Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3RKF:D57:D9
Extra
PDB:
ATOM 1 O3' C A 56 11.278 -4.746 -84.317 1.00 83.29 O
ATOM 2 P G A 57 12.783 -4.384 -84.750 1.00 86.96 P
ATOM 3 OP1 G A 57 12.784 -4.207 -86.222 1.00 87.55 O
ATOM 4 OP2 G A 57 13.669 -5.415 -84.156 1.00 73.42 O
ATOM 5 O5' G A 57 13.031 -2.982 -84.036 1.00 77.28 O
ATOM 6 C5' G A 57 12.376 -1.806 -84.490 1.00 78.06 C
ATOM 7 C4' G A 57 12.897 -0.578 -83.786 1.00 76.84 C
ATOM 8 O4' G A 57 12.534 -0.625 -82.382 1.00 75.59 O
ATOM 9 C3' G A 57 14.408 -0.410 -83.770 1.00 73.82 C
ATOM 10 O3' G A 57 14.917 0.136 -84.973 1.00 73.27 O
ATOM 11 C2' G A 57 14.631 0.477 -82.553 1.00 71.84 C
ATOM 12 O2' G A 57 14.335 1.832 -82.859 1.00 75.30 O
ATOM 13 C1' G A 57 13.558 -0.048 -81.599 1.00 71.70 C
ATOM 14 N9 G A 57 14.086 -1.078 -80.685 1.00 68.53 N
ATOM 15 C8 G A 57 14.062 -2.438 -80.874 1.00 67.76 C
ATOM 16 N7 G A 57 14.604 -3.101 -79.890 1.00 70.31 N
ATOM 17 C5 G A 57 15.010 -2.122 -78.995 1.00 63.02 C
ATOM 18 C6 G A 57 15.660 -2.238 -77.739 1.00 62.87 C
ATOM 19 O6 G A 57 16.019 -3.264 -77.149 1.00 64.54 O
ATOM 20 N1 G A 57 15.888 -0.993 -77.165 1.00 62.33 N
ATOM 21 C2 G A 57 15.535 0.210 -77.723 1.00 65.27 C
ATOM 22 N2 G A 57 15.838 1.306 -77.013 1.00 62.50 N
ATOM 23 N3 G A 57 14.928 0.330 -78.892 1.00 65.49 N
ATOM 24 C4 G A 57 14.695 -0.867 -79.469 1.00 63.68 C
ATOM 25 P A A 58 16.503 0.203 -85.218 1.00 81.52 P
ATOM 26 OP1 A A 58 16.714 0.376 -86.677 1.00 80.42 O
ATOM 27 OP2 A A 58 17.098 -0.978 -84.548 1.00 77.32 O
ATOM 28 O5' A A 58 16.924 1.532 -84.448 1.00 67.80 O
TER
ATOM 1 O3' A B 8 20.517 -8.964 -77.114 1.00 56.58 O
ATOM 2 P A B 9 20.218 -7.486 -77.683 1.00 47.19 P
ATOM 3 OP1 A B 9 18.768 -7.440 -78.023 1.00 38.58 O
ATOM 4 OP2 A B 9 21.221 -7.206 -78.755 1.00 50.00 O
ATOM 5 O5' A B 9 20.504 -6.559 -76.424 1.00 51.26 O
ATOM 6 C5' A B 9 21.829 -6.342 -75.967 1.00 49.61 C
ATOM 7 C4' A B 9 22.018 -4.930 -75.486 1.00 46.68 C
ATOM 8 O4' A B 9 22.126 -4.035 -76.621 1.00 52.81 O
ATOM 9 C3' A B 9 20.877 -4.353 -74.664 1.00 50.66 C
ATOM 10 O3' A B 9 20.923 -4.757 -73.305 1.00 51.51 O
ATOM 11 C2' A B 9 21.046 -2.851 -74.861 1.00 49.08 C
ATOM 12 O2' A B 9 22.054 -2.343 -74.000 1.00 46.19 O
ATOM 13 C1' A B 9 21.563 -2.782 -76.300 1.00 52.13 C
ATOM 14 N9 A B 9 20.492 -2.481 -77.272 1.00 48.08 N
ATOM 15 C8 A B 9 19.754 -3.358 -78.028 1.00 52.47 C
ATOM 16 N7 A B 9 18.883 -2.773 -78.816 1.00 55.94 N
ATOM 17 C5 A B 9 19.066 -1.418 -78.568 1.00 54.93 C
ATOM 18 C6 A B 9 18.449 -0.263 -79.083 1.00 54.94 C
ATOM 19 N6 A B 9 17.479 -0.283 -79.999 1.00 59.77 N
ATOM 20 N1 A B 9 18.869 0.934 -78.619 1.00 52.08 N
ATOM 21 C2 A B 9 19.842 0.961 -77.700 1.00 53.24 C
ATOM 22 N3 A B 9 20.500 -0.051 -77.141 1.00 48.56 N
ATOM 23 C4 A B 9 20.059 -1.226 -77.624 1.00 49.78 C
ATOM 24 P C B 10 19.669 -5.509 -72.637 1.00 44.85 P
ATOM 25 OP1 C B 10 18.693 -5.780 -73.722 1.00 47.55 O
ATOM 26 OP2 C B 10 19.237 -4.689 -71.480 1.00 39.37 O
ATOM 27 O5' C B 10 20.309 -6.878 -72.125 1.00 47.42 O
TER
ATOM 2 P G A 57 12.783 -4.384 -84.750 1.00 86.96 P
ATOM 3 OP1 G A 57 12.784 -4.207 -86.222 1.00 87.55 O
ATOM 4 OP2 G A 57 13.669 -5.415 -84.156 1.00 73.42 O
ATOM 5 O5' G A 57 13.031 -2.982 -84.036 1.00 77.28 O
ATOM 6 C5' G A 57 12.376 -1.806 -84.490 1.00 78.06 C
ATOM 7 C4' G A 57 12.897 -0.578 -83.786 1.00 76.84 C
ATOM 8 O4' G A 57 12.534 -0.625 -82.382 1.00 75.59 O
ATOM 9 C3' G A 57 14.408 -0.410 -83.770 1.00 73.82 C
ATOM 10 O3' G A 57 14.917 0.136 -84.973 1.00 73.27 O
ATOM 11 C2' G A 57 14.631 0.477 -82.553 1.00 71.84 C
ATOM 12 O2' G A 57 14.335 1.832 -82.859 1.00 75.30 O
ATOM 13 C1' G A 57 13.558 -0.048 -81.599 1.00 71.70 C
ATOM 14 N9 G A 57 14.086 -1.078 -80.685 1.00 68.53 N
ATOM 15 C8 G A 57 14.062 -2.438 -80.874 1.00 67.76 C
ATOM 16 N7 G A 57 14.604 -3.101 -79.890 1.00 70.31 N
ATOM 17 C5 G A 57 15.010 -2.122 -78.995 1.00 63.02 C
ATOM 18 C6 G A 57 15.660 -2.238 -77.739 1.00 62.87 C
ATOM 19 O6 G A 57 16.019 -3.264 -77.149 1.00 64.54 O
ATOM 20 N1 G A 57 15.888 -0.993 -77.165 1.00 62.33 N
ATOM 21 C2 G A 57 15.535 0.210 -77.723 1.00 65.27 C
ATOM 22 N2 G A 57 15.838 1.306 -77.013 1.00 62.50 N
ATOM 23 N3 G A 57 14.928 0.330 -78.892 1.00 65.49 N
ATOM 24 C4 G A 57 14.695 -0.867 -79.469 1.00 63.68 C
ATOM 25 P A A 58 16.503 0.203 -85.218 1.00 81.52 P
ATOM 26 OP1 A A 58 16.714 0.376 -86.677 1.00 80.42 O
ATOM 27 OP2 A A 58 17.098 -0.978 -84.548 1.00 77.32 O
ATOM 28 O5' A A 58 16.924 1.532 -84.448 1.00 67.80 O
TER
ATOM 1 O3' A B 8 20.517 -8.964 -77.114 1.00 56.58 O
ATOM 2 P A B 9 20.218 -7.486 -77.683 1.00 47.19 P
ATOM 3 OP1 A B 9 18.768 -7.440 -78.023 1.00 38.58 O
ATOM 4 OP2 A B 9 21.221 -7.206 -78.755 1.00 50.00 O
ATOM 5 O5' A B 9 20.504 -6.559 -76.424 1.00 51.26 O
ATOM 6 C5' A B 9 21.829 -6.342 -75.967 1.00 49.61 C
ATOM 7 C4' A B 9 22.018 -4.930 -75.486 1.00 46.68 C
ATOM 8 O4' A B 9 22.126 -4.035 -76.621 1.00 52.81 O
ATOM 9 C3' A B 9 20.877 -4.353 -74.664 1.00 50.66 C
ATOM 10 O3' A B 9 20.923 -4.757 -73.305 1.00 51.51 O
ATOM 11 C2' A B 9 21.046 -2.851 -74.861 1.00 49.08 C
ATOM 12 O2' A B 9 22.054 -2.343 -74.000 1.00 46.19 O
ATOM 13 C1' A B 9 21.563 -2.782 -76.300 1.00 52.13 C
ATOM 14 N9 A B 9 20.492 -2.481 -77.272 1.00 48.08 N
ATOM 15 C8 A B 9 19.754 -3.358 -78.028 1.00 52.47 C
ATOM 16 N7 A B 9 18.883 -2.773 -78.816 1.00 55.94 N
ATOM 17 C5 A B 9 19.066 -1.418 -78.568 1.00 54.93 C
ATOM 18 C6 A B 9 18.449 -0.263 -79.083 1.00 54.94 C
ATOM 19 N6 A B 9 17.479 -0.283 -79.999 1.00 59.77 N
ATOM 20 N1 A B 9 18.869 0.934 -78.619 1.00 52.08 N
ATOM 21 C2 A B 9 19.842 0.961 -77.700 1.00 53.24 C
ATOM 22 N3 A B 9 20.500 -0.051 -77.141 1.00 48.56 N
ATOM 23 C4 A B 9 20.059 -1.226 -77.624 1.00 49.78 C
ATOM 24 P C B 10 19.669 -5.509 -72.637 1.00 44.85 P
ATOM 25 OP1 C B 10 18.693 -5.780 -73.722 1.00 47.55 O
ATOM 26 OP2 C B 10 19.237 -4.689 -71.480 1.00 39.37 O
ATOM 27 O5' C B 10 20.309 -6.878 -72.125 1.00 47.42 O
TER
Atoms:
OP1: (12.784,-4.207,-86.222)
OP2: (13.669,-5.415,-84.156)
C3': (14.408,-0.410,-83.770)
C1': (13.558,-0.048,-81.599)
C5': (12.376,-1.806,-84.490)
O6: (16.019,-3.264,-77.149)
O4': (12.534,-0.625,-82.382)
C8: (14.062,-2.438,-80.874)
C2: (15.535,0.210,-77.723)
C6: (15.660,-2.238,-77.739)
C5: (15.010,-2.122,-78.995)
C4: (14.695,-0.867,-79.469)
P: (12.783,-4.384,-84.750)
C4': (12.897,-0.578,-83.786)
C2': (14.631,0.477,-82.553)
O2': (14.335,1.832,-82.859)
N1: (15.888,-0.993,-77.165)
N2: (15.838,1.306,-77.013)
N3: (14.928,0.330,-78.892)
N7: (14.604,-3.101,-79.890)
N9: (14.086,-1.078,-80.685)
O5': (13.031,-2.982,-84.036)
O3': (14.917,0.136,-84.973)
OP2: (13.669,-5.415,-84.156)
C3': (14.408,-0.410,-83.770)
C1': (13.558,-0.048,-81.599)
C5': (12.376,-1.806,-84.490)
O6: (16.019,-3.264,-77.149)
O4': (12.534,-0.625,-82.382)
C8: (14.062,-2.438,-80.874)
C2: (15.535,0.210,-77.723)
C6: (15.660,-2.238,-77.739)
C5: (15.010,-2.122,-78.995)
C4: (14.695,-0.867,-79.469)
P: (12.783,-4.384,-84.750)
C4': (12.897,-0.578,-83.786)
C2': (14.631,0.477,-82.553)
O2': (14.335,1.832,-82.859)
N1: (15.888,-0.993,-77.165)
N2: (15.838,1.306,-77.013)
N3: (14.928,0.330,-78.892)
N7: (14.604,-3.101,-79.890)
N9: (14.086,-1.078,-80.685)
O5': (13.031,-2.982,-84.036)
O3': (14.917,0.136,-84.973)
OP1: (18.768,-7.440,-78.023)
OP2: (21.221,-7.206,-78.755)
C3': (20.877,-4.353,-74.664)
C1': (21.563,-2.782,-76.300)
C5': (21.829,-6.342,-75.967)
O4': (22.126,-4.035,-76.621)
C8: (19.754,-3.358,-78.028)
O2': (22.054,-2.343,-74.000)
C6: (18.449,-0.263,-79.083)
C5: (19.066,-1.418,-78.568)
C4: (20.059,-1.226,-77.624)
P: (20.218,-7.486,-77.683)
C4': (22.018,-4.930,-75.486)
C2': (21.046,-2.851,-74.861)
C2: (19.842,0.961,-77.700)
N1: (18.869,0.934,-78.619)
N3: (20.500,-0.051,-77.141)
N6: (17.479,-0.283,-79.999)
N7: (18.883,-2.773,-78.816)
N9: (20.492,-2.481,-77.272)
O5': (20.504,-6.559,-76.424)
O3': (20.923,-4.757,-73.305)
OP2: (21.221,-7.206,-78.755)
C3': (20.877,-4.353,-74.664)
C1': (21.563,-2.782,-76.300)
C5': (21.829,-6.342,-75.967)
O4': (22.126,-4.035,-76.621)
C8: (19.754,-3.358,-78.028)
O2': (22.054,-2.343,-74.000)
C6: (18.449,-0.263,-79.083)
C5: (19.066,-1.418,-78.568)
C4: (20.059,-1.226,-77.624)
P: (20.218,-7.486,-77.683)
C4': (22.018,-4.930,-75.486)
C2': (21.046,-2.851,-74.861)
C2: (19.842,0.961,-77.700)
N1: (18.869,0.934,-78.619)
N3: (20.500,-0.051,-77.141)
N6: (17.479,-0.283,-79.999)
N7: (18.883,-2.773,-78.816)
N9: (20.492,-2.481,-77.272)
O5': (20.504,-6.559,-76.424)
O3': (20.923,-4.757,-73.305)
Image (generated by PyMOL):