Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:046:049
Extra
PDB:
ATOM 1 O3' U A 45 55.350 165.681 36.059 1.00 46.86 O
ATOM 2 P G A 46 54.339 166.629 36.878 1.00 48.10 P
ATOM 3 OP1 G A 46 54.048 167.797 36.015 1.00 49.23 O
ATOM 4 OP2 G A 46 54.848 166.849 38.250 1.00 49.23 O
ATOM 5 O5' G A 46 53.011 165.762 36.974 1.00 47.90 O
ATOM 6 C5' G A 46 52.317 165.379 35.787 1.00 45.83 C
ATOM 7 C4' G A 46 50.836 165.419 36.019 1.00 46.23 C
ATOM 8 O4' G A 46 50.463 164.302 36.864 1.00 48.31 O
ATOM 9 C3' G A 46 50.291 166.670 36.702 1.00 47.09 C
ATOM 10 O3' G A 46 49.014 166.964 36.144 1.00 48.90 O
ATOM 11 C2' G A 46 50.129 166.216 38.150 1.00 45.79 C
ATOM 12 O2' G A 46 49.117 166.919 38.837 1.00 45.07 O
ATOM 13 C1' G A 46 49.689 164.773 37.944 1.00 48.94 C
ATOM 14 N9 G A 46 49.837 163.846 39.065 1.00 51.85 N
ATOM 15 C8 G A 46 50.547 164.022 40.233 1.00 52.41 C
ATOM 16 N7 G A 46 50.472 162.994 41.037 1.00 51.87 N
ATOM 17 C5 G A 46 49.670 162.086 40.359 1.00 52.83 C
ATOM 18 C6 G A 46 49.239 160.787 40.725 1.00 52.41 C
ATOM 19 O6 G A 46 49.494 160.154 41.754 1.00 52.87 O
ATOM 20 N1 G A 46 48.433 160.219 39.741 1.00 52.69 N
ATOM 21 C2 G A 46 48.089 160.820 38.557 1.00 51.72 C
ATOM 22 N2 G A 46 47.303 160.113 37.739 1.00 51.60 N
ATOM 23 N3 G A 46 48.487 162.024 38.202 1.00 51.72 N
ATOM 24 C4 G A 46 49.268 162.597 39.143 1.00 52.34 C
ATOM 25 P C A 47 48.772 168.370 35.407 1.00 48.14 P
ATOM 26 OP1 C A 47 47.411 168.365 34.808 1.00 50.00 O
ATOM 27 OP2 C A 47 49.957 168.619 34.542 1.00 46.67 O
ATOM 28 O5' C A 47 48.756 169.414 36.606 1.00 48.17 O
TER
ATOM 1 O3' C B 48 49.503 170.174 45.338 1.00 59.73 O
ATOM 2 P A B 49 50.811 169.254 45.186 1.00 63.52 P
ATOM 3 OP1 A B 49 51.591 169.412 46.449 1.00 63.57 O
ATOM 4 OP2 A B 49 51.461 169.533 43.874 1.00 62.06 O
ATOM 5 O5' A B 49 50.228 167.774 45.119 1.00 61.35 O
ATOM 6 C5' A B 49 49.685 167.149 46.289 1.00 56.26 C
ATOM 7 C4' A B 49 49.838 165.654 46.195 1.00 54.55 C
ATOM 8 O4' A B 49 48.751 165.102 45.403 1.00 53.53 O
ATOM 9 C3' A B 49 51.140 165.149 45.567 1.00 51.79 C
ATOM 10 O3' A B 49 51.654 164.067 46.324 1.00 50.94 O
ATOM 11 C2' A B 49 50.681 164.633 44.204 1.00 51.19 C
ATOM 12 O2' A B 49 51.473 163.562 43.736 1.00 49.40 O
ATOM 13 C1' A B 49 49.273 164.138 44.523 1.00 51.87 C
ATOM 14 N9 A B 49 48.382 164.032 43.368 1.00 53.74 N
ATOM 15 C8 A B 49 48.253 164.896 42.310 1.00 53.65 C
ATOM 16 N7 A B 49 47.386 164.503 41.409 1.00 55.29 N
ATOM 17 C5 A B 49 46.902 163.303 41.911 1.00 56.01 C
ATOM 18 C6 A B 49 45.957 162.382 41.420 1.00 56.30 C
ATOM 19 N6 A B 49 45.315 162.526 40.258 1.00 55.49 N
ATOM 20 N1 A B 49 45.695 161.289 42.171 1.00 56.03 N
ATOM 21 C2 A B 49 46.350 161.136 43.328 1.00 55.12 C
ATOM 22 N3 A B 49 47.265 161.923 43.890 1.00 55.30 N
ATOM 23 C4 A B 49 47.499 163.004 43.123 1.00 55.75 C
ATOM 24 P A B 50 53.052 164.227 47.103 1.00 49.99 P
ATOM 25 OP1 A B 50 53.253 165.647 47.481 1.00 49.26 O
ATOM 26 OP2 A B 50 54.110 163.512 46.353 1.00 50.24 O
ATOM 27 O5' A B 50 52.763 163.436 48.445 1.00 49.95 O
TER
ATOM 2 P G A 46 54.339 166.629 36.878 1.00 48.10 P
ATOM 3 OP1 G A 46 54.048 167.797 36.015 1.00 49.23 O
ATOM 4 OP2 G A 46 54.848 166.849 38.250 1.00 49.23 O
ATOM 5 O5' G A 46 53.011 165.762 36.974 1.00 47.90 O
ATOM 6 C5' G A 46 52.317 165.379 35.787 1.00 45.83 C
ATOM 7 C4' G A 46 50.836 165.419 36.019 1.00 46.23 C
ATOM 8 O4' G A 46 50.463 164.302 36.864 1.00 48.31 O
ATOM 9 C3' G A 46 50.291 166.670 36.702 1.00 47.09 C
ATOM 10 O3' G A 46 49.014 166.964 36.144 1.00 48.90 O
ATOM 11 C2' G A 46 50.129 166.216 38.150 1.00 45.79 C
ATOM 12 O2' G A 46 49.117 166.919 38.837 1.00 45.07 O
ATOM 13 C1' G A 46 49.689 164.773 37.944 1.00 48.94 C
ATOM 14 N9 G A 46 49.837 163.846 39.065 1.00 51.85 N
ATOM 15 C8 G A 46 50.547 164.022 40.233 1.00 52.41 C
ATOM 16 N7 G A 46 50.472 162.994 41.037 1.00 51.87 N
ATOM 17 C5 G A 46 49.670 162.086 40.359 1.00 52.83 C
ATOM 18 C6 G A 46 49.239 160.787 40.725 1.00 52.41 C
ATOM 19 O6 G A 46 49.494 160.154 41.754 1.00 52.87 O
ATOM 20 N1 G A 46 48.433 160.219 39.741 1.00 52.69 N
ATOM 21 C2 G A 46 48.089 160.820 38.557 1.00 51.72 C
ATOM 22 N2 G A 46 47.303 160.113 37.739 1.00 51.60 N
ATOM 23 N3 G A 46 48.487 162.024 38.202 1.00 51.72 N
ATOM 24 C4 G A 46 49.268 162.597 39.143 1.00 52.34 C
ATOM 25 P C A 47 48.772 168.370 35.407 1.00 48.14 P
ATOM 26 OP1 C A 47 47.411 168.365 34.808 1.00 50.00 O
ATOM 27 OP2 C A 47 49.957 168.619 34.542 1.00 46.67 O
ATOM 28 O5' C A 47 48.756 169.414 36.606 1.00 48.17 O
TER
ATOM 1 O3' C B 48 49.503 170.174 45.338 1.00 59.73 O
ATOM 2 P A B 49 50.811 169.254 45.186 1.00 63.52 P
ATOM 3 OP1 A B 49 51.591 169.412 46.449 1.00 63.57 O
ATOM 4 OP2 A B 49 51.461 169.533 43.874 1.00 62.06 O
ATOM 5 O5' A B 49 50.228 167.774 45.119 1.00 61.35 O
ATOM 6 C5' A B 49 49.685 167.149 46.289 1.00 56.26 C
ATOM 7 C4' A B 49 49.838 165.654 46.195 1.00 54.55 C
ATOM 8 O4' A B 49 48.751 165.102 45.403 1.00 53.53 O
ATOM 9 C3' A B 49 51.140 165.149 45.567 1.00 51.79 C
ATOM 10 O3' A B 49 51.654 164.067 46.324 1.00 50.94 O
ATOM 11 C2' A B 49 50.681 164.633 44.204 1.00 51.19 C
ATOM 12 O2' A B 49 51.473 163.562 43.736 1.00 49.40 O
ATOM 13 C1' A B 49 49.273 164.138 44.523 1.00 51.87 C
ATOM 14 N9 A B 49 48.382 164.032 43.368 1.00 53.74 N
ATOM 15 C8 A B 49 48.253 164.896 42.310 1.00 53.65 C
ATOM 16 N7 A B 49 47.386 164.503 41.409 1.00 55.29 N
ATOM 17 C5 A B 49 46.902 163.303 41.911 1.00 56.01 C
ATOM 18 C6 A B 49 45.957 162.382 41.420 1.00 56.30 C
ATOM 19 N6 A B 49 45.315 162.526 40.258 1.00 55.49 N
ATOM 20 N1 A B 49 45.695 161.289 42.171 1.00 56.03 N
ATOM 21 C2 A B 49 46.350 161.136 43.328 1.00 55.12 C
ATOM 22 N3 A B 49 47.265 161.923 43.890 1.00 55.30 N
ATOM 23 C4 A B 49 47.499 163.004 43.123 1.00 55.75 C
ATOM 24 P A B 50 53.052 164.227 47.103 1.00 49.99 P
ATOM 25 OP1 A B 50 53.253 165.647 47.481 1.00 49.26 O
ATOM 26 OP2 A B 50 54.110 163.512 46.353 1.00 50.24 O
ATOM 27 O5' A B 50 52.763 163.436 48.445 1.00 49.95 O
TER
Atoms:
OP1: (54.048,167.797,36.015)
OP2: (54.848,166.849,38.250)
C3': (50.291,166.670,36.702)
C1': (49.689,164.773,37.944)
C5': (52.317,165.379,35.787)
O6: (49.494,160.154,41.754)
O4': (50.463,164.302,36.864)
C8: (50.547,164.022,40.233)
C2: (48.089,160.820,38.557)
C6: (49.239,160.787,40.725)
C5: (49.670,162.086,40.359)
C4: (49.268,162.597,39.143)
P: (54.339,166.629,36.878)
C4': (50.836,165.419,36.019)
C2': (50.129,166.216,38.150)
O2': (49.117,166.919,38.837)
N1: (48.433,160.219,39.741)
N2: (47.303,160.113,37.739)
N3: (48.487,162.024,38.202)
N7: (50.472,162.994,41.037)
N9: (49.837,163.846,39.065)
O5': (53.011,165.762,36.974)
O3': (49.014,166.964,36.144)
OP2: (54.848,166.849,38.250)
C3': (50.291,166.670,36.702)
C1': (49.689,164.773,37.944)
C5': (52.317,165.379,35.787)
O6: (49.494,160.154,41.754)
O4': (50.463,164.302,36.864)
C8: (50.547,164.022,40.233)
C2: (48.089,160.820,38.557)
C6: (49.239,160.787,40.725)
C5: (49.670,162.086,40.359)
C4: (49.268,162.597,39.143)
P: (54.339,166.629,36.878)
C4': (50.836,165.419,36.019)
C2': (50.129,166.216,38.150)
O2': (49.117,166.919,38.837)
N1: (48.433,160.219,39.741)
N2: (47.303,160.113,37.739)
N3: (48.487,162.024,38.202)
N7: (50.472,162.994,41.037)
N9: (49.837,163.846,39.065)
O5': (53.011,165.762,36.974)
O3': (49.014,166.964,36.144)
OP1: (51.591,169.412,46.449)
OP2: (51.461,169.533,43.874)
C3': (51.140,165.149,45.567)
C1': (49.273,164.138,44.523)
C5': (49.685,167.149,46.289)
O4': (48.751,165.102,45.403)
C8: (48.253,164.896,42.310)
O2': (51.473,163.562,43.736)
C6: (45.957,162.382,41.420)
C5: (46.902,163.303,41.911)
C4: (47.499,163.004,43.123)
P: (50.811,169.254,45.186)
C4': (49.838,165.654,46.195)
C2': (50.681,164.633,44.204)
C2: (46.350,161.136,43.328)
N1: (45.695,161.289,42.171)
N3: (47.265,161.923,43.890)
N6: (45.315,162.526,40.258)
N7: (47.386,164.503,41.409)
N9: (48.382,164.032,43.368)
O5': (50.228,167.774,45.119)
O3': (51.654,164.067,46.324)
OP2: (51.461,169.533,43.874)
C3': (51.140,165.149,45.567)
C1': (49.273,164.138,44.523)
C5': (49.685,167.149,46.289)
O4': (48.751,165.102,45.403)
C8: (48.253,164.896,42.310)
O2': (51.473,163.562,43.736)
C6: (45.957,162.382,41.420)
C5: (46.902,163.303,41.911)
C4: (47.499,163.004,43.123)
P: (50.811,169.254,45.186)
C4': (49.838,165.654,46.195)
C2': (50.681,164.633,44.204)
C2: (46.350,161.136,43.328)
N1: (45.695,161.289,42.171)
N3: (47.265,161.923,43.890)
N6: (45.315,162.526,40.258)
N7: (47.386,164.503,41.409)
N9: (48.382,164.032,43.368)
O5': (50.228,167.774,45.119)
O3': (51.654,164.067,46.324)
Image (generated by PyMOL):