Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1513:1467
Extra
PDB:
ATOM 1 O3' G A 512 77.276 -22.881 -24.307 1.00 89.39 O
ATOM 2 P A A 513 77.586 -23.035 -22.733 1.00 79.08 P
ATOM 3 OP1 A A 513 78.807 -23.892 -22.600 1.00 79.25 O
ATOM 4 OP2 A A 513 76.325 -23.476 -22.069 1.00 78.66 O
ATOM 5 O5' A A 513 77.922 -21.545 -22.306 1.00 78.70 O
ATOM 6 C5' A A 513 77.278 -20.952 -21.195 1.00 77.97 C
ATOM 7 C4' A A 513 77.290 -19.461 -21.318 1.00 77.87 C
ATOM 8 O4' A A 513 76.229 -19.025 -22.217 1.00 78.20 O
ATOM 9 C3' A A 513 77.043 -18.690 -20.042 1.00 77.09 C
ATOM 10 O3' A A 513 78.197 -18.591 -19.240 1.00 76.78 O
ATOM 11 C2' A A 513 76.564 -17.353 -20.576 1.00 77.19 C
ATOM 12 O2' A A 513 77.666 -16.592 -21.057 1.00 77.48 O
ATOM 13 C1' A A 513 75.696 -17.803 -21.767 1.00 77.78 C
ATOM 14 N9 A A 513 74.306 -18.050 -21.346 1.00 77.46 N
ATOM 15 C8 A A 513 73.716 -19.263 -21.137 1.00 77.43 C
ATOM 16 N7 A A 513 72.480 -19.192 -20.707 1.00 77.10 N
ATOM 17 C5 A A 513 72.244 -17.834 -20.597 1.00 76.89 C
ATOM 18 C6 A A 513 71.123 -17.081 -20.182 1.00 76.52 C
ATOM 19 N6 A A 513 69.953 -17.610 -19.777 1.00 76.27 N
ATOM 20 N1 A A 513 71.228 -15.734 -20.196 1.00 76.41 N
ATOM 21 C2 A A 513 72.373 -15.199 -20.592 1.00 76.66 C
ATOM 22 N3 A A 513 73.481 -15.802 -21.002 1.00 77.01 N
ATOM 23 C4 A A 513 73.360 -17.130 -20.984 1.00 77.11 C
ATOM 24 P A A 514 78.058 -18.524 -17.646 1.00 71.34 P
ATOM 25 OP1 A A 514 79.438 -18.491 -17.091 1.00 71.21 O
ATOM 26 OP2 A A 514 77.156 -19.627 -17.238 1.00 71.16 O
ATOM 27 O5' A A 514 77.333 -17.119 -17.396 1.00 71.01 O
TER
ATOM 1 O3' A B 466 62.471 -20.112 -17.792 1.00 56.74 O
ATOM 2 P A B 467 62.730 -19.579 -19.274 1.00 69.29 P
ATOM 3 OP1 A B 467 61.677 -20.143 -20.125 1.00 69.77 O
ATOM 4 OP2 A B 467 64.136 -19.870 -19.594 1.00 69.54 O
ATOM 5 O5' A B 467 62.505 -18.015 -19.126 1.00 69.05 O
ATOM 6 C5' A B 467 63.245 -17.067 -19.889 1.00 69.39 C
ATOM 7 C4' A B 467 63.145 -15.701 -19.253 1.00 68.94 C
ATOM 8 O4' A B 467 64.000 -15.631 -18.068 1.00 68.35 O
ATOM 9 C3' A B 467 63.580 -14.508 -20.081 1.00 69.30 C
ATOM 10 O3' A B 467 62.602 -14.117 -21.023 1.00 69.74 O
ATOM 11 C2' A B 467 63.792 -13.470 -18.982 1.00 68.65 C
ATOM 12 O2' A B 467 62.547 -13.043 -18.460 1.00 68.32 O
ATOM 13 C1' A B 467 64.493 -14.316 -17.914 1.00 68.19 C
ATOM 14 N9 A B 467 65.928 -14.345 -18.168 1.00 68.38 N
ATOM 15 C8 A B 467 66.659 -15.417 -18.587 1.00 68.71 C
ATOM 16 N7 A B 467 67.908 -15.113 -18.849 1.00 68.89 N
ATOM 17 C5 A B 467 67.965 -13.736 -18.619 1.00 68.67 C
ATOM 18 C6 A B 467 69.016 -12.807 -18.720 1.00 68.72 C
ATOM 19 N6 A B 467 70.238 -13.181 -19.097 1.00 69.02 N
ATOM 20 N1 A B 467 68.764 -11.508 -18.422 1.00 68.48 N
ATOM 21 C2 A B 467 67.517 -11.196 -18.034 1.00 68.19 C
ATOM 22 N3 A B 467 66.443 -11.972 -17.890 1.00 68.11 N
ATOM 23 C4 A B 467 66.740 -13.246 -18.208 1.00 68.37 C
ATOM 24 P U B 468 62.910 -14.039 -22.608 1.00 62.35 P
ATOM 25 OP1 U B 468 61.608 -13.664 -23.268 1.00 62.65 O
ATOM 26 OP2 U B 468 63.582 -15.299 -23.000 1.00 62.68 O
ATOM 27 O5' U B 468 63.928 -12.835 -22.725 1.00 62.36 O
TER
ATOM 2 P A A 513 77.586 -23.035 -22.733 1.00 79.08 P
ATOM 3 OP1 A A 513 78.807 -23.892 -22.600 1.00 79.25 O
ATOM 4 OP2 A A 513 76.325 -23.476 -22.069 1.00 78.66 O
ATOM 5 O5' A A 513 77.922 -21.545 -22.306 1.00 78.70 O
ATOM 6 C5' A A 513 77.278 -20.952 -21.195 1.00 77.97 C
ATOM 7 C4' A A 513 77.290 -19.461 -21.318 1.00 77.87 C
ATOM 8 O4' A A 513 76.229 -19.025 -22.217 1.00 78.20 O
ATOM 9 C3' A A 513 77.043 -18.690 -20.042 1.00 77.09 C
ATOM 10 O3' A A 513 78.197 -18.591 -19.240 1.00 76.78 O
ATOM 11 C2' A A 513 76.564 -17.353 -20.576 1.00 77.19 C
ATOM 12 O2' A A 513 77.666 -16.592 -21.057 1.00 77.48 O
ATOM 13 C1' A A 513 75.696 -17.803 -21.767 1.00 77.78 C
ATOM 14 N9 A A 513 74.306 -18.050 -21.346 1.00 77.46 N
ATOM 15 C8 A A 513 73.716 -19.263 -21.137 1.00 77.43 C
ATOM 16 N7 A A 513 72.480 -19.192 -20.707 1.00 77.10 N
ATOM 17 C5 A A 513 72.244 -17.834 -20.597 1.00 76.89 C
ATOM 18 C6 A A 513 71.123 -17.081 -20.182 1.00 76.52 C
ATOM 19 N6 A A 513 69.953 -17.610 -19.777 1.00 76.27 N
ATOM 20 N1 A A 513 71.228 -15.734 -20.196 1.00 76.41 N
ATOM 21 C2 A A 513 72.373 -15.199 -20.592 1.00 76.66 C
ATOM 22 N3 A A 513 73.481 -15.802 -21.002 1.00 77.01 N
ATOM 23 C4 A A 513 73.360 -17.130 -20.984 1.00 77.11 C
ATOM 24 P A A 514 78.058 -18.524 -17.646 1.00 71.34 P
ATOM 25 OP1 A A 514 79.438 -18.491 -17.091 1.00 71.21 O
ATOM 26 OP2 A A 514 77.156 -19.627 -17.238 1.00 71.16 O
ATOM 27 O5' A A 514 77.333 -17.119 -17.396 1.00 71.01 O
TER
ATOM 1 O3' A B 466 62.471 -20.112 -17.792 1.00 56.74 O
ATOM 2 P A B 467 62.730 -19.579 -19.274 1.00 69.29 P
ATOM 3 OP1 A B 467 61.677 -20.143 -20.125 1.00 69.77 O
ATOM 4 OP2 A B 467 64.136 -19.870 -19.594 1.00 69.54 O
ATOM 5 O5' A B 467 62.505 -18.015 -19.126 1.00 69.05 O
ATOM 6 C5' A B 467 63.245 -17.067 -19.889 1.00 69.39 C
ATOM 7 C4' A B 467 63.145 -15.701 -19.253 1.00 68.94 C
ATOM 8 O4' A B 467 64.000 -15.631 -18.068 1.00 68.35 O
ATOM 9 C3' A B 467 63.580 -14.508 -20.081 1.00 69.30 C
ATOM 10 O3' A B 467 62.602 -14.117 -21.023 1.00 69.74 O
ATOM 11 C2' A B 467 63.792 -13.470 -18.982 1.00 68.65 C
ATOM 12 O2' A B 467 62.547 -13.043 -18.460 1.00 68.32 O
ATOM 13 C1' A B 467 64.493 -14.316 -17.914 1.00 68.19 C
ATOM 14 N9 A B 467 65.928 -14.345 -18.168 1.00 68.38 N
ATOM 15 C8 A B 467 66.659 -15.417 -18.587 1.00 68.71 C
ATOM 16 N7 A B 467 67.908 -15.113 -18.849 1.00 68.89 N
ATOM 17 C5 A B 467 67.965 -13.736 -18.619 1.00 68.67 C
ATOM 18 C6 A B 467 69.016 -12.807 -18.720 1.00 68.72 C
ATOM 19 N6 A B 467 70.238 -13.181 -19.097 1.00 69.02 N
ATOM 20 N1 A B 467 68.764 -11.508 -18.422 1.00 68.48 N
ATOM 21 C2 A B 467 67.517 -11.196 -18.034 1.00 68.19 C
ATOM 22 N3 A B 467 66.443 -11.972 -17.890 1.00 68.11 N
ATOM 23 C4 A B 467 66.740 -13.246 -18.208 1.00 68.37 C
ATOM 24 P U B 468 62.910 -14.039 -22.608 1.00 62.35 P
ATOM 25 OP1 U B 468 61.608 -13.664 -23.268 1.00 62.65 O
ATOM 26 OP2 U B 468 63.582 -15.299 -23.000 1.00 62.68 O
ATOM 27 O5' U B 468 63.928 -12.835 -22.725 1.00 62.36 O
TER
Atoms:
OP1: (78.807,-23.892,-22.600)
OP2: (76.325,-23.476,-22.069)
C3': (77.043,-18.690,-20.042)
C1': (75.696,-17.803,-21.767)
C5': (77.278,-20.952,-21.195)
O4': (76.229,-19.025,-22.217)
C8: (73.716,-19.263,-21.137)
O2': (77.666,-16.592,-21.057)
C6: (71.123,-17.081,-20.182)
C5: (72.244,-17.834,-20.597)
C4: (73.360,-17.130,-20.984)
P: (77.586,-23.035,-22.733)
C4': (77.290,-19.461,-21.318)
C2': (76.564,-17.353,-20.576)
C2: (72.373,-15.199,-20.592)
N1: (71.228,-15.734,-20.196)
N3: (73.481,-15.802,-21.002)
N6: (69.953,-17.610,-19.777)
N7: (72.480,-19.192,-20.707)
N9: (74.306,-18.050,-21.346)
O5': (77.922,-21.545,-22.306)
O3': (78.197,-18.591,-19.240)
OP2: (76.325,-23.476,-22.069)
C3': (77.043,-18.690,-20.042)
C1': (75.696,-17.803,-21.767)
C5': (77.278,-20.952,-21.195)
O4': (76.229,-19.025,-22.217)
C8: (73.716,-19.263,-21.137)
O2': (77.666,-16.592,-21.057)
C6: (71.123,-17.081,-20.182)
C5: (72.244,-17.834,-20.597)
C4: (73.360,-17.130,-20.984)
P: (77.586,-23.035,-22.733)
C4': (77.290,-19.461,-21.318)
C2': (76.564,-17.353,-20.576)
C2: (72.373,-15.199,-20.592)
N1: (71.228,-15.734,-20.196)
N3: (73.481,-15.802,-21.002)
N6: (69.953,-17.610,-19.777)
N7: (72.480,-19.192,-20.707)
N9: (74.306,-18.050,-21.346)
O5': (77.922,-21.545,-22.306)
O3': (78.197,-18.591,-19.240)
OP1: (61.677,-20.143,-20.125)
OP2: (64.136,-19.870,-19.594)
C3': (63.580,-14.508,-20.081)
C1': (64.493,-14.316,-17.914)
C5': (63.245,-17.067,-19.889)
O4': (64.000,-15.631,-18.068)
C8: (66.659,-15.417,-18.587)
O2': (62.547,-13.043,-18.460)
C6: (69.016,-12.807,-18.720)
C5: (67.965,-13.736,-18.619)
C4: (66.740,-13.246,-18.208)
P: (62.730,-19.579,-19.274)
C4': (63.145,-15.701,-19.253)
C2': (63.792,-13.470,-18.982)
C2: (67.517,-11.196,-18.034)
N1: (68.764,-11.508,-18.422)
N3: (66.443,-11.972,-17.890)
N6: (70.238,-13.181,-19.097)
N7: (67.908,-15.113,-18.849)
N9: (65.928,-14.345,-18.168)
O5': (62.505,-18.015,-19.126)
O3': (62.602,-14.117,-21.023)
OP2: (64.136,-19.870,-19.594)
C3': (63.580,-14.508,-20.081)
C1': (64.493,-14.316,-17.914)
C5': (63.245,-17.067,-19.889)
O4': (64.000,-15.631,-18.068)
C8: (66.659,-15.417,-18.587)
O2': (62.547,-13.043,-18.460)
C6: (69.016,-12.807,-18.720)
C5: (67.965,-13.736,-18.619)
C4: (66.740,-13.246,-18.208)
P: (62.730,-19.579,-19.274)
C4': (63.145,-15.701,-19.253)
C2': (63.792,-13.470,-18.982)
C2: (67.517,-11.196,-18.034)
N1: (68.764,-11.508,-18.422)
N3: (66.443,-11.972,-17.890)
N6: (70.238,-13.181,-19.097)
N7: (67.908,-15.113,-18.849)
N9: (65.928,-14.345,-18.168)
O5': (62.505,-18.015,-19.126)
O3': (62.602,-14.117,-21.023)
Image (generated by PyMOL):