Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A46:A49
Extra
PDB:
ATOM 1 O3' U A 45 55.483 165.457 36.124 1.00 51.51 O
ATOM 2 P G A 46 54.497 166.450 36.917 1.00 52.73 P
ATOM 3 OP1 G A 46 54.135 167.585 36.030 1.00 53.52 O
ATOM 4 OP2 G A 46 55.078 166.719 38.244 1.00 53.51 O
ATOM 5 O5' G A 46 53.169 165.597 37.088 1.00 52.22 O
ATOM 6 C5' G A 46 52.434 165.176 35.935 1.00 52.00 C
ATOM 7 C4' G A 46 50.971 165.224 36.216 1.00 53.16 C
ATOM 8 O4' G A 46 50.628 164.135 37.104 1.00 53.98 O
ATOM 9 C3' G A 46 50.465 166.500 36.875 1.00 53.39 C
ATOM 10 O3' G A 46 49.200 166.789 36.317 1.00 51.94 O
ATOM 11 C2' G A 46 50.287 166.079 38.331 1.00 54.19 C
ATOM 12 O2' G A 46 49.271 166.818 38.974 1.00 54.98 O
ATOM 13 C1' G A 46 49.836 164.632 38.153 1.00 55.06 C
ATOM 14 N9 G A 46 50.005 163.740 39.289 1.00 56.01 N
ATOM 15 C8 G A 46 50.787 163.924 40.399 1.00 55.75 C
ATOM 16 N7 G A 46 50.711 162.937 41.245 1.00 55.77 N
ATOM 17 C5 G A 46 49.823 162.049 40.656 1.00 56.22 C
ATOM 18 C6 G A 46 49.333 160.805 41.108 1.00 56.02 C
ATOM 19 O6 G A 46 49.564 160.227 42.173 1.00 55.55 O
ATOM 20 N1 G A 46 48.473 160.229 40.180 1.00 56.24 N
ATOM 21 C2 G A 46 48.113 160.788 38.980 1.00 56.11 C
ATOM 22 N2 G A 46 47.287 160.070 38.211 1.00 56.07 N
ATOM 23 N3 G A 46 48.537 161.961 38.565 1.00 56.17 N
ATOM 24 C4 G A 46 49.389 162.528 39.443 1.00 56.36 C
ATOM 25 P C A 47 48.965 168.192 35.619 1.00 49.77 P
ATOM 26 OP1 C A 47 47.655 168.039 34.949 1.00 49.60 O
ATOM 27 OP2 C A 47 50.178 168.523 34.814 1.00 48.39 O
ATOM 28 O5' C A 47 48.843 169.200 36.846 1.00 50.67 O
TER
ATOM 1 O3' C B 48 49.656 170.220 45.549 1.00 68.42 O
ATOM 2 P A B 49 50.922 169.245 45.464 1.00 70.30 P
ATOM 3 OP1 A B 49 51.670 169.401 46.746 1.00 70.60 O
ATOM 4 OP2 A B 49 51.618 169.489 44.168 1.00 70.42 O
ATOM 5 O5' A B 49 50.274 167.790 45.399 1.00 67.74 O
ATOM 6 C5' A B 49 49.797 167.137 46.579 1.00 62.54 C
ATOM 7 C4' A B 49 49.930 165.641 46.434 1.00 60.18 C
ATOM 8 O4' A B 49 48.843 165.164 45.592 1.00 59.98 O
ATOM 9 C3' A B 49 51.237 165.109 45.816 1.00 58.00 C
ATOM 10 O3' A B 49 51.793 164.021 46.567 1.00 55.80 O
ATOM 11 C2' A B 49 50.762 164.536 44.475 1.00 58.88 C
ATOM 12 O2' A B 49 51.518 163.406 44.111 1.00 57.80 O
ATOM 13 C1' A B 49 49.325 164.107 44.792 1.00 60.60 C
ATOM 14 N9 A B 49 48.436 163.934 43.626 1.00 62.23 N
ATOM 15 C8 A B 49 48.276 164.803 42.573 1.00 63.27 C
ATOM 16 N7 A B 49 47.441 164.381 41.652 1.00 63.18 N
ATOM 17 C5 A B 49 47.013 163.149 42.126 1.00 63.10 C
ATOM 18 C6 A B 49 46.132 162.183 41.593 1.00 63.07 C
ATOM 19 N6 A B 49 45.514 162.304 40.411 1.00 62.36 N
ATOM 20 N1 A B 49 45.911 161.067 42.323 1.00 62.95 N
ATOM 21 C2 A B 49 46.543 160.933 43.492 1.00 61.92 C
ATOM 22 N3 A B 49 47.406 161.758 44.088 1.00 62.84 N
ATOM 23 C4 A B 49 47.603 162.864 43.348 1.00 62.79 C
ATOM 24 P A B 50 53.279 164.124 47.222 1.00 53.11 P
ATOM 25 OP1 A B 50 53.668 165.537 47.486 1.00 52.59 O
ATOM 26 OP2 A B 50 54.235 163.234 46.511 1.00 54.01 O
ATOM 27 O5' A B 50 52.999 163.462 48.637 1.00 52.06 O
TER
ATOM 2 P G A 46 54.497 166.450 36.917 1.00 52.73 P
ATOM 3 OP1 G A 46 54.135 167.585 36.030 1.00 53.52 O
ATOM 4 OP2 G A 46 55.078 166.719 38.244 1.00 53.51 O
ATOM 5 O5' G A 46 53.169 165.597 37.088 1.00 52.22 O
ATOM 6 C5' G A 46 52.434 165.176 35.935 1.00 52.00 C
ATOM 7 C4' G A 46 50.971 165.224 36.216 1.00 53.16 C
ATOM 8 O4' G A 46 50.628 164.135 37.104 1.00 53.98 O
ATOM 9 C3' G A 46 50.465 166.500 36.875 1.00 53.39 C
ATOM 10 O3' G A 46 49.200 166.789 36.317 1.00 51.94 O
ATOM 11 C2' G A 46 50.287 166.079 38.331 1.00 54.19 C
ATOM 12 O2' G A 46 49.271 166.818 38.974 1.00 54.98 O
ATOM 13 C1' G A 46 49.836 164.632 38.153 1.00 55.06 C
ATOM 14 N9 G A 46 50.005 163.740 39.289 1.00 56.01 N
ATOM 15 C8 G A 46 50.787 163.924 40.399 1.00 55.75 C
ATOM 16 N7 G A 46 50.711 162.937 41.245 1.00 55.77 N
ATOM 17 C5 G A 46 49.823 162.049 40.656 1.00 56.22 C
ATOM 18 C6 G A 46 49.333 160.805 41.108 1.00 56.02 C
ATOM 19 O6 G A 46 49.564 160.227 42.173 1.00 55.55 O
ATOM 20 N1 G A 46 48.473 160.229 40.180 1.00 56.24 N
ATOM 21 C2 G A 46 48.113 160.788 38.980 1.00 56.11 C
ATOM 22 N2 G A 46 47.287 160.070 38.211 1.00 56.07 N
ATOM 23 N3 G A 46 48.537 161.961 38.565 1.00 56.17 N
ATOM 24 C4 G A 46 49.389 162.528 39.443 1.00 56.36 C
ATOM 25 P C A 47 48.965 168.192 35.619 1.00 49.77 P
ATOM 26 OP1 C A 47 47.655 168.039 34.949 1.00 49.60 O
ATOM 27 OP2 C A 47 50.178 168.523 34.814 1.00 48.39 O
ATOM 28 O5' C A 47 48.843 169.200 36.846 1.00 50.67 O
TER
ATOM 1 O3' C B 48 49.656 170.220 45.549 1.00 68.42 O
ATOM 2 P A B 49 50.922 169.245 45.464 1.00 70.30 P
ATOM 3 OP1 A B 49 51.670 169.401 46.746 1.00 70.60 O
ATOM 4 OP2 A B 49 51.618 169.489 44.168 1.00 70.42 O
ATOM 5 O5' A B 49 50.274 167.790 45.399 1.00 67.74 O
ATOM 6 C5' A B 49 49.797 167.137 46.579 1.00 62.54 C
ATOM 7 C4' A B 49 49.930 165.641 46.434 1.00 60.18 C
ATOM 8 O4' A B 49 48.843 165.164 45.592 1.00 59.98 O
ATOM 9 C3' A B 49 51.237 165.109 45.816 1.00 58.00 C
ATOM 10 O3' A B 49 51.793 164.021 46.567 1.00 55.80 O
ATOM 11 C2' A B 49 50.762 164.536 44.475 1.00 58.88 C
ATOM 12 O2' A B 49 51.518 163.406 44.111 1.00 57.80 O
ATOM 13 C1' A B 49 49.325 164.107 44.792 1.00 60.60 C
ATOM 14 N9 A B 49 48.436 163.934 43.626 1.00 62.23 N
ATOM 15 C8 A B 49 48.276 164.803 42.573 1.00 63.27 C
ATOM 16 N7 A B 49 47.441 164.381 41.652 1.00 63.18 N
ATOM 17 C5 A B 49 47.013 163.149 42.126 1.00 63.10 C
ATOM 18 C6 A B 49 46.132 162.183 41.593 1.00 63.07 C
ATOM 19 N6 A B 49 45.514 162.304 40.411 1.00 62.36 N
ATOM 20 N1 A B 49 45.911 161.067 42.323 1.00 62.95 N
ATOM 21 C2 A B 49 46.543 160.933 43.492 1.00 61.92 C
ATOM 22 N3 A B 49 47.406 161.758 44.088 1.00 62.84 N
ATOM 23 C4 A B 49 47.603 162.864 43.348 1.00 62.79 C
ATOM 24 P A B 50 53.279 164.124 47.222 1.00 53.11 P
ATOM 25 OP1 A B 50 53.668 165.537 47.486 1.00 52.59 O
ATOM 26 OP2 A B 50 54.235 163.234 46.511 1.00 54.01 O
ATOM 27 O5' A B 50 52.999 163.462 48.637 1.00 52.06 O
TER
Atoms:
OP1: (54.135,167.585,36.030)
OP2: (55.078,166.719,38.244)
C3': (50.465,166.500,36.875)
C1': (49.836,164.632,38.153)
C5': (52.434,165.176,35.935)
O6: (49.564,160.227,42.173)
O4': (50.628,164.135,37.104)
C8: (50.787,163.924,40.399)
C2: (48.113,160.788,38.980)
C6: (49.333,160.805,41.108)
C5: (49.823,162.049,40.656)
C4: (49.389,162.528,39.443)
P: (54.497,166.450,36.917)
C4': (50.971,165.224,36.216)
C2': (50.287,166.079,38.331)
O2': (49.271,166.818,38.974)
N1: (48.473,160.229,40.180)
N2: (47.287,160.070,38.211)
N3: (48.537,161.961,38.565)
N7: (50.711,162.937,41.245)
N9: (50.005,163.740,39.289)
O5': (53.169,165.597,37.088)
O3': (49.200,166.789,36.317)
OP2: (55.078,166.719,38.244)
C3': (50.465,166.500,36.875)
C1': (49.836,164.632,38.153)
C5': (52.434,165.176,35.935)
O6: (49.564,160.227,42.173)
O4': (50.628,164.135,37.104)
C8: (50.787,163.924,40.399)
C2: (48.113,160.788,38.980)
C6: (49.333,160.805,41.108)
C5: (49.823,162.049,40.656)
C4: (49.389,162.528,39.443)
P: (54.497,166.450,36.917)
C4': (50.971,165.224,36.216)
C2': (50.287,166.079,38.331)
O2': (49.271,166.818,38.974)
N1: (48.473,160.229,40.180)
N2: (47.287,160.070,38.211)
N3: (48.537,161.961,38.565)
N7: (50.711,162.937,41.245)
N9: (50.005,163.740,39.289)
O5': (53.169,165.597,37.088)
O3': (49.200,166.789,36.317)
OP1: (51.670,169.401,46.746)
OP2: (51.618,169.489,44.168)
C3': (51.237,165.109,45.816)
C1': (49.325,164.107,44.792)
C5': (49.797,167.137,46.579)
O4': (48.843,165.164,45.592)
C8: (48.276,164.803,42.573)
O2': (51.518,163.406,44.111)
C6: (46.132,162.183,41.593)
C5: (47.013,163.149,42.126)
C4: (47.603,162.864,43.348)
P: (50.922,169.245,45.464)
C4': (49.930,165.641,46.434)
C2': (50.762,164.536,44.475)
C2: (46.543,160.933,43.492)
N1: (45.911,161.067,42.323)
N3: (47.406,161.758,44.088)
N6: (45.514,162.304,40.411)
N7: (47.441,164.381,41.652)
N9: (48.436,163.934,43.626)
O5': (50.274,167.790,45.399)
O3': (51.793,164.021,46.567)
OP2: (51.618,169.489,44.168)
C3': (51.237,165.109,45.816)
C1': (49.325,164.107,44.792)
C5': (49.797,167.137,46.579)
O4': (48.843,165.164,45.592)
C8: (48.276,164.803,42.573)
O2': (51.518,163.406,44.111)
C6: (46.132,162.183,41.593)
C5: (47.013,163.149,42.126)
C4: (47.603,162.864,43.348)
P: (50.922,169.245,45.464)
C4': (49.930,165.641,46.434)
C2': (50.762,164.536,44.475)
C2: (46.543,160.933,43.492)
N1: (45.911,161.067,42.323)
N3: (47.406,161.758,44.088)
N6: (45.514,162.304,40.411)
N7: (47.441,164.381,41.652)
N9: (48.436,163.934,43.626)
O5': (50.274,167.790,45.399)
O3': (51.793,164.021,46.567)
Image (generated by PyMOL):