Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NVI:F15:F5
Extra
PDB:
ATOM 1 O3' C A 14 -30.511 -78.202 28.345 1.00 79.27 O
ATOM 2 P G A 15 -31.240 -78.212 29.784 1.00 89.20 P
ATOM 3 OP1 G A 15 -30.179 -78.129 30.818 1.00 83.56 O
ATOM 4 OP2 G A 15 -32.193 -79.372 29.798 1.00 87.54 O
ATOM 5 O5' G A 15 -32.054 -76.865 29.769 1.00 86.52 O
ATOM 6 C5' G A 15 -32.880 -76.537 28.668 1.00 79.75 C
ATOM 7 C4' G A 15 -33.557 -75.225 28.894 1.00 82.39 C
ATOM 8 O4' G A 15 -34.291 -74.860 27.697 1.00 83.22 O
ATOM 9 C3' G A 15 -34.558 -75.204 30.044 1.00 76.08 C
ATOM 10 O3' G A 15 -34.556 -73.883 30.613 1.00 69.03 O
ATOM 11 C2' G A 15 -35.882 -75.484 29.307 1.00 75.29 C
ATOM 12 O2' G A 15 -37.042 -75.053 29.986 1.00 75.20 O
ATOM 13 C1' G A 15 -35.661 -74.718 27.999 1.00 76.92 C
ATOM 14 N9 G A 15 -36.424 -75.192 26.835 1.00 79.94 N
ATOM 15 C8 G A 15 -37.287 -74.374 26.142 1.00 81.71 C
ATOM 16 N7 G A 15 -37.842 -74.912 25.093 1.00 84.69 N
ATOM 17 C5 G A 15 -37.286 -76.181 25.047 1.00 86.98 C
ATOM 18 C6 G A 15 -37.527 -77.216 24.104 1.00 87.60 C
ATOM 19 O6 G A 15 -38.290 -77.213 23.121 1.00 89.49 O
ATOM 20 N1 G A 15 -36.763 -78.337 24.397 1.00 89.36 N
ATOM 21 C2 G A 15 -35.895 -78.461 25.450 1.00 84.76 C
ATOM 22 N2 G A 15 -35.282 -79.659 25.521 1.00 89.41 N
ATOM 23 N3 G A 15 -35.661 -77.498 26.343 1.00 80.05 N
ATOM 24 C4 G A 15 -36.383 -76.376 26.095 1.00 84.26 C
ATOM 25 P U A 16 -34.739 -73.639 32.200 1.00 68.74 P
ATOM 26 OP1 U A 16 -35.336 -74.862 32.766 1.00 73.92 O
ATOM 27 OP2 U A 16 -35.468 -72.370 32.350 1.00 80.52 O
ATOM 28 O5' U A 16 -33.246 -73.457 32.740 1.00 75.09 O
TER
ATOM 1 O3' G B 4 -38.057 -72.598 19.368 1.00 90.74 O
ATOM 2 P A B 5 -39.426 -73.453 19.387 1.00 96.76 P
ATOM 3 OP1 A B 5 -40.339 -72.823 18.389 1.00 78.31 O
ATOM 4 OP2 A B 5 -39.870 -73.550 20.816 1.00 78.22 O
ATOM 5 O5' A B 5 -38.965 -74.887 18.869 1.00 89.83 O
ATOM 6 C5' A B 5 -38.002 -75.033 17.828 1.00 83.72 C
ATOM 7 C4' A B 5 -37.302 -76.363 17.933 1.00 87.62 C
ATOM 8 O4' A B 5 -36.129 -76.211 18.784 1.00 88.91 O
ATOM 9 C3' A B 5 -38.138 -77.469 18.576 1.00 91.83 C
ATOM 10 O3' A B 5 -37.743 -78.744 18.054 1.00 94.02 O
ATOM 11 C2' A B 5 -37.731 -77.363 20.042 1.00 83.51 C
ATOM 12 O2' A B 5 -37.954 -78.522 20.807 1.00 88.07 O
ATOM 13 C1' A B 5 -36.251 -77.050 19.916 1.00 85.24 C
ATOM 14 N9 A B 5 -35.705 -76.350 21.068 1.00 82.25 N
ATOM 15 C8 A B 5 -35.994 -75.098 21.529 1.00 82.22 C
ATOM 16 N7 A B 5 -35.339 -74.770 22.613 1.00 78.66 N
ATOM 17 C5 A B 5 -34.572 -75.893 22.880 1.00 82.26 C
ATOM 18 C6 A B 5 -33.649 -76.190 23.888 1.00 76.50 C
ATOM 19 N6 A B 5 -33.330 -75.354 24.866 1.00 72.21 N
ATOM 20 N1 A B 5 -33.065 -77.395 23.858 1.00 79.17 N
ATOM 21 C2 A B 5 -33.399 -78.240 22.885 1.00 84.34 C
ATOM 22 N3 A B 5 -34.244 -78.090 21.873 1.00 83.87 N
ATOM 23 C4 A B 5 -34.798 -76.875 21.935 1.00 85.99 C
ATOM 24 P C B 6 -38.340 -79.271 16.650 1.00 98.37 P
ATOM 25 OP1 C B 6 -39.538 -78.448 16.347 1.00 96.76 O
ATOM 26 OP2 C B 6 -38.491 -80.744 16.765 1.00 95.50 O
ATOM 27 O5' C B 6 -37.176 -78.926 15.615 1.00 92.70 O
TER
ATOM 2 P G A 15 -31.240 -78.212 29.784 1.00 89.20 P
ATOM 3 OP1 G A 15 -30.179 -78.129 30.818 1.00 83.56 O
ATOM 4 OP2 G A 15 -32.193 -79.372 29.798 1.00 87.54 O
ATOM 5 O5' G A 15 -32.054 -76.865 29.769 1.00 86.52 O
ATOM 6 C5' G A 15 -32.880 -76.537 28.668 1.00 79.75 C
ATOM 7 C4' G A 15 -33.557 -75.225 28.894 1.00 82.39 C
ATOM 8 O4' G A 15 -34.291 -74.860 27.697 1.00 83.22 O
ATOM 9 C3' G A 15 -34.558 -75.204 30.044 1.00 76.08 C
ATOM 10 O3' G A 15 -34.556 -73.883 30.613 1.00 69.03 O
ATOM 11 C2' G A 15 -35.882 -75.484 29.307 1.00 75.29 C
ATOM 12 O2' G A 15 -37.042 -75.053 29.986 1.00 75.20 O
ATOM 13 C1' G A 15 -35.661 -74.718 27.999 1.00 76.92 C
ATOM 14 N9 G A 15 -36.424 -75.192 26.835 1.00 79.94 N
ATOM 15 C8 G A 15 -37.287 -74.374 26.142 1.00 81.71 C
ATOM 16 N7 G A 15 -37.842 -74.912 25.093 1.00 84.69 N
ATOM 17 C5 G A 15 -37.286 -76.181 25.047 1.00 86.98 C
ATOM 18 C6 G A 15 -37.527 -77.216 24.104 1.00 87.60 C
ATOM 19 O6 G A 15 -38.290 -77.213 23.121 1.00 89.49 O
ATOM 20 N1 G A 15 -36.763 -78.337 24.397 1.00 89.36 N
ATOM 21 C2 G A 15 -35.895 -78.461 25.450 1.00 84.76 C
ATOM 22 N2 G A 15 -35.282 -79.659 25.521 1.00 89.41 N
ATOM 23 N3 G A 15 -35.661 -77.498 26.343 1.00 80.05 N
ATOM 24 C4 G A 15 -36.383 -76.376 26.095 1.00 84.26 C
ATOM 25 P U A 16 -34.739 -73.639 32.200 1.00 68.74 P
ATOM 26 OP1 U A 16 -35.336 -74.862 32.766 1.00 73.92 O
ATOM 27 OP2 U A 16 -35.468 -72.370 32.350 1.00 80.52 O
ATOM 28 O5' U A 16 -33.246 -73.457 32.740 1.00 75.09 O
TER
ATOM 1 O3' G B 4 -38.057 -72.598 19.368 1.00 90.74 O
ATOM 2 P A B 5 -39.426 -73.453 19.387 1.00 96.76 P
ATOM 3 OP1 A B 5 -40.339 -72.823 18.389 1.00 78.31 O
ATOM 4 OP2 A B 5 -39.870 -73.550 20.816 1.00 78.22 O
ATOM 5 O5' A B 5 -38.965 -74.887 18.869 1.00 89.83 O
ATOM 6 C5' A B 5 -38.002 -75.033 17.828 1.00 83.72 C
ATOM 7 C4' A B 5 -37.302 -76.363 17.933 1.00 87.62 C
ATOM 8 O4' A B 5 -36.129 -76.211 18.784 1.00 88.91 O
ATOM 9 C3' A B 5 -38.138 -77.469 18.576 1.00 91.83 C
ATOM 10 O3' A B 5 -37.743 -78.744 18.054 1.00 94.02 O
ATOM 11 C2' A B 5 -37.731 -77.363 20.042 1.00 83.51 C
ATOM 12 O2' A B 5 -37.954 -78.522 20.807 1.00 88.07 O
ATOM 13 C1' A B 5 -36.251 -77.050 19.916 1.00 85.24 C
ATOM 14 N9 A B 5 -35.705 -76.350 21.068 1.00 82.25 N
ATOM 15 C8 A B 5 -35.994 -75.098 21.529 1.00 82.22 C
ATOM 16 N7 A B 5 -35.339 -74.770 22.613 1.00 78.66 N
ATOM 17 C5 A B 5 -34.572 -75.893 22.880 1.00 82.26 C
ATOM 18 C6 A B 5 -33.649 -76.190 23.888 1.00 76.50 C
ATOM 19 N6 A B 5 -33.330 -75.354 24.866 1.00 72.21 N
ATOM 20 N1 A B 5 -33.065 -77.395 23.858 1.00 79.17 N
ATOM 21 C2 A B 5 -33.399 -78.240 22.885 1.00 84.34 C
ATOM 22 N3 A B 5 -34.244 -78.090 21.873 1.00 83.87 N
ATOM 23 C4 A B 5 -34.798 -76.875 21.935 1.00 85.99 C
ATOM 24 P C B 6 -38.340 -79.271 16.650 1.00 98.37 P
ATOM 25 OP1 C B 6 -39.538 -78.448 16.347 1.00 96.76 O
ATOM 26 OP2 C B 6 -38.491 -80.744 16.765 1.00 95.50 O
ATOM 27 O5' C B 6 -37.176 -78.926 15.615 1.00 92.70 O
TER
Atoms:
OP1: (-30.179,-78.129,30.818)
OP2: (-32.193,-79.372,29.798)
C3': (-34.558,-75.204,30.044)
C1': (-35.661,-74.718,27.999)
C5': (-32.880,-76.537,28.668)
O6: (-38.290,-77.213,23.121)
O4': (-34.291,-74.860,27.697)
C8: (-37.287,-74.374,26.142)
C2: (-35.895,-78.461,25.450)
C6: (-37.527,-77.216,24.104)
C5: (-37.286,-76.181,25.047)
C4: (-36.383,-76.376,26.095)
P: (-31.240,-78.212,29.784)
C4': (-33.557,-75.225,28.894)
C2': (-35.882,-75.484,29.307)
O2': (-37.042,-75.053,29.986)
N1: (-36.763,-78.337,24.397)
N2: (-35.282,-79.659,25.521)
N3: (-35.661,-77.498,26.343)
N7: (-37.842,-74.912,25.093)
N9: (-36.424,-75.192,26.835)
O5': (-32.054,-76.865,29.769)
O3': (-34.556,-73.883,30.613)
OP2: (-32.193,-79.372,29.798)
C3': (-34.558,-75.204,30.044)
C1': (-35.661,-74.718,27.999)
C5': (-32.880,-76.537,28.668)
O6: (-38.290,-77.213,23.121)
O4': (-34.291,-74.860,27.697)
C8: (-37.287,-74.374,26.142)
C2: (-35.895,-78.461,25.450)
C6: (-37.527,-77.216,24.104)
C5: (-37.286,-76.181,25.047)
C4: (-36.383,-76.376,26.095)
P: (-31.240,-78.212,29.784)
C4': (-33.557,-75.225,28.894)
C2': (-35.882,-75.484,29.307)
O2': (-37.042,-75.053,29.986)
N1: (-36.763,-78.337,24.397)
N2: (-35.282,-79.659,25.521)
N3: (-35.661,-77.498,26.343)
N7: (-37.842,-74.912,25.093)
N9: (-36.424,-75.192,26.835)
O5': (-32.054,-76.865,29.769)
O3': (-34.556,-73.883,30.613)
OP1: (-40.339,-72.823,18.389)
OP2: (-39.870,-73.550,20.816)
C3': (-38.138,-77.469,18.576)
C1': (-36.251,-77.050,19.916)
C5': (-38.002,-75.033,17.828)
O4': (-36.129,-76.211,18.784)
C8: (-35.994,-75.098,21.529)
O2': (-37.954,-78.522,20.807)
C6: (-33.649,-76.190,23.888)
C5: (-34.572,-75.893,22.880)
C4: (-34.798,-76.875,21.935)
P: (-39.426,-73.453,19.387)
C4': (-37.302,-76.363,17.933)
C2': (-37.731,-77.363,20.042)
C2: (-33.399,-78.240,22.885)
N1: (-33.065,-77.395,23.858)
N3: (-34.244,-78.090,21.873)
N6: (-33.330,-75.354,24.866)
N7: (-35.339,-74.770,22.613)
N9: (-35.705,-76.350,21.068)
O5': (-38.965,-74.887,18.869)
O3': (-37.743,-78.744,18.054)
OP2: (-39.870,-73.550,20.816)
C3': (-38.138,-77.469,18.576)
C1': (-36.251,-77.050,19.916)
C5': (-38.002,-75.033,17.828)
O4': (-36.129,-76.211,18.784)
C8: (-35.994,-75.098,21.529)
O2': (-37.954,-78.522,20.807)
C6: (-33.649,-76.190,23.888)
C5: (-34.572,-75.893,22.880)
C4: (-34.798,-76.875,21.935)
P: (-39.426,-73.453,19.387)
C4': (-37.302,-76.363,17.933)
C2': (-37.731,-77.363,20.042)
C2: (-33.399,-78.240,22.885)
N1: (-33.065,-77.395,23.858)
N3: (-34.244,-78.090,21.873)
N6: (-33.330,-75.354,24.866)
N7: (-35.339,-74.770,22.613)
N9: (-35.705,-76.350,21.068)
O5': (-38.965,-74.887,18.869)
O3': (-37.743,-78.744,18.054)
Image (generated by PyMOL):