Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NVI:E15:E5
Extra
PDB:
ATOM 1 O3' C A 14 2.533 -1.622 2.504 1.00 78.79 O
ATOM 2 P G A 15 4.103 -1.591 2.125 1.00 70.92 P
ATOM 3 OP1 G A 15 4.880 -1.663 3.416 1.00 64.90 O
ATOM 4 OP2 G A 15 4.313 -0.428 1.210 1.00 77.00 O
ATOM 5 O5' G A 15 4.285 -2.938 1.314 1.00 66.07 O
ATOM 6 C5' G A 15 3.530 -3.162 0.143 1.00 67.81 C
ATOM 7 C4' G A 15 3.983 -4.392 -0.569 1.00 66.49 C
ATOM 8 O4' G A 15 3.006 -4.739 -1.578 1.00 67.63 O
ATOM 9 C3' G A 15 5.309 -4.271 -1.295 1.00 64.98 C
ATOM 10 O3' G A 15 5.904 -5.564 -1.341 1.00 64.36 O
ATOM 11 C2' G A 15 4.862 -3.883 -2.697 1.00 68.38 C
ATOM 12 O2' G A 15 5.815 -4.156 -3.704 1.00 74.50 O
ATOM 13 C1' G A 15 3.623 -4.758 -2.841 1.00 69.18 C
ATOM 14 N9 G A 15 2.651 -4.301 -3.834 1.00 69.31 N
ATOM 15 C8 G A 15 2.204 -5.043 -4.903 1.00 73.04 C
ATOM 16 N7 G A 15 1.314 -4.429 -5.637 1.00 70.92 N
ATOM 17 C5 G A 15 1.157 -3.209 -4.996 1.00 64.56 C
ATOM 18 C6 G A 15 0.327 -2.114 -5.334 1.00 67.31 C
ATOM 19 O6 G A 15 -0.440 -2.047 -6.308 1.00 69.16 O
ATOM 20 N1 G A 15 0.452 -1.062 -4.418 1.00 61.28 N
ATOM 21 C2 G A 15 1.291 -1.064 -3.329 1.00 67.26 C
ATOM 22 N2 G A 15 1.300 0.028 -2.548 1.00 68.99 N
ATOM 23 N3 G A 15 2.082 -2.082 -3.015 1.00 71.62 N
ATOM 24 C4 G A 15 1.968 -3.113 -3.883 1.00 67.26 C
ATOM 25 P U A 16 7.431 -5.790 -0.917 1.00 70.68 P
ATOM 26 OP1 U A 16 8.175 -4.579 -1.312 1.00 62.61 O
ATOM 27 OP2 U A 16 7.833 -7.097 -1.493 1.00 69.45 O
ATOM 28 O5' U A 16 7.376 -5.894 0.682 1.00 69.31 O
TER
ATOM 1 O3' G B 4 -4.085 -6.955 -7.180 1.00 90.49 O
ATOM 2 P A B 5 -3.888 -6.029 -8.484 1.00 97.97 P
ATOM 3 OP1 A B 5 -4.890 -6.493 -9.499 1.00 83.09 O
ATOM 4 OP2 A B 5 -2.432 -6.062 -8.835 1.00 85.42 O
ATOM 5 O5' A B 5 -4.280 -4.582 -7.952 1.00 87.24 O
ATOM 6 C5' A B 5 -5.622 -4.264 -7.625 1.00 77.19 C
ATOM 7 C4' A B 5 -5.694 -3.019 -6.784 1.00 84.83 C
ATOM 8 O4' A B 5 -5.167 -3.305 -5.458 1.00 81.64 O
ATOM 9 C3' A B 5 -4.890 -1.829 -7.312 1.00 81.72 C
ATOM 10 O3' A B 5 -5.554 -0.621 -6.965 1.00 93.82 O
ATOM 11 C2' A B 5 -3.609 -1.909 -6.504 1.00 77.01 C
ATOM 12 O2' A B 5 -2.924 -0.681 -6.389 1.00 75.94 O
ATOM 13 C1' A B 5 -4.141 -2.383 -5.157 1.00 75.34 C
ATOM 14 N9 A B 5 -3.144 -3.053 -4.332 1.00 68.21 N
ATOM 15 C8 A B 5 -2.577 -4.278 -4.540 1.00 71.02 C
ATOM 16 N7 A B 5 -1.689 -4.593 -3.634 1.00 66.99 N
ATOM 17 C5 A B 5 -1.688 -3.501 -2.794 1.00 64.65 C
ATOM 18 C6 A B 5 -0.966 -3.223 -1.646 1.00 65.42 C
ATOM 19 N6 A B 5 -0.090 -4.082 -1.150 1.00 71.40 N
ATOM 20 N1 A B 5 -1.168 -2.050 -1.023 1.00 68.46 N
ATOM 21 C2 A B 5 -2.062 -1.210 -1.547 1.00 69.31 C
ATOM 22 N3 A B 5 -2.809 -1.370 -2.630 1.00 67.38 N
ATOM 23 C4 A B 5 -2.569 -2.544 -3.210 1.00 65.36 C
ATOM 24 P C B 6 -6.742 -0.048 -7.874 1.00100.84 P
ATOM 25 OP1 C B 6 -6.754 -0.833 -9.137 1.00 92.58 O
ATOM 26 OP2 C B 6 -6.548 1.430 -7.938 1.00 77.21 O
ATOM 27 O5' C B 6 -8.031 -0.399 -7.008 1.00 87.25 O
TER
ATOM 2 P G A 15 4.103 -1.591 2.125 1.00 70.92 P
ATOM 3 OP1 G A 15 4.880 -1.663 3.416 1.00 64.90 O
ATOM 4 OP2 G A 15 4.313 -0.428 1.210 1.00 77.00 O
ATOM 5 O5' G A 15 4.285 -2.938 1.314 1.00 66.07 O
ATOM 6 C5' G A 15 3.530 -3.162 0.143 1.00 67.81 C
ATOM 7 C4' G A 15 3.983 -4.392 -0.569 1.00 66.49 C
ATOM 8 O4' G A 15 3.006 -4.739 -1.578 1.00 67.63 O
ATOM 9 C3' G A 15 5.309 -4.271 -1.295 1.00 64.98 C
ATOM 10 O3' G A 15 5.904 -5.564 -1.341 1.00 64.36 O
ATOM 11 C2' G A 15 4.862 -3.883 -2.697 1.00 68.38 C
ATOM 12 O2' G A 15 5.815 -4.156 -3.704 1.00 74.50 O
ATOM 13 C1' G A 15 3.623 -4.758 -2.841 1.00 69.18 C
ATOM 14 N9 G A 15 2.651 -4.301 -3.834 1.00 69.31 N
ATOM 15 C8 G A 15 2.204 -5.043 -4.903 1.00 73.04 C
ATOM 16 N7 G A 15 1.314 -4.429 -5.637 1.00 70.92 N
ATOM 17 C5 G A 15 1.157 -3.209 -4.996 1.00 64.56 C
ATOM 18 C6 G A 15 0.327 -2.114 -5.334 1.00 67.31 C
ATOM 19 O6 G A 15 -0.440 -2.047 -6.308 1.00 69.16 O
ATOM 20 N1 G A 15 0.452 -1.062 -4.418 1.00 61.28 N
ATOM 21 C2 G A 15 1.291 -1.064 -3.329 1.00 67.26 C
ATOM 22 N2 G A 15 1.300 0.028 -2.548 1.00 68.99 N
ATOM 23 N3 G A 15 2.082 -2.082 -3.015 1.00 71.62 N
ATOM 24 C4 G A 15 1.968 -3.113 -3.883 1.00 67.26 C
ATOM 25 P U A 16 7.431 -5.790 -0.917 1.00 70.68 P
ATOM 26 OP1 U A 16 8.175 -4.579 -1.312 1.00 62.61 O
ATOM 27 OP2 U A 16 7.833 -7.097 -1.493 1.00 69.45 O
ATOM 28 O5' U A 16 7.376 -5.894 0.682 1.00 69.31 O
TER
ATOM 1 O3' G B 4 -4.085 -6.955 -7.180 1.00 90.49 O
ATOM 2 P A B 5 -3.888 -6.029 -8.484 1.00 97.97 P
ATOM 3 OP1 A B 5 -4.890 -6.493 -9.499 1.00 83.09 O
ATOM 4 OP2 A B 5 -2.432 -6.062 -8.835 1.00 85.42 O
ATOM 5 O5' A B 5 -4.280 -4.582 -7.952 1.00 87.24 O
ATOM 6 C5' A B 5 -5.622 -4.264 -7.625 1.00 77.19 C
ATOM 7 C4' A B 5 -5.694 -3.019 -6.784 1.00 84.83 C
ATOM 8 O4' A B 5 -5.167 -3.305 -5.458 1.00 81.64 O
ATOM 9 C3' A B 5 -4.890 -1.829 -7.312 1.00 81.72 C
ATOM 10 O3' A B 5 -5.554 -0.621 -6.965 1.00 93.82 O
ATOM 11 C2' A B 5 -3.609 -1.909 -6.504 1.00 77.01 C
ATOM 12 O2' A B 5 -2.924 -0.681 -6.389 1.00 75.94 O
ATOM 13 C1' A B 5 -4.141 -2.383 -5.157 1.00 75.34 C
ATOM 14 N9 A B 5 -3.144 -3.053 -4.332 1.00 68.21 N
ATOM 15 C8 A B 5 -2.577 -4.278 -4.540 1.00 71.02 C
ATOM 16 N7 A B 5 -1.689 -4.593 -3.634 1.00 66.99 N
ATOM 17 C5 A B 5 -1.688 -3.501 -2.794 1.00 64.65 C
ATOM 18 C6 A B 5 -0.966 -3.223 -1.646 1.00 65.42 C
ATOM 19 N6 A B 5 -0.090 -4.082 -1.150 1.00 71.40 N
ATOM 20 N1 A B 5 -1.168 -2.050 -1.023 1.00 68.46 N
ATOM 21 C2 A B 5 -2.062 -1.210 -1.547 1.00 69.31 C
ATOM 22 N3 A B 5 -2.809 -1.370 -2.630 1.00 67.38 N
ATOM 23 C4 A B 5 -2.569 -2.544 -3.210 1.00 65.36 C
ATOM 24 P C B 6 -6.742 -0.048 -7.874 1.00100.84 P
ATOM 25 OP1 C B 6 -6.754 -0.833 -9.137 1.00 92.58 O
ATOM 26 OP2 C B 6 -6.548 1.430 -7.938 1.00 77.21 O
ATOM 27 O5' C B 6 -8.031 -0.399 -7.008 1.00 87.25 O
TER
Atoms:
OP1: (4.880,-1.663,3.416)
OP2: (4.313,-0.428,1.210)
C3': (5.309,-4.271,-1.295)
C1': (3.623,-4.758,-2.841)
C5': (3.530,-3.162,0.143)
O6: (-0.440,-2.047,-6.308)
O4': (3.006,-4.739,-1.578)
C8: (2.204,-5.043,-4.903)
C2: (1.291,-1.064,-3.329)
C6: (0.327,-2.114,-5.334)
C5: (1.157,-3.209,-4.996)
C4: (1.968,-3.113,-3.883)
P: (4.103,-1.591,2.125)
C4': (3.983,-4.392,-0.569)
C2': (4.862,-3.883,-2.697)
O2': (5.815,-4.156,-3.704)
N1: (0.452,-1.062,-4.418)
N2: (1.300,0.028,-2.548)
N3: (2.082,-2.082,-3.015)
N7: (1.314,-4.429,-5.637)
N9: (2.651,-4.301,-3.834)
O5': (4.285,-2.938,1.314)
O3': (5.904,-5.564,-1.341)
OP2: (4.313,-0.428,1.210)
C3': (5.309,-4.271,-1.295)
C1': (3.623,-4.758,-2.841)
C5': (3.530,-3.162,0.143)
O6: (-0.440,-2.047,-6.308)
O4': (3.006,-4.739,-1.578)
C8: (2.204,-5.043,-4.903)
C2: (1.291,-1.064,-3.329)
C6: (0.327,-2.114,-5.334)
C5: (1.157,-3.209,-4.996)
C4: (1.968,-3.113,-3.883)
P: (4.103,-1.591,2.125)
C4': (3.983,-4.392,-0.569)
C2': (4.862,-3.883,-2.697)
O2': (5.815,-4.156,-3.704)
N1: (0.452,-1.062,-4.418)
N2: (1.300,0.028,-2.548)
N3: (2.082,-2.082,-3.015)
N7: (1.314,-4.429,-5.637)
N9: (2.651,-4.301,-3.834)
O5': (4.285,-2.938,1.314)
O3': (5.904,-5.564,-1.341)
OP1: (-4.890,-6.493,-9.499)
OP2: (-2.432,-6.062,-8.835)
C3': (-4.890,-1.829,-7.312)
C1': (-4.141,-2.383,-5.157)
C5': (-5.622,-4.264,-7.625)
O4': (-5.167,-3.305,-5.458)
C8: (-2.577,-4.278,-4.540)
O2': (-2.924,-0.681,-6.389)
C6: (-0.966,-3.223,-1.646)
C5: (-1.688,-3.501,-2.794)
C4: (-2.569,-2.544,-3.210)
P: (-3.888,-6.029,-8.484)
C4': (-5.694,-3.019,-6.784)
C2': (-3.609,-1.909,-6.504)
C2: (-2.062,-1.210,-1.547)
N1: (-1.168,-2.050,-1.023)
N3: (-2.809,-1.370,-2.630)
N6: (-0.090,-4.082,-1.150)
N7: (-1.689,-4.593,-3.634)
N9: (-3.144,-3.053,-4.332)
O5': (-4.280,-4.582,-7.952)
O3': (-5.554,-0.621,-6.965)
OP2: (-2.432,-6.062,-8.835)
C3': (-4.890,-1.829,-7.312)
C1': (-4.141,-2.383,-5.157)
C5': (-5.622,-4.264,-7.625)
O4': (-5.167,-3.305,-5.458)
C8: (-2.577,-4.278,-4.540)
O2': (-2.924,-0.681,-6.389)
C6: (-0.966,-3.223,-1.646)
C5: (-1.688,-3.501,-2.794)
C4: (-2.569,-2.544,-3.210)
P: (-3.888,-6.029,-8.484)
C4': (-5.694,-3.019,-6.784)
C2': (-3.609,-1.909,-6.504)
C2: (-2.062,-1.210,-1.547)
N1: (-1.168,-2.050,-1.023)
N3: (-2.809,-1.370,-2.630)
N6: (-0.090,-4.082,-1.150)
N7: (-1.689,-4.593,-3.634)
N9: (-3.144,-3.053,-4.332)
O5': (-4.280,-4.582,-7.952)
O3': (-5.554,-0.621,-6.965)
Image (generated by PyMOL):