Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
420D:B5:B4
Extra
PDB:
ATOM 1 O3' A A 4 8.336 25.699 -0.578 1.00 32.45 O
ATOM 2 P G A 5 7.938 25.255 0.912 1.00 30.73 P
ATOM 3 OP1 G A 5 8.042 26.469 1.755 1.00 38.64 O
ATOM 4 OP2 G A 5 8.693 24.041 1.296 1.00 31.78 O
ATOM 5 O5' G A 5 6.404 24.868 0.769 1.00 31.92 O
ATOM 6 C5' G A 5 5.812 23.859 1.589 1.00 24.99 C
ATOM 7 C4' G A 5 4.413 23.580 1.109 1.00 25.89 C
ATOM 8 O4' G A 5 4.472 23.002 -0.223 1.00 28.15 O
ATOM 9 C3' G A 5 3.639 22.557 1.914 1.00 29.27 C
ATOM 10 O3' G A 5 3.050 23.175 3.059 1.00 33.23 O
ATOM 11 C2' G A 5 2.593 22.108 0.905 1.00 28.01 C
ATOM 12 O2' G A 5 1.526 23.030 0.809 1.00 33.39 O
ATOM 13 C1' G A 5 3.427 22.057 -0.383 1.00 29.38 C
ATOM 14 N9 G A 5 4.015 20.732 -0.597 1.00 31.67 N
ATOM 15 C8 G A 5 3.326 19.586 -0.901 1.00 29.89 C
ATOM 16 N7 G A 5 4.092 18.534 -0.996 1.00 27.02 N
ATOM 17 C5 G A 5 5.370 19.012 -0.743 1.00 29.50 C
ATOM 18 C6 G A 5 6.611 18.322 -0.680 1.00 33.65 C
ATOM 19 O6 G A 5 6.823 17.115 -0.829 1.00 37.13 O
ATOM 20 N1 G A 5 7.671 19.183 -0.399 1.00 32.40 N
ATOM 21 C2 G A 5 7.555 20.532 -0.193 1.00 29.53 C
ATOM 22 N2 G A 5 8.707 21.178 0.074 1.00 27.16 N
ATOM 23 N3 G A 5 6.398 21.194 -0.244 1.00 31.16 N
ATOM 24 C4 G A 5 5.353 20.375 -0.516 1.00 32.08 C
ATOM 25 P U A 6 3.083 22.419 4.474 1.00 30.69 P
ATOM 26 OP1 U A 6 2.501 23.314 5.500 1.00 39.39 O
ATOM 27 OP2 U A 6 4.442 21.860 4.671 1.00 31.13 O
ATOM 28 O5' U A 6 2.082 21.203 4.271 1.00 30.17 O
TER
ATOM 1 O3' G B 3 13.230 23.604 -3.448 1.00 41.88 O
ATOM 2 P A B 4 12.454 23.443 -2.053 1.00 35.10 P
ATOM 3 OP1 A B 4 12.985 24.480 -1.139 1.00 46.30 O
ATOM 4 OP2 A B 4 12.461 22.021 -1.629 1.00 35.84 O
ATOM 5 O5' A B 4 10.957 23.819 -2.422 1.00 35.77 O
ATOM 6 C5' A B 4 10.606 25.158 -2.774 1.00 28.32 C
ATOM 7 C4' A B 4 9.118 25.270 -2.847 1.00 31.09 C
ATOM 8 O4' A B 4 8.655 24.427 -3.928 1.00 35.32 O
ATOM 9 C3' A B 4 8.408 24.720 -1.622 1.00 33.10 C
ATOM 10 O3' A B 4 8.336 25.699 -0.578 1.00 32.45 O
ATOM 11 C2' A B 4 7.040 24.362 -2.187 1.00 29.09 C
ATOM 12 O2' A B 4 6.178 25.478 -2.317 1.00 29.33 O
ATOM 13 C1' A B 4 7.424 23.831 -3.571 1.00 31.43 C
ATOM 14 N9 A B 4 7.591 22.380 -3.604 1.00 27.48 N
ATOM 15 C8 A B 4 8.725 21.638 -3.397 1.00 20.24 C
ATOM 16 N7 A B 4 8.530 20.345 -3.467 1.00 22.74 N
ATOM 17 C5 A B 4 7.174 20.229 -3.749 1.00 24.71 C
ATOM 18 C6 A B 4 6.337 19.118 -3.946 1.00 21.28 C
ATOM 19 N6 A B 4 6.749 17.855 -3.884 1.00 19.69 N
ATOM 20 N1 A B 4 5.037 19.356 -4.214 1.00 23.85 N
ATOM 21 C2 A B 4 4.616 20.619 -4.276 1.00 20.73 C
ATOM 22 N3 A B 4 5.301 21.743 -4.107 1.00 23.42 N
ATOM 23 C4 A B 4 6.589 21.475 -3.843 1.00 25.07 C
ATOM 24 P G B 5 7.938 25.255 0.912 1.00 30.73 P
ATOM 25 OP1 G B 5 8.042 26.469 1.755 1.00 38.64 O
ATOM 26 OP2 G B 5 8.693 24.041 1.296 1.00 31.78 O
ATOM 27 O5' G B 5 6.404 24.868 0.769 1.00 31.92 O
TER
ATOM 2 P G A 5 7.938 25.255 0.912 1.00 30.73 P
ATOM 3 OP1 G A 5 8.042 26.469 1.755 1.00 38.64 O
ATOM 4 OP2 G A 5 8.693 24.041 1.296 1.00 31.78 O
ATOM 5 O5' G A 5 6.404 24.868 0.769 1.00 31.92 O
ATOM 6 C5' G A 5 5.812 23.859 1.589 1.00 24.99 C
ATOM 7 C4' G A 5 4.413 23.580 1.109 1.00 25.89 C
ATOM 8 O4' G A 5 4.472 23.002 -0.223 1.00 28.15 O
ATOM 9 C3' G A 5 3.639 22.557 1.914 1.00 29.27 C
ATOM 10 O3' G A 5 3.050 23.175 3.059 1.00 33.23 O
ATOM 11 C2' G A 5 2.593 22.108 0.905 1.00 28.01 C
ATOM 12 O2' G A 5 1.526 23.030 0.809 1.00 33.39 O
ATOM 13 C1' G A 5 3.427 22.057 -0.383 1.00 29.38 C
ATOM 14 N9 G A 5 4.015 20.732 -0.597 1.00 31.67 N
ATOM 15 C8 G A 5 3.326 19.586 -0.901 1.00 29.89 C
ATOM 16 N7 G A 5 4.092 18.534 -0.996 1.00 27.02 N
ATOM 17 C5 G A 5 5.370 19.012 -0.743 1.00 29.50 C
ATOM 18 C6 G A 5 6.611 18.322 -0.680 1.00 33.65 C
ATOM 19 O6 G A 5 6.823 17.115 -0.829 1.00 37.13 O
ATOM 20 N1 G A 5 7.671 19.183 -0.399 1.00 32.40 N
ATOM 21 C2 G A 5 7.555 20.532 -0.193 1.00 29.53 C
ATOM 22 N2 G A 5 8.707 21.178 0.074 1.00 27.16 N
ATOM 23 N3 G A 5 6.398 21.194 -0.244 1.00 31.16 N
ATOM 24 C4 G A 5 5.353 20.375 -0.516 1.00 32.08 C
ATOM 25 P U A 6 3.083 22.419 4.474 1.00 30.69 P
ATOM 26 OP1 U A 6 2.501 23.314 5.500 1.00 39.39 O
ATOM 27 OP2 U A 6 4.442 21.860 4.671 1.00 31.13 O
ATOM 28 O5' U A 6 2.082 21.203 4.271 1.00 30.17 O
TER
ATOM 1 O3' G B 3 13.230 23.604 -3.448 1.00 41.88 O
ATOM 2 P A B 4 12.454 23.443 -2.053 1.00 35.10 P
ATOM 3 OP1 A B 4 12.985 24.480 -1.139 1.00 46.30 O
ATOM 4 OP2 A B 4 12.461 22.021 -1.629 1.00 35.84 O
ATOM 5 O5' A B 4 10.957 23.819 -2.422 1.00 35.77 O
ATOM 6 C5' A B 4 10.606 25.158 -2.774 1.00 28.32 C
ATOM 7 C4' A B 4 9.118 25.270 -2.847 1.00 31.09 C
ATOM 8 O4' A B 4 8.655 24.427 -3.928 1.00 35.32 O
ATOM 9 C3' A B 4 8.408 24.720 -1.622 1.00 33.10 C
ATOM 10 O3' A B 4 8.336 25.699 -0.578 1.00 32.45 O
ATOM 11 C2' A B 4 7.040 24.362 -2.187 1.00 29.09 C
ATOM 12 O2' A B 4 6.178 25.478 -2.317 1.00 29.33 O
ATOM 13 C1' A B 4 7.424 23.831 -3.571 1.00 31.43 C
ATOM 14 N9 A B 4 7.591 22.380 -3.604 1.00 27.48 N
ATOM 15 C8 A B 4 8.725 21.638 -3.397 1.00 20.24 C
ATOM 16 N7 A B 4 8.530 20.345 -3.467 1.00 22.74 N
ATOM 17 C5 A B 4 7.174 20.229 -3.749 1.00 24.71 C
ATOM 18 C6 A B 4 6.337 19.118 -3.946 1.00 21.28 C
ATOM 19 N6 A B 4 6.749 17.855 -3.884 1.00 19.69 N
ATOM 20 N1 A B 4 5.037 19.356 -4.214 1.00 23.85 N
ATOM 21 C2 A B 4 4.616 20.619 -4.276 1.00 20.73 C
ATOM 22 N3 A B 4 5.301 21.743 -4.107 1.00 23.42 N
ATOM 23 C4 A B 4 6.589 21.475 -3.843 1.00 25.07 C
ATOM 24 P G B 5 7.938 25.255 0.912 1.00 30.73 P
ATOM 25 OP1 G B 5 8.042 26.469 1.755 1.00 38.64 O
ATOM 26 OP2 G B 5 8.693 24.041 1.296 1.00 31.78 O
ATOM 27 O5' G B 5 6.404 24.868 0.769 1.00 31.92 O
TER
Atoms:
OP1: (8.042,26.469,1.755)
OP2: (8.693,24.041,1.296)
C3': (3.639,22.557,1.914)
C1': (3.427,22.057,-0.383)
C5': (5.812,23.859,1.589)
O6: (6.823,17.115,-0.829)
O4': (4.472,23.002,-0.223)
C8: (3.326,19.586,-0.901)
C2: (7.555,20.532,-0.193)
C6: (6.611,18.322,-0.680)
C5: (5.370,19.012,-0.743)
C4: (5.353,20.375,-0.516)
P: (7.938,25.255,0.912)
C4': (4.413,23.580,1.109)
C2': (2.593,22.108,0.905)
O2': (1.526,23.030,0.809)
N1: (7.671,19.183,-0.399)
N2: (8.707,21.178,0.074)
N3: (6.398,21.194,-0.244)
N7: (4.092,18.534,-0.996)
N9: (4.015,20.732,-0.597)
O5': (6.404,24.868,0.769)
O3': (3.050,23.175,3.059)
OP2: (8.693,24.041,1.296)
C3': (3.639,22.557,1.914)
C1': (3.427,22.057,-0.383)
C5': (5.812,23.859,1.589)
O6: (6.823,17.115,-0.829)
O4': (4.472,23.002,-0.223)
C8: (3.326,19.586,-0.901)
C2: (7.555,20.532,-0.193)
C6: (6.611,18.322,-0.680)
C5: (5.370,19.012,-0.743)
C4: (5.353,20.375,-0.516)
P: (7.938,25.255,0.912)
C4': (4.413,23.580,1.109)
C2': (2.593,22.108,0.905)
O2': (1.526,23.030,0.809)
N1: (7.671,19.183,-0.399)
N2: (8.707,21.178,0.074)
N3: (6.398,21.194,-0.244)
N7: (4.092,18.534,-0.996)
N9: (4.015,20.732,-0.597)
O5': (6.404,24.868,0.769)
O3': (3.050,23.175,3.059)
OP1: (12.985,24.480,-1.139)
OP2: (12.461,22.021,-1.629)
C3': (8.408,24.720,-1.622)
C1': (7.424,23.831,-3.571)
C5': (10.606,25.158,-2.774)
O4': (8.655,24.427,-3.928)
C8: (8.725,21.638,-3.397)
O2': (6.178,25.478,-2.317)
C6: (6.337,19.118,-3.946)
C5: (7.174,20.229,-3.749)
C4: (6.589,21.475,-3.843)
P: (12.454,23.443,-2.053)
C4': (9.118,25.270,-2.847)
C2': (7.040,24.362,-2.187)
C2: (4.616,20.619,-4.276)
N1: (5.037,19.356,-4.214)
N3: (5.301,21.743,-4.107)
N6: (6.749,17.855,-3.884)
N7: (8.530,20.345,-3.467)
N9: (7.591,22.380,-3.604)
O5': (10.957,23.819,-2.422)
O3': (8.336,25.699,-0.578)
OP2: (12.461,22.021,-1.629)
C3': (8.408,24.720,-1.622)
C1': (7.424,23.831,-3.571)
C5': (10.606,25.158,-2.774)
O4': (8.655,24.427,-3.928)
C8: (8.725,21.638,-3.397)
O2': (6.178,25.478,-2.317)
C6: (6.337,19.118,-3.946)
C5: (7.174,20.229,-3.749)
C4: (6.589,21.475,-3.843)
P: (12.454,23.443,-2.053)
C4': (9.118,25.270,-2.847)
C2': (7.040,24.362,-2.187)
C2: (4.616,20.619,-4.276)
N1: (5.037,19.356,-4.214)
N3: (5.301,21.743,-4.107)
N6: (6.749,17.855,-3.884)
N7: (8.530,20.345,-3.467)
N9: (7.591,22.380,-3.604)
O5': (10.957,23.819,-2.422)
O3': (8.336,25.699,-0.578)
Image (generated by PyMOL):