Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:A47:A48
Extra
PDB:
ATOM 1 O3' U A 46 -4.259 19.389 -5.500 1.00 25.32 O
ATOM 2 P G A 47 -3.010 20.206 -6.076 1.00 24.34 P
ATOM 3 OP1 G A 47 -2.908 21.457 -5.307 1.00 29.65 O
ATOM 4 OP2 G A 47 -3.122 20.235 -7.552 1.00 25.14 O
ATOM 5 O5' G A 47 -1.758 19.284 -5.690 1.00 29.08 O
ATOM 6 C5' G A 47 -1.295 19.240 -4.343 1.00 26.79 C
ATOM 7 C4' G A 47 -0.203 18.199 -4.177 1.00 24.25 C
ATOM 8 O4' G A 47 -0.757 16.901 -4.511 1.00 24.02 O
ATOM 9 C3' G A 47 1.011 18.349 -5.087 1.00 24.10 C
ATOM 10 O3' G A 47 2.015 19.158 -4.490 1.00 31.02 O
ATOM 11 C2' G A 47 1.513 16.915 -5.191 1.00 24.02 C
ATOM 12 O2' G A 47 2.341 16.541 -4.109 1.00 25.85 O
ATOM 13 C1' G A 47 0.217 16.114 -5.162 1.00 23.89 C
ATOM 14 N9 G A 47 -0.262 15.818 -6.502 1.00 24.82 N
ATOM 15 C8 G A 47 -1.051 16.615 -7.296 1.00 23.78 C
ATOM 16 N7 G A 47 -1.317 16.082 -8.454 1.00 23.67 N
ATOM 17 C5 G A 47 -0.659 14.861 -8.416 1.00 22.51 C
ATOM 18 C6 G A 47 -0.585 13.845 -9.387 1.00 21.04 C
ATOM 19 O6 G A 47 -1.111 13.842 -10.500 1.00 18.49 O
ATOM 20 N1 G A 47 0.179 12.762 -8.962 1.00 25.27 N
ATOM 21 C2 G A 47 0.802 12.678 -7.739 1.00 22.90 C
ATOM 22 N2 G A 47 1.501 11.559 -7.495 1.00 24.78 N
ATOM 23 N3 G A 47 0.738 13.626 -6.817 1.00 24.19 N
ATOM 24 C4 G A 47 -0.005 14.681 -7.225 1.00 24.12 C
ATOM 25 P A A 48 2.022 20.751 -4.642 1.00 28.42 P
ATOM 26 OP1 A A 48 3.383 21.207 -4.292 1.00 33.03 O
ATOM 27 OP2 A A 48 0.857 21.283 -3.907 1.00 29.13 O
ATOM 28 O5' A A 48 1.814 20.999 -6.208 1.00 24.55 O
TER
ATOM 1 O3' G B 47 2.015 19.158 -4.490 1.00 31.02 O
ATOM 2 P A B 48 2.022 20.751 -4.642 1.00 28.42 P
ATOM 3 OP1 A B 48 3.383 21.207 -4.292 1.00 33.03 O
ATOM 4 OP2 A B 48 0.857 21.283 -3.907 1.00 29.13 O
ATOM 5 O5' A B 48 1.814 20.999 -6.208 1.00 24.55 O
ATOM 6 C5' A B 48 1.925 22.319 -6.735 1.00 27.91 C
ATOM 7 C4' A B 48 1.430 22.377 -8.170 1.00 25.27 C
ATOM 8 O4' A B 48 2.120 21.363 -8.951 1.00 28.76 O
ATOM 9 C3' A B 48 -0.054 22.082 -8.348 1.00 24.88 C
ATOM 10 O3' A B 48 -0.548 22.729 -9.517 1.00 27.52 O
ATOM 11 C2' A B 48 -0.037 20.564 -8.513 1.00 23.97 C
ATOM 12 O2' A B 48 -1.172 20.076 -9.198 1.00 23.22 O
ATOM 13 C1' A B 48 1.208 20.369 -9.370 1.00 25.05 C
ATOM 14 N9 A B 48 1.823 19.055 -9.190 1.00 24.85 N
ATOM 15 C8 A B 48 2.730 18.694 -8.231 1.00 24.60 C
ATOM 16 N7 A B 48 3.112 17.441 -8.306 1.00 24.18 N
ATOM 17 C5 A B 48 2.405 16.943 -9.386 1.00 24.40 C
ATOM 18 C6 A B 48 2.362 15.670 -9.983 1.00 23.14 C
ATOM 19 N6 A B 48 3.083 14.630 -9.549 1.00 22.90 N
ATOM 20 N1 A B 48 1.553 15.509 -11.050 1.00 24.02 N
ATOM 21 C2 A B 48 0.831 16.549 -11.480 1.00 22.17 C
ATOM 22 N3 A B 48 0.791 17.790 -10.998 1.00 20.89 N
ATOM 23 C4 A B 48 1.606 17.924 -9.943 1.00 21.35 C
ATOM 24 P A B 49 -0.797 24.315 -9.540 1.00 25.26 P
ATOM 25 OP1 A B 49 -0.859 24.810 -8.148 1.00 24.07 O
ATOM 26 OP2 A B 49 -1.910 24.580 -10.475 1.00 26.50 O
ATOM 27 O5' A B 49 0.556 24.864 -10.189 1.00 26.00 O
TER
ATOM 2 P G A 47 -3.010 20.206 -6.076 1.00 24.34 P
ATOM 3 OP1 G A 47 -2.908 21.457 -5.307 1.00 29.65 O
ATOM 4 OP2 G A 47 -3.122 20.235 -7.552 1.00 25.14 O
ATOM 5 O5' G A 47 -1.758 19.284 -5.690 1.00 29.08 O
ATOM 6 C5' G A 47 -1.295 19.240 -4.343 1.00 26.79 C
ATOM 7 C4' G A 47 -0.203 18.199 -4.177 1.00 24.25 C
ATOM 8 O4' G A 47 -0.757 16.901 -4.511 1.00 24.02 O
ATOM 9 C3' G A 47 1.011 18.349 -5.087 1.00 24.10 C
ATOM 10 O3' G A 47 2.015 19.158 -4.490 1.00 31.02 O
ATOM 11 C2' G A 47 1.513 16.915 -5.191 1.00 24.02 C
ATOM 12 O2' G A 47 2.341 16.541 -4.109 1.00 25.85 O
ATOM 13 C1' G A 47 0.217 16.114 -5.162 1.00 23.89 C
ATOM 14 N9 G A 47 -0.262 15.818 -6.502 1.00 24.82 N
ATOM 15 C8 G A 47 -1.051 16.615 -7.296 1.00 23.78 C
ATOM 16 N7 G A 47 -1.317 16.082 -8.454 1.00 23.67 N
ATOM 17 C5 G A 47 -0.659 14.861 -8.416 1.00 22.51 C
ATOM 18 C6 G A 47 -0.585 13.845 -9.387 1.00 21.04 C
ATOM 19 O6 G A 47 -1.111 13.842 -10.500 1.00 18.49 O
ATOM 20 N1 G A 47 0.179 12.762 -8.962 1.00 25.27 N
ATOM 21 C2 G A 47 0.802 12.678 -7.739 1.00 22.90 C
ATOM 22 N2 G A 47 1.501 11.559 -7.495 1.00 24.78 N
ATOM 23 N3 G A 47 0.738 13.626 -6.817 1.00 24.19 N
ATOM 24 C4 G A 47 -0.005 14.681 -7.225 1.00 24.12 C
ATOM 25 P A A 48 2.022 20.751 -4.642 1.00 28.42 P
ATOM 26 OP1 A A 48 3.383 21.207 -4.292 1.00 33.03 O
ATOM 27 OP2 A A 48 0.857 21.283 -3.907 1.00 29.13 O
ATOM 28 O5' A A 48 1.814 20.999 -6.208 1.00 24.55 O
TER
ATOM 1 O3' G B 47 2.015 19.158 -4.490 1.00 31.02 O
ATOM 2 P A B 48 2.022 20.751 -4.642 1.00 28.42 P
ATOM 3 OP1 A B 48 3.383 21.207 -4.292 1.00 33.03 O
ATOM 4 OP2 A B 48 0.857 21.283 -3.907 1.00 29.13 O
ATOM 5 O5' A B 48 1.814 20.999 -6.208 1.00 24.55 O
ATOM 6 C5' A B 48 1.925 22.319 -6.735 1.00 27.91 C
ATOM 7 C4' A B 48 1.430 22.377 -8.170 1.00 25.27 C
ATOM 8 O4' A B 48 2.120 21.363 -8.951 1.00 28.76 O
ATOM 9 C3' A B 48 -0.054 22.082 -8.348 1.00 24.88 C
ATOM 10 O3' A B 48 -0.548 22.729 -9.517 1.00 27.52 O
ATOM 11 C2' A B 48 -0.037 20.564 -8.513 1.00 23.97 C
ATOM 12 O2' A B 48 -1.172 20.076 -9.198 1.00 23.22 O
ATOM 13 C1' A B 48 1.208 20.369 -9.370 1.00 25.05 C
ATOM 14 N9 A B 48 1.823 19.055 -9.190 1.00 24.85 N
ATOM 15 C8 A B 48 2.730 18.694 -8.231 1.00 24.60 C
ATOM 16 N7 A B 48 3.112 17.441 -8.306 1.00 24.18 N
ATOM 17 C5 A B 48 2.405 16.943 -9.386 1.00 24.40 C
ATOM 18 C6 A B 48 2.362 15.670 -9.983 1.00 23.14 C
ATOM 19 N6 A B 48 3.083 14.630 -9.549 1.00 22.90 N
ATOM 20 N1 A B 48 1.553 15.509 -11.050 1.00 24.02 N
ATOM 21 C2 A B 48 0.831 16.549 -11.480 1.00 22.17 C
ATOM 22 N3 A B 48 0.791 17.790 -10.998 1.00 20.89 N
ATOM 23 C4 A B 48 1.606 17.924 -9.943 1.00 21.35 C
ATOM 24 P A B 49 -0.797 24.315 -9.540 1.00 25.26 P
ATOM 25 OP1 A B 49 -0.859 24.810 -8.148 1.00 24.07 O
ATOM 26 OP2 A B 49 -1.910 24.580 -10.475 1.00 26.50 O
ATOM 27 O5' A B 49 0.556 24.864 -10.189 1.00 26.00 O
TER
Atoms:
OP1: (-2.908,21.457,-5.307)
OP2: (-3.122,20.235,-7.552)
C3': (1.011,18.349,-5.087)
C1': (0.217,16.114,-5.162)
C5': (-1.295,19.240,-4.343)
O6: (-1.111,13.842,-10.500)
O4': (-0.757,16.901,-4.511)
C8: (-1.051,16.615,-7.296)
C2: (0.802,12.678,-7.739)
C6: (-0.585,13.845,-9.387)
C5: (-0.659,14.861,-8.416)
C4: (-0.005,14.681,-7.225)
P: (-3.010,20.206,-6.076)
C4': (-0.203,18.199,-4.177)
C2': (1.513,16.915,-5.191)
O2': (2.341,16.541,-4.109)
N1: (0.179,12.762,-8.962)
N2: (1.501,11.559,-7.495)
N3: (0.738,13.626,-6.817)
N7: (-1.317,16.082,-8.454)
N9: (-0.262,15.818,-6.502)
O5': (-1.758,19.284,-5.690)
O3': (2.015,19.158,-4.490)
OP2: (-3.122,20.235,-7.552)
C3': (1.011,18.349,-5.087)
C1': (0.217,16.114,-5.162)
C5': (-1.295,19.240,-4.343)
O6: (-1.111,13.842,-10.500)
O4': (-0.757,16.901,-4.511)
C8: (-1.051,16.615,-7.296)
C2: (0.802,12.678,-7.739)
C6: (-0.585,13.845,-9.387)
C5: (-0.659,14.861,-8.416)
C4: (-0.005,14.681,-7.225)
P: (-3.010,20.206,-6.076)
C4': (-0.203,18.199,-4.177)
C2': (1.513,16.915,-5.191)
O2': (2.341,16.541,-4.109)
N1: (0.179,12.762,-8.962)
N2: (1.501,11.559,-7.495)
N3: (0.738,13.626,-6.817)
N7: (-1.317,16.082,-8.454)
N9: (-0.262,15.818,-6.502)
O5': (-1.758,19.284,-5.690)
O3': (2.015,19.158,-4.490)
OP1: (3.383,21.207,-4.292)
OP2: (0.857,21.283,-3.907)
C3': (-0.054,22.082,-8.348)
C1': (1.208,20.369,-9.370)
C5': (1.925,22.319,-6.735)
O4': (2.120,21.363,-8.951)
C8: (2.730,18.694,-8.231)
O2': (-1.172,20.076,-9.198)
C6: (2.362,15.670,-9.983)
C5: (2.405,16.943,-9.386)
C4: (1.606,17.924,-9.943)
P: (2.022,20.751,-4.642)
C4': (1.430,22.377,-8.170)
C2': (-0.037,20.564,-8.513)
C2: (0.831,16.549,-11.480)
N1: (1.553,15.509,-11.050)
N3: (0.791,17.790,-10.998)
N6: (3.083,14.630,-9.549)
N7: (3.112,17.441,-8.306)
N9: (1.823,19.055,-9.190)
O5': (1.814,20.999,-6.208)
O3': (-0.548,22.729,-9.517)
OP2: (0.857,21.283,-3.907)
C3': (-0.054,22.082,-8.348)
C1': (1.208,20.369,-9.370)
C5': (1.925,22.319,-6.735)
O4': (2.120,21.363,-8.951)
C8: (2.730,18.694,-8.231)
O2': (-1.172,20.076,-9.198)
C6: (2.362,15.670,-9.983)
C5: (2.405,16.943,-9.386)
C4: (1.606,17.924,-9.943)
P: (2.022,20.751,-4.642)
C4': (1.430,22.377,-8.170)
C2': (-0.037,20.564,-8.513)
C2: (0.831,16.549,-11.480)
N1: (1.553,15.509,-11.050)
N3: (0.791,17.790,-10.998)
N6: (3.083,14.630,-9.549)
N7: (3.112,17.441,-8.306)
N9: (1.823,19.055,-9.190)
O5': (1.814,20.999,-6.208)
O3': (-0.548,22.729,-9.517)
Image (generated by PyMOL):