 15 C2 C A 3 -10.027 56.832 1.364 1.00108.81 C
ATOM 16 O2 C A 3 -9.464 56.726 0.274 1.00108.27 O
ATOM 17 N3 C A 3 -11.301 56.435 1.518 1.00108.34 N
ATOM 18 C4 C A 3 -11.892 56.546 2.699 1.00108.11 C
ATOM 19 N4 C A 3 -13.165 56.149 2.768 1.00107.51 N
ATOM 20 C5 C A 3 -11.205 57.069 3.849 1.00108.24 C
ATOM 21 C6 C A 3 -9.927 57.466 3.685 1.00108.54 C
ATOM 22 P C A 4 -7.823 62.579 2.969 1.00118.55 P
ATOM 23 OP1 C A 4 -6.969 63.793 3.004 1.00118.36 O
ATOM 24 OP2 C A 4 -8.917 62.423 3.967 1.00117.95 O
ATOM 25 O5' C A 4 -8.464 62.489 1.512 1.00119.24 O
TER
ATOM 1 O3' C B 3 -6.862 61.279 3.056 1.00116.61 O
ATOM 2 P C B 4 -7.823 62.579 2.969 1.00118.55 P
ATOM 3 OP1 C B 4 -6.969 63.793 3.004 1.00118.36 O
ATOM 4 OP2 C B 4 -8.917 62.423 3.967 1.00117.95 O
ATOM 5 O5' C B 4 -8.464 62.489 1.512 1.00119.24 O
ATOM 6 C5' C B 4 -7.624 62.393 0.370 1.00120.95 C
ATOM 7 C4' C B 4 -8.420 62.006 -0.852 1.00122.29 C
ATOM 8 O4' C B 4 -8.976 60.669 -0.718 1.00122.61 O
ATOM 9 C3' C B 4 -9.629 62.862 -1.171 1.00122.86 C
ATOM 10 O3' C B 4 -9.282 64.071 -1.818 1.00122.88 O
ATOM 11 C2' C B 4 -10.440 61.957 -2.092 1.00123.25 C
ATOM 12 O2' C B 4 -10.021 62.018 -3.441 1.00124.25 O
ATOM 13 C1' C B 4 -10.149 60.570 -1.514 1.00122.57 C
ATOM 14 N1 C B 4 -11.287 60.117 -0.697 1.00121.91 N
ATOM 15 C2 C B 4 -12.417 59.630 -1.367 1.00122.15 C
ATOM 16 O2 C B 4 -12.391 59.552 -2.606 1.00122.21 O
ATOM 17 N3 C B 4 -13.506 59.261 -0.656 1.00121.71 N
ATOM 18 C4 C B 4 -13.495 59.356 0.674 1.00121.27 C
ATOM 19 N4 C B 4 -14.605 58.994 1.329 1.00120.91 N
ATOM 20 C5 C B 4 -12.350 59.828 1.388 1.00121.29 C
ATOM 21 C6 C B 4 -11.273 60.190 0.668 1.00121.19 C
ATOM 22 P G B 5 -10.372 65.241 -1.917 1.00123.00 P
ATOM 23 OP1 G B 5 -9.692 66.450 -2.449 1.00124.06 O
ATOM 24 OP2 G B 5 -11.077 65.306 -0.609 1.00122.49 O
ATOM 25 O5' G B 5 -11.398 64.714 -3.015 1.00120.99 O
TER
ATOM 2 P C A 3 -6.475 58.842 7.588 1.00108.85 P
ATOM 3 OP1 C A 3 -5.316 59.735 7.843 1.00109.01 O
ATOM 4 OP2 C A 3 -7.718 59.006 8.383 1.00108.60 O
ATOM 5 O5' C A 3 -6.866 58.913 6.045 1.00108.92 O
ATOM 6 C5' C A 3 -5.851 58.906 5.062 1.00110.95 C
ATOM 7 C4' C A 3 -6.432 58.919 3.669 1.00112.51 C
ATOM 8 O4' C A 3 -7.154 57.688 3.386 1.00112.00 O
ATOM 9 C3' C A 3 -7.438 59.984 3.263 1.00113.67 C
ATOM 10 O3' C A 3 -6.862 61.279 3.056 1.00116.61 O
ATOM 11 C2' C A 3 -7.966 59.394 1.950 1.00112.93 C
ATOM 12 O2' C A 3 -7.099 59.637 0.853 1.00111.76 O
ATOM 13 C1' C A 3 -7.958 57.889 2.237 1.00111.05 C
ATOM 14 N1 C A 3 -9.324 57.380 2.462 1.00109.38 N
ATOM 15 C2 C A 3 -10.027 56.832 1.364 1.00108.81 C
ATOM 16 O2 C A 3 -9.464 56.726 0.274 1.00108.27 O
ATOM 17 N3 C A 3 -11.301 56.435 1.518 1.00108.34 N
ATOM 18 C4 C A 3 -11.892 56.546 2.699 1.00108.11 C
ATOM 19 N4 C A 3 -13.165 56.149 2.768 1.00107.51 N
ATOM 20 C5 C A 3 -11.205 57.069 3.849 1.00108.24 C
ATOM 21 C6 C A 3 -9.927 57.466 3.685 1.00108.54 C
ATOM 22 P C A 4 -7.823 62.579 2.969 1.00118.55 P
ATOM 23 OP1 C A 4 -6.969 63.793 3.004 1.00118.36 O
ATOM 24 OP2 C A 4 -8.917 62.423 3.967 1.00117.95 O
ATOM 25 O5' C A 4 -8.464 62.489 1.512 1.00119.24 O
TER
ATOM 1 O3' C B 3 -6.862 61.279 3.056 1.00116.61 O
ATOM 2 P C B 4 -7.823 62.579 2.969 1.00118.55 P
ATOM 3 OP1 C B 4 -6.969 63.793 3.004 1.00118.36 O
ATOM 4 OP2 C B 4 -8.917 62.423 3.967 1.00117.95 O
ATOM 5 O5' C B 4 -8.464 62.489 1.512 1.00119.24 O
ATOM 6 C5' C B 4 -7.624 62.393 0.370 1.00120.95 C
ATOM 7 C4' C B 4 -8.420 62.006 -0.852 1.00122.29 C
ATOM 8 O4' C B 4 -8.976 60.669 -0.718 1.00122.61 O
ATOM 9 C3' C B 4 -9.629 62.862 -1.171 1.00122.86 C
ATOM 10 O3' C B 4 -9.282 64.071 -1.818 1.00122.88 O
ATOM 11 C2' C B 4 -10.440 61.957 -2.092 1.00123.25 C
ATOM 12 O2' C B 4 -10.021 62.018 -3.441 1.00124.25 O
ATOM 13 C1' C B 4 -10.149 60.570 -1.514 1.00122.57 C
ATOM 14 N1 C B 4 -11.287 60.117 -0.697 1.00121.91 N
ATOM 15 C2 C B 4 -12.417 59.630 -1.367 1.00122.15 C
ATOM 16 O2 C B 4 -12.391 59.552 -2.606 1.00122.21 O
ATOM 17 N3 C B 4 -13.506 59.261 -0.656 1.00121.71 N
ATOM 18 C4 C B 4 -13.495 59.356 0.674 1.00121.27 C
ATOM 19 N4 C B 4 -14.605 58.994 1.329 1.00120.91 N
ATOM 20 C5 C B 4 -12.350 59.828 1.388 1.00121.29 C
ATOM 21 C6 C B 4 -11.273 60.190 0.668 1.00121.19 C
ATOM 22 P G B 5 -10.372 65.241 -1.917 1.00123.00 P
ATOM 23 OP1 G B 5 -9.692 66.450 -2.449 1.00124.06 O
ATOM 24 OP2 G B 5 -11.077 65.306 -0.609 1.00122.49 O
ATOM 25 O5' G B 5 -11.398 64.714 -3.015 1.00120.99 O
TER
Atoms:
C2: (-10.027,56.832,1.364)
OP1: (-5.316,59.735,7.843)
OP2: (-7.718,59.006,8.383)
C4: (-11.892,56.546,2.699)
O5': (-6.866,58.913,6.045)
C3': (-7.438,59.984,3.263)
C1': (-7.958,57.889,2.237)
O4': (-7.154,57.688,3.386)
C5': (-5.851,58.906,5.062)
P: (-6.475,58.842,7.588)
O2: (-9.464,56.726,0.274)
C4': (-6.432,58.919,3.669)
C2': (-7.966,59.394,1.950)
O2': (-7.099,59.637,0.853)
N1: (-9.324,57.380,2.462)
N3: (-11.301,56.435,1.518)
N4: (-13.165,56.149,2.768)
C6: (-9.927,57.466,3.685)
C5: (-11.205,57.069,3.849)
O3': (-6.862,61.279,3.056)
OP1: (-5.316,59.735,7.843)
OP2: (-7.718,59.006,8.383)
C4: (-11.892,56.546,2.699)
O5': (-6.866,58.913,6.045)
C3': (-7.438,59.984,3.263)
C1': (-7.958,57.889,2.237)
O4': (-7.154,57.688,3.386)
C5': (-5.851,58.906,5.062)
P: (-6.475,58.842,7.588)
O2: (-9.464,56.726,0.274)
C4': (-6.432,58.919,3.669)
C2': (-7.966,59.394,1.950)
O2': (-7.099,59.637,0.853)
N1: (-9.324,57.380,2.462)
N3: (-11.301,56.435,1.518)
N4: (-13.165,56.149,2.768)
C6: (-9.927,57.466,3.685)
C5: (-11.205,57.069,3.849)
O3': (-6.862,61.279,3.056)
C2: (-12.417,59.630,-1.367)
OP1: (-6.969,63.793,3.004)
OP2: (-8.917,62.423,3.967)
C4: (-13.495,59.356,0.674)
O5': (-8.464,62.489,1.512)
C3': (-9.629,62.862,-1.171)
C1': (-10.149,60.570,-1.514)
O4': (-8.976,60.669,-0.718)
C5': (-7.624,62.393,0.370)
P: (-7.823,62.579,2.969)
O2: (-12.391,59.552,-2.606)
C4': (-8.420,62.006,-0.852)
C2': (-10.440,61.957,-2.092)
O2': (-10.021,62.018,-3.441)
N1: (-11.287,60.117,-0.697)
N3: (-13.506,59.261,-0.656)
N4: (-14.605,58.994,1.329)
C6: (-11.273,60.190,0.668)
C5: (-12.350,59.828,1.388)
O3': (-9.282,64.071,-1.818)
OP1: (-6.969,63.793,3.004)
OP2: (-8.917,62.423,3.967)
C4: (-13.495,59.356,0.674)
O5': (-8.464,62.489,1.512)
C3': (-9.629,62.862,-1.171)
C1': (-10.149,60.570,-1.514)
O4': (-8.976,60.669,-0.718)
C5': (-7.624,62.393,0.370)
P: (-7.823,62.579,2.969)
O2: (-12.391,59.552,-2.606)
C4': (-8.420,62.006,-0.852)
C2': (-10.440,61.957,-2.092)
O2': (-10.021,62.018,-3.441)
N1: (-11.287,60.117,-0.697)
N3: (-13.506,59.261,-0.656)
N4: (-14.605,58.994,1.329)
C6: (-11.273,60.190,0.668)
C5: (-12.350,59.828,1.388)
O3': (-9.282,64.071,-1.818)
Image (generated by PyMOL):