Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1479:1498
Extra
PDB:
ATOM 1 O3' U A 478 44.409 -1.277 -30.283 1.00 80.78 O
ATOM 2 P G A 479 43.687 -0.987 -31.685 1.00 93.81 P
ATOM 3 OP1 G A 479 43.228 0.427 -31.656 1.00 93.85 O
ATOM 4 OP2 G A 479 42.683 -2.060 -31.916 1.00 94.01 O
ATOM 5 O5' G A 479 44.873 -1.144 -32.701 1.00 94.35 O
ATOM 6 C5' G A 479 45.742 -2.248 -32.638 1.00 94.24 C
ATOM 7 C4' G A 479 46.639 -2.237 -33.818 1.00 94.92 C
ATOM 8 O4' G A 479 46.577 -3.533 -34.468 1.00 95.33 O
ATOM 9 C3' G A 479 46.245 -1.203 -34.866 1.00 95.61 C
ATOM 10 O3' G A 479 47.409 -0.693 -35.500 1.00 95.95 O
ATOM 11 C2' G A 479 45.436 -2.022 -35.861 1.00 96.28 C
ATOM 12 O2' G A 479 45.405 -1.487 -37.172 1.00 97.13 O
ATOM 13 C1' G A 479 46.149 -3.380 -35.801 1.00 96.20 C
ATOM 14 N9 G A 479 45.293 -4.523 -36.128 1.00 96.47 N
ATOM 15 C8 G A 479 44.210 -4.935 -35.401 1.00 96.08 C
ATOM 16 N7 G A 479 43.626 -5.980 -35.914 1.00 96.46 N
ATOM 17 C5 G A 479 44.372 -6.285 -37.042 1.00 97.14 C
ATOM 18 C6 G A 479 44.220 -7.321 -37.998 1.00 97.80 C
ATOM 19 O6 G A 479 43.371 -8.209 -38.053 1.00 97.92 O
ATOM 20 N1 G A 479 45.193 -7.282 -38.978 1.00 98.37 N
ATOM 21 C2 G A 479 46.186 -6.345 -39.047 1.00 98.33 C
ATOM 22 N2 G A 479 47.039 -6.474 -40.073 1.00 98.96 N
ATOM 23 N3 G A 479 46.341 -5.372 -38.164 1.00 97.73 N
ATOM 24 C4 G A 479 45.410 -5.400 -37.187 1.00 97.15 C
ATOM 25 P U A 480 48.121 0.645 -34.959 1.00 81.87 P
ATOM 26 OP1 U A 480 48.627 0.346 -33.582 1.00 80.98 O
ATOM 27 OP2 U A 480 47.143 1.761 -35.133 1.00 82.06 O
ATOM 28 O5' U A 480 49.347 0.804 -35.989 1.00 82.46 O
TER
ATOM 1 O3' U B 497 39.834 -7.297 -45.054 1.00126.63 O
ATOM 2 P A B 498 40.675 -8.461 -44.330 1.00132.62 P
ATOM 3 OP1 A B 498 40.558 -9.681 -45.179 1.00133.28 O
ATOM 4 OP2 A B 498 40.214 -8.523 -42.913 1.00131.69 O
ATOM 5 O5' A B 498 42.166 -7.905 -44.388 1.00132.52 O
ATOM 6 C5' A B 498 42.791 -7.615 -45.630 1.00133.32 C
ATOM 7 C4' A B 498 44.038 -6.808 -45.423 1.00133.06 C
ATOM 8 O4' A B 498 43.702 -5.576 -44.748 1.00132.58 O
ATOM 9 C3' A B 498 45.094 -7.461 -44.553 1.00132.39 C
ATOM 10 O3' A B 498 45.960 -8.283 -45.308 1.00132.88 O
ATOM 11 C2' A B 498 45.808 -6.282 -43.910 1.00131.86 C
ATOM 12 O2' A B 498 46.833 -5.802 -44.769 1.00132.38 O
ATOM 13 C1' A B 498 44.703 -5.228 -43.836 1.00131.87 C
ATOM 14 N9 A B 498 44.088 -5.125 -42.504 1.00131.00 N
ATOM 15 C8 A B 498 43.027 -5.841 -42.008 1.00130.76 C
ATOM 16 N7 A B 498 42.676 -5.483 -40.795 1.00129.96 N
ATOM 17 C5 A B 498 43.558 -4.449 -40.488 1.00129.67 C
ATOM 18 C6 A B 498 43.723 -3.633 -39.351 1.00128.90 C
ATOM 19 N6 A B 498 42.961 -3.740 -38.259 1.00128.24 N
ATOM 20 N1 A B 498 44.700 -2.691 -39.372 1.00128.84 N
ATOM 21 C2 A B 498 45.468 -2.578 -40.461 1.00129.51 C
ATOM 22 N3 A B 498 45.409 -3.286 -41.587 1.00130.27 N
ATOM 23 C4 A B 498 44.427 -4.211 -41.537 1.00130.31 C
ATOM 24 P U B 499 46.293 -9.777 -44.836 1.00107.80 P
ATOM 25 OP1 U B 499 47.443 -10.246 -45.663 1.00108.33 O
ATOM 26 OP2 U B 499 45.027 -10.545 -44.863 1.00107.94 O
ATOM 27 O5' U B 499 46.762 -9.587 -43.331 1.00106.73 O
TER
ATOM 2 P G A 479 43.687 -0.987 -31.685 1.00 93.81 P
ATOM 3 OP1 G A 479 43.228 0.427 -31.656 1.00 93.85 O
ATOM 4 OP2 G A 479 42.683 -2.060 -31.916 1.00 94.01 O
ATOM 5 O5' G A 479 44.873 -1.144 -32.701 1.00 94.35 O
ATOM 6 C5' G A 479 45.742 -2.248 -32.638 1.00 94.24 C
ATOM 7 C4' G A 479 46.639 -2.237 -33.818 1.00 94.92 C
ATOM 8 O4' G A 479 46.577 -3.533 -34.468 1.00 95.33 O
ATOM 9 C3' G A 479 46.245 -1.203 -34.866 1.00 95.61 C
ATOM 10 O3' G A 479 47.409 -0.693 -35.500 1.00 95.95 O
ATOM 11 C2' G A 479 45.436 -2.022 -35.861 1.00 96.28 C
ATOM 12 O2' G A 479 45.405 -1.487 -37.172 1.00 97.13 O
ATOM 13 C1' G A 479 46.149 -3.380 -35.801 1.00 96.20 C
ATOM 14 N9 G A 479 45.293 -4.523 -36.128 1.00 96.47 N
ATOM 15 C8 G A 479 44.210 -4.935 -35.401 1.00 96.08 C
ATOM 16 N7 G A 479 43.626 -5.980 -35.914 1.00 96.46 N
ATOM 17 C5 G A 479 44.372 -6.285 -37.042 1.00 97.14 C
ATOM 18 C6 G A 479 44.220 -7.321 -37.998 1.00 97.80 C
ATOM 19 O6 G A 479 43.371 -8.209 -38.053 1.00 97.92 O
ATOM 20 N1 G A 479 45.193 -7.282 -38.978 1.00 98.37 N
ATOM 21 C2 G A 479 46.186 -6.345 -39.047 1.00 98.33 C
ATOM 22 N2 G A 479 47.039 -6.474 -40.073 1.00 98.96 N
ATOM 23 N3 G A 479 46.341 -5.372 -38.164 1.00 97.73 N
ATOM 24 C4 G A 479 45.410 -5.400 -37.187 1.00 97.15 C
ATOM 25 P U A 480 48.121 0.645 -34.959 1.00 81.87 P
ATOM 26 OP1 U A 480 48.627 0.346 -33.582 1.00 80.98 O
ATOM 27 OP2 U A 480 47.143 1.761 -35.133 1.00 82.06 O
ATOM 28 O5' U A 480 49.347 0.804 -35.989 1.00 82.46 O
TER
ATOM 1 O3' U B 497 39.834 -7.297 -45.054 1.00126.63 O
ATOM 2 P A B 498 40.675 -8.461 -44.330 1.00132.62 P
ATOM 3 OP1 A B 498 40.558 -9.681 -45.179 1.00133.28 O
ATOM 4 OP2 A B 498 40.214 -8.523 -42.913 1.00131.69 O
ATOM 5 O5' A B 498 42.166 -7.905 -44.388 1.00132.52 O
ATOM 6 C5' A B 498 42.791 -7.615 -45.630 1.00133.32 C
ATOM 7 C4' A B 498 44.038 -6.808 -45.423 1.00133.06 C
ATOM 8 O4' A B 498 43.702 -5.576 -44.748 1.00132.58 O
ATOM 9 C3' A B 498 45.094 -7.461 -44.553 1.00132.39 C
ATOM 10 O3' A B 498 45.960 -8.283 -45.308 1.00132.88 O
ATOM 11 C2' A B 498 45.808 -6.282 -43.910 1.00131.86 C
ATOM 12 O2' A B 498 46.833 -5.802 -44.769 1.00132.38 O
ATOM 13 C1' A B 498 44.703 -5.228 -43.836 1.00131.87 C
ATOM 14 N9 A B 498 44.088 -5.125 -42.504 1.00131.00 N
ATOM 15 C8 A B 498 43.027 -5.841 -42.008 1.00130.76 C
ATOM 16 N7 A B 498 42.676 -5.483 -40.795 1.00129.96 N
ATOM 17 C5 A B 498 43.558 -4.449 -40.488 1.00129.67 C
ATOM 18 C6 A B 498 43.723 -3.633 -39.351 1.00128.90 C
ATOM 19 N6 A B 498 42.961 -3.740 -38.259 1.00128.24 N
ATOM 20 N1 A B 498 44.700 -2.691 -39.372 1.00128.84 N
ATOM 21 C2 A B 498 45.468 -2.578 -40.461 1.00129.51 C
ATOM 22 N3 A B 498 45.409 -3.286 -41.587 1.00130.27 N
ATOM 23 C4 A B 498 44.427 -4.211 -41.537 1.00130.31 C
ATOM 24 P U B 499 46.293 -9.777 -44.836 1.00107.80 P
ATOM 25 OP1 U B 499 47.443 -10.246 -45.663 1.00108.33 O
ATOM 26 OP2 U B 499 45.027 -10.545 -44.863 1.00107.94 O
ATOM 27 O5' U B 499 46.762 -9.587 -43.331 1.00106.73 O
TER
Atoms:
OP1: (43.228,0.427,-31.656)
OP2: (42.683,-2.060,-31.916)
C3': (46.245,-1.203,-34.866)
C1': (46.149,-3.380,-35.801)
C5': (45.742,-2.248,-32.638)
O6: (43.371,-8.209,-38.053)
O4': (46.577,-3.533,-34.468)
C8: (44.210,-4.935,-35.401)
C2: (46.186,-6.345,-39.047)
C6: (44.220,-7.321,-37.998)
C5: (44.372,-6.285,-37.042)
C4: (45.410,-5.400,-37.187)
P: (43.687,-0.987,-31.685)
C4': (46.639,-2.237,-33.818)
C2': (45.436,-2.022,-35.861)
O2': (45.405,-1.487,-37.172)
N1: (45.193,-7.282,-38.978)
N2: (47.039,-6.474,-40.073)
N3: (46.341,-5.372,-38.164)
N7: (43.626,-5.980,-35.914)
N9: (45.293,-4.523,-36.128)
O5': (44.873,-1.144,-32.701)
O3': (47.409,-0.693,-35.500)
OP2: (42.683,-2.060,-31.916)
C3': (46.245,-1.203,-34.866)
C1': (46.149,-3.380,-35.801)
C5': (45.742,-2.248,-32.638)
O6: (43.371,-8.209,-38.053)
O4': (46.577,-3.533,-34.468)
C8: (44.210,-4.935,-35.401)
C2: (46.186,-6.345,-39.047)
C6: (44.220,-7.321,-37.998)
C5: (44.372,-6.285,-37.042)
C4: (45.410,-5.400,-37.187)
P: (43.687,-0.987,-31.685)
C4': (46.639,-2.237,-33.818)
C2': (45.436,-2.022,-35.861)
O2': (45.405,-1.487,-37.172)
N1: (45.193,-7.282,-38.978)
N2: (47.039,-6.474,-40.073)
N3: (46.341,-5.372,-38.164)
N7: (43.626,-5.980,-35.914)
N9: (45.293,-4.523,-36.128)
O5': (44.873,-1.144,-32.701)
O3': (47.409,-0.693,-35.500)
OP1: (40.558,-9.681,-45.179)
OP2: (40.214,-8.523,-42.913)
C3': (45.094,-7.461,-44.553)
C1': (44.703,-5.228,-43.836)
C5': (42.791,-7.615,-45.630)
O4': (43.702,-5.576,-44.748)
C8: (43.027,-5.841,-42.008)
O2': (46.833,-5.802,-44.769)
C6: (43.723,-3.633,-39.351)
C5: (43.558,-4.449,-40.488)
C4: (44.427,-4.211,-41.537)
P: (40.675,-8.461,-44.330)
C4': (44.038,-6.808,-45.423)
C2': (45.808,-6.282,-43.910)
C2: (45.468,-2.578,-40.461)
N1: (44.700,-2.691,-39.372)
N3: (45.409,-3.286,-41.587)
N6: (42.961,-3.740,-38.259)
N7: (42.676,-5.483,-40.795)
N9: (44.088,-5.125,-42.504)
O5': (42.166,-7.905,-44.388)
O3': (45.960,-8.283,-45.308)
OP2: (40.214,-8.523,-42.913)
C3': (45.094,-7.461,-44.553)
C1': (44.703,-5.228,-43.836)
C5': (42.791,-7.615,-45.630)
O4': (43.702,-5.576,-44.748)
C8: (43.027,-5.841,-42.008)
O2': (46.833,-5.802,-44.769)
C6: (43.723,-3.633,-39.351)
C5: (43.558,-4.449,-40.488)
C4: (44.427,-4.211,-41.537)
P: (40.675,-8.461,-44.330)
C4': (44.038,-6.808,-45.423)
C2': (45.808,-6.282,-43.910)
C2: (45.468,-2.578,-40.461)
N1: (44.700,-2.691,-39.372)
N3: (45.409,-3.286,-41.587)
N6: (42.961,-3.740,-38.259)
N7: (42.676,-5.483,-40.795)
N9: (44.088,-5.125,-42.504)
O5': (42.166,-7.905,-44.388)
O3': (45.960,-8.283,-45.308)
Image (generated by PyMOL):