Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2H1M:B5:B4
Extra
PDB:
ATOM 1 O3' A A 4 -18.305 38.629 4.489 1.00 25.90 O
ATOM 2 P G A 5 -17.935 37.847 3.150 1.00 26.38 P
ATOM 3 OP1 G A 5 -18.609 38.534 2.033 1.00 26.58 O
ATOM 4 OP2 G A 5 -18.177 36.398 3.349 1.00 26.86 O
ATOM 5 O5' G A 5 -16.359 38.105 3.068 1.00 27.86 O
ATOM 6 C5' G A 5 -15.459 37.026 2.929 1.00 30.45 C
ATOM 7 C4' G A 5 -14.137 37.356 3.580 1.00 32.46 C
ATOM 8 O4' G A 5 -14.157 36.976 4.978 1.00 33.23 O
ATOM 9 C3' G A 5 -12.975 36.557 3.029 1.00 33.77 C
ATOM 10 O3' G A 5 -12.505 37.127 1.826 1.00 35.42 O
ATOM 11 C2' G A 5 -11.964 36.682 4.160 1.00 33.96 C
ATOM 12 O2' G A 5 -11.345 37.954 4.229 1.00 34.10 O
ATOM 13 C1' G A 5 -12.888 36.456 5.351 1.00 34.09 C
ATOM 14 N9 G A 5 -12.990 35.038 5.725 1.00 34.29 N
ATOM 15 C8 G A 5 -11.980 34.263 6.266 1.00 34.39 C
ATOM 16 N7 G A 5 -12.326 33.029 6.506 1.00 34.19 N
ATOM 17 C5 G A 5 -13.655 32.978 6.100 1.00 34.19 C
ATOM 18 C6 G A 5 -14.570 31.898 6.118 1.00 34.19 C
ATOM 19 O6 G A 5 -14.373 30.746 6.510 1.00 34.20 O
ATOM 20 N1 G A 5 -15.826 32.247 5.619 1.00 34.44 N
ATOM 21 C2 G A 5 -16.161 33.502 5.155 1.00 34.47 C
ATOM 22 N2 G A 5 -17.421 33.660 4.708 1.00 34.35 N
ATOM 23 N3 G A 5 -15.310 34.525 5.133 1.00 34.21 N
ATOM 24 C4 G A 5 -14.080 34.200 5.615 1.00 34.13 C
ATOM 25 P U A 6 -12.323 36.191 0.542 1.00 36.66 P
ATOM 26 OP1 U A 6 -11.807 37.048 -0.550 1.00 36.53 O
ATOM 27 OP2 U A 6 -13.588 35.444 0.349 1.00 36.39 O
ATOM 28 O5' U A 6 -11.193 35.141 0.989 1.00 37.54 O
TER
ATOM 1 P A B 4 -22.397 36.481 6.249 1.00 26.23 P
ATOM 2 OP1 A B 4 -23.086 37.359 5.281 1.00 26.50 O
ATOM 3 OP2 A B 4 -22.324 35.030 5.979 1.00 26.34 O
ATOM 4 O5' A B 4 -20.912 37.009 6.472 1.00 26.16 O
ATOM 5 C5' A B 4 -20.668 38.400 6.590 1.00 25.53 C
ATOM 6 C4' A B 4 -19.184 38.642 6.728 1.00 25.33 C
ATOM 7 O4' A B 4 -18.731 38.087 7.984 1.00 25.11 O
ATOM 8 C3' A B 4 -18.331 37.918 5.704 1.00 25.33 C
ATOM 9 O3' A B 4 -18.305 38.629 4.489 1.00 25.90 O
ATOM 10 C2' A B 4 -16.984 37.886 6.410 1.00 25.09 C
ATOM 11 O2' A B 4 -16.324 39.134 6.388 1.00 25.18 O
ATOM 12 C1' A B 4 -17.434 37.545 7.825 1.00 24.94 C
ATOM 13 N9 A B 4 -17.505 36.108 8.069 1.00 24.92 N
ATOM 14 C8 A B 4 -18.608 35.305 7.965 1.00 24.99 C
ATOM 15 N7 A B 4 -18.376 34.045 8.242 1.00 25.11 N
ATOM 16 C5 A B 4 -17.029 34.019 8.550 1.00 24.82 C
ATOM 17 C6 A B 4 -16.166 32.974 8.934 1.00 24.82 C
ATOM 18 N6 A B 4 -16.569 31.706 9.071 1.00 24.88 N
ATOM 19 N1 A B 4 -14.873 33.284 9.171 1.00 24.92 N
ATOM 20 C2 A B 4 -14.475 34.556 9.030 1.00 25.00 C
ATOM 21 N3 A B 4 -15.194 35.622 8.675 1.00 25.00 N
ATOM 22 C4 A B 4 -16.475 35.282 8.448 1.00 24.88 C
ATOM 23 P G B 5 -17.935 37.847 3.150 1.00 26.38 P
ATOM 24 OP1 G B 5 -18.609 38.534 2.033 1.00 26.58 O
ATOM 25 OP2 G B 5 -18.177 36.398 3.349 1.00 26.86 O
ATOM 26 O5' G B 5 -16.359 38.105 3.068 1.00 27.86 O
TER
ATOM 2 P G A 5 -17.935 37.847 3.150 1.00 26.38 P
ATOM 3 OP1 G A 5 -18.609 38.534 2.033 1.00 26.58 O
ATOM 4 OP2 G A 5 -18.177 36.398 3.349 1.00 26.86 O
ATOM 5 O5' G A 5 -16.359 38.105 3.068 1.00 27.86 O
ATOM 6 C5' G A 5 -15.459 37.026 2.929 1.00 30.45 C
ATOM 7 C4' G A 5 -14.137 37.356 3.580 1.00 32.46 C
ATOM 8 O4' G A 5 -14.157 36.976 4.978 1.00 33.23 O
ATOM 9 C3' G A 5 -12.975 36.557 3.029 1.00 33.77 C
ATOM 10 O3' G A 5 -12.505 37.127 1.826 1.00 35.42 O
ATOM 11 C2' G A 5 -11.964 36.682 4.160 1.00 33.96 C
ATOM 12 O2' G A 5 -11.345 37.954 4.229 1.00 34.10 O
ATOM 13 C1' G A 5 -12.888 36.456 5.351 1.00 34.09 C
ATOM 14 N9 G A 5 -12.990 35.038 5.725 1.00 34.29 N
ATOM 15 C8 G A 5 -11.980 34.263 6.266 1.00 34.39 C
ATOM 16 N7 G A 5 -12.326 33.029 6.506 1.00 34.19 N
ATOM 17 C5 G A 5 -13.655 32.978 6.100 1.00 34.19 C
ATOM 18 C6 G A 5 -14.570 31.898 6.118 1.00 34.19 C
ATOM 19 O6 G A 5 -14.373 30.746 6.510 1.00 34.20 O
ATOM 20 N1 G A 5 -15.826 32.247 5.619 1.00 34.44 N
ATOM 21 C2 G A 5 -16.161 33.502 5.155 1.00 34.47 C
ATOM 22 N2 G A 5 -17.421 33.660 4.708 1.00 34.35 N
ATOM 23 N3 G A 5 -15.310 34.525 5.133 1.00 34.21 N
ATOM 24 C4 G A 5 -14.080 34.200 5.615 1.00 34.13 C
ATOM 25 P U A 6 -12.323 36.191 0.542 1.00 36.66 P
ATOM 26 OP1 U A 6 -11.807 37.048 -0.550 1.00 36.53 O
ATOM 27 OP2 U A 6 -13.588 35.444 0.349 1.00 36.39 O
ATOM 28 O5' U A 6 -11.193 35.141 0.989 1.00 37.54 O
TER
ATOM 1 P A B 4 -22.397 36.481 6.249 1.00 26.23 P
ATOM 2 OP1 A B 4 -23.086 37.359 5.281 1.00 26.50 O
ATOM 3 OP2 A B 4 -22.324 35.030 5.979 1.00 26.34 O
ATOM 4 O5' A B 4 -20.912 37.009 6.472 1.00 26.16 O
ATOM 5 C5' A B 4 -20.668 38.400 6.590 1.00 25.53 C
ATOM 6 C4' A B 4 -19.184 38.642 6.728 1.00 25.33 C
ATOM 7 O4' A B 4 -18.731 38.087 7.984 1.00 25.11 O
ATOM 8 C3' A B 4 -18.331 37.918 5.704 1.00 25.33 C
ATOM 9 O3' A B 4 -18.305 38.629 4.489 1.00 25.90 O
ATOM 10 C2' A B 4 -16.984 37.886 6.410 1.00 25.09 C
ATOM 11 O2' A B 4 -16.324 39.134 6.388 1.00 25.18 O
ATOM 12 C1' A B 4 -17.434 37.545 7.825 1.00 24.94 C
ATOM 13 N9 A B 4 -17.505 36.108 8.069 1.00 24.92 N
ATOM 14 C8 A B 4 -18.608 35.305 7.965 1.00 24.99 C
ATOM 15 N7 A B 4 -18.376 34.045 8.242 1.00 25.11 N
ATOM 16 C5 A B 4 -17.029 34.019 8.550 1.00 24.82 C
ATOM 17 C6 A B 4 -16.166 32.974 8.934 1.00 24.82 C
ATOM 18 N6 A B 4 -16.569 31.706 9.071 1.00 24.88 N
ATOM 19 N1 A B 4 -14.873 33.284 9.171 1.00 24.92 N
ATOM 20 C2 A B 4 -14.475 34.556 9.030 1.00 25.00 C
ATOM 21 N3 A B 4 -15.194 35.622 8.675 1.00 25.00 N
ATOM 22 C4 A B 4 -16.475 35.282 8.448 1.00 24.88 C
ATOM 23 P G B 5 -17.935 37.847 3.150 1.00 26.38 P
ATOM 24 OP1 G B 5 -18.609 38.534 2.033 1.00 26.58 O
ATOM 25 OP2 G B 5 -18.177 36.398 3.349 1.00 26.86 O
ATOM 26 O5' G B 5 -16.359 38.105 3.068 1.00 27.86 O
TER
Atoms:
OP1: (-18.609,38.534,2.033)
OP2: (-18.177,36.398,3.349)
C3': (-12.975,36.557,3.029)
C1': (-12.888,36.456,5.351)
C5': (-15.459,37.026,2.929)
O6: (-14.373,30.746,6.510)
O4': (-14.157,36.976,4.978)
C8: (-11.980,34.263,6.266)
C2: (-16.161,33.502,5.155)
C6: (-14.570,31.898,6.118)
C5: (-13.655,32.978,6.100)
C4: (-14.080,34.200,5.615)
P: (-17.935,37.847,3.150)
C4': (-14.137,37.356,3.580)
C2': (-11.964,36.682,4.160)
O2': (-11.345,37.954,4.229)
N1: (-15.826,32.247,5.619)
N2: (-17.421,33.660,4.708)
N3: (-15.310,34.525,5.133)
N7: (-12.326,33.029,6.506)
N9: (-12.990,35.038,5.725)
O5': (-16.359,38.105,3.068)
O3': (-12.505,37.127,1.826)
OP2: (-18.177,36.398,3.349)
C3': (-12.975,36.557,3.029)
C1': (-12.888,36.456,5.351)
C5': (-15.459,37.026,2.929)
O6: (-14.373,30.746,6.510)
O4': (-14.157,36.976,4.978)
C8: (-11.980,34.263,6.266)
C2: (-16.161,33.502,5.155)
C6: (-14.570,31.898,6.118)
C5: (-13.655,32.978,6.100)
C4: (-14.080,34.200,5.615)
P: (-17.935,37.847,3.150)
C4': (-14.137,37.356,3.580)
C2': (-11.964,36.682,4.160)
O2': (-11.345,37.954,4.229)
N1: (-15.826,32.247,5.619)
N2: (-17.421,33.660,4.708)
N3: (-15.310,34.525,5.133)
N7: (-12.326,33.029,6.506)
N9: (-12.990,35.038,5.725)
O5': (-16.359,38.105,3.068)
O3': (-12.505,37.127,1.826)
OP1: (-23.086,37.359,5.281)
OP2: (-22.324,35.030,5.979)
C3': (-18.331,37.918,5.704)
C1': (-17.434,37.545,7.825)
C5': (-20.668,38.400,6.590)
O4': (-18.731,38.087,7.984)
C8: (-18.608,35.305,7.965)
O2': (-16.324,39.134,6.388)
C6: (-16.166,32.974,8.934)
C5: (-17.029,34.019,8.550)
C4: (-16.475,35.282,8.448)
P: (-22.397,36.481,6.249)
C4': (-19.184,38.642,6.728)
C2': (-16.984,37.886,6.410)
C2: (-14.475,34.556,9.030)
N1: (-14.873,33.284,9.171)
N3: (-15.194,35.622,8.675)
N6: (-16.569,31.706,9.071)
N7: (-18.376,34.045,8.242)
N9: (-17.505,36.108,8.069)
O5': (-20.912,37.009,6.472)
O3': (-18.305,38.629,4.489)
OP2: (-22.324,35.030,5.979)
C3': (-18.331,37.918,5.704)
C1': (-17.434,37.545,7.825)
C5': (-20.668,38.400,6.590)
O4': (-18.731,38.087,7.984)
C8: (-18.608,35.305,7.965)
O2': (-16.324,39.134,6.388)
C6: (-16.166,32.974,8.934)
C5: (-17.029,34.019,8.550)
C4: (-16.475,35.282,8.448)
P: (-22.397,36.481,6.249)
C4': (-19.184,38.642,6.728)
C2': (-16.984,37.886,6.410)
C2: (-14.475,34.556,9.030)
N1: (-14.873,33.284,9.171)
N3: (-15.194,35.622,8.675)
N6: (-16.569,31.706,9.071)
N7: (-18.376,34.045,8.242)
N9: (-17.505,36.108,8.069)
O5': (-20.912,37.009,6.472)
O3': (-18.305,38.629,4.489)
Image (generated by PyMOL):