ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3PDR:X14:X139

Extra

PDB:
ATOM 1 O3' U A 13 22.719 23.359 34.160 1.00 23.25 O
ATOM 2 P G A 14 21.393 22.803 33.477 1.00 25.74 P
ATOM 3 OP1 G A 14 20.310 23.488 34.225 1.00 22.10 O
ATOM 4 OP2 G A 14 21.455 21.338 33.414 1.00 20.45 O
ATOM 5 O5' G A 14 21.494 23.335 31.974 1.00 20.41 O
ATOM 6 C5' G A 14 21.181 24.663 31.567 1.00 22.94 C
ATOM 7 C4' G A 14 20.985 24.693 30.071 1.00 19.89 C
ATOM 8 O4' G A 14 22.143 24.063 29.460 1.00 20.30 O
ATOM 9 C3' G A 14 19.784 23.883 29.598 1.00 18.25 C
ATOM 10 O3' G A 14 19.385 24.354 28.321 1.00 21.19 O
ATOM 11 C2' G A 14 20.375 22.503 29.387 1.00 21.74 C
ATOM 12 O2' G A 14 19.598 21.672 28.542 1.00 19.64 O
ATOM 13 C1' G A 14 21.747 22.872 28.808 1.00 18.42 C
ATOM 14 N9 G A 14 22.734 21.818 29.034 1.00 17.05 N
ATOM 15 C8 G A 14 22.879 21.082 30.188 1.00 18.79 C
ATOM 16 N7 G A 14 23.803 20.173 30.085 1.00 19.65 N
ATOM 17 C5 G A 14 24.279 20.292 28.779 1.00 17.20 C
ATOM 18 C6 G A 14 25.269 19.566 28.081 1.00 17.64 C
ATOM 19 O6 G A 14 25.966 18.627 28.496 1.00 17.79 O
ATOM 20 N1 G A 14 25.435 20.033 26.774 1.00 16.95 N
ATOM 21 C2 G A 14 24.714 21.053 26.210 1.00 16.97 C
ATOM 22 N2 G A 14 24.994 21.369 24.927 1.00 17.68 N
ATOM 23 N3 G A 14 23.794 21.735 26.854 1.00 14.15 N
ATOM 24 C4 G A 14 23.611 21.300 28.116 1.00 18.65 C
ATOM 25 P A A 15 18.157 25.349 28.171 1.00 22.81 P
ATOM 26 OP1 A A 15 18.488 26.588 28.904 1.00 22.60 O
ATOM 27 OP2 A A 15 16.924 24.632 28.522 1.00 20.68 O
ATOM 28 O5' A A 15 18.264 25.598 26.609 1.00 20.88 O
TER

ATOM 1 O3' U B 138 25.198 12.102 25.019 1.00 20.10 O
ATOM 2 P A B 139 26.361 13.134 25.379 1.00 23.08 P
ATOM 3 OP1 A B 139 27.517 12.597 24.607 1.00 26.14 O
ATOM 4 OP2 A B 139 26.453 13.279 26.848 1.00 22.73 O
ATOM 5 O5' A B 139 25.910 14.507 24.717 1.00 19.90 O
ATOM 6 C5' A B 139 25.963 14.720 23.321 1.00 17.12 C
ATOM 7 C4' A B 139 25.314 16.037 22.965 1.00 18.61 C
ATOM 8 O4' A B 139 23.918 15.989 23.370 1.00 17.96 O
ATOM 9 C3' A B 139 25.837 17.279 23.683 1.00 19.04 C
ATOM 10 O3' A B 139 27.046 17.806 23.156 1.00 18.42 O
ATOM 11 C2' A B 139 24.658 18.234 23.568 1.00 18.48 C
ATOM 12 O2' A B 139 24.543 18.740 22.244 1.00 16.54 O
ATOM 13 C1' A B 139 23.498 17.269 23.800 1.00 16.63 C
ATOM 14 N9 A B 139 23.151 17.228 25.232 1.00 16.32 N
ATOM 15 C8 A B 139 23.555 16.324 26.188 1.00 19.34 C
ATOM 16 N7 A B 139 23.065 16.584 27.384 1.00 19.43 N
ATOM 17 C5 A B 139 22.312 17.742 27.193 1.00 17.88 C
ATOM 18 C6 A B 139 21.546 18.532 28.069 1.00 18.08 C
ATOM 19 N6 A B 139 21.401 18.264 29.382 1.00 17.38 N
ATOM 20 N1 A B 139 20.917 19.611 27.543 1.00 17.83 N
ATOM 21 C2 A B 139 21.059 19.889 26.233 1.00 19.79 C
ATOM 22 N3 A B 139 21.762 19.220 25.307 1.00 16.33 N
ATOM 23 C4 A B 139 22.365 18.147 25.866 1.00 16.05 C
ATOM 24 P A B 140 28.130 18.454 24.171 1.00 18.21 P
ATOM 25 OP1 A B 140 28.632 17.423 25.115 1.00 19.83 O
ATOM 26 OP2 A B 140 27.424 19.587 24.750 1.00 17.16 O
ATOM 27 O5' A B 140 29.273 18.891 23.143 1.00 20.33 O
TER

Atoms:
OP1: (20.310,23.488,34.225)
OP2: (21.455,21.338,33.414)
C3': (19.784,23.883,29.598)
C1': (21.747,22.872,28.808)
C5': (21.181,24.663,31.567)
O6: (25.966,18.627,28.496)
O4': (22.143,24.063,29.460)
C8: (22.879,21.082,30.188)
C2: (24.714,21.053,26.210)
C6: (25.269,19.566,28.081)
C5: (24.279,20.292,28.779)
C4: (23.611,21.300,28.116)
P: (21.393,22.803,33.477)
C4': (20.985,24.693,30.071)
C2': (20.375,22.503,29.387)
O2': (19.598,21.672,28.542)
N1: (25.435,20.033,26.774)
N2: (24.994,21.369,24.927)
N3: (23.794,21.735,26.854)
N7: (23.803,20.173,30.085)
N9: (22.734,21.818,29.034)
O5': (21.494,23.335,31.974)
O3': (19.385,24.354,28.321)
OP1: (27.517,12.597,24.607)
OP2: (26.453,13.279,26.848)
C3': (25.837,17.279,23.683)
C1': (23.498,17.269,23.800)
C5': (25.963,14.720,23.321)
O4': (23.918,15.989,23.370)
C8: (23.555,16.324,26.188)
O2': (24.543,18.740,22.244)
C6: (21.546,18.532,28.069)
C5: (22.312,17.742,27.193)
C4: (22.365,18.147,25.866)
P: (26.361,13.134,25.379)
C4': (25.314,16.037,22.965)
C2': (24.658,18.234,23.568)
C2: (21.059,19.889,26.233)
N1: (20.917,19.611,27.543)
N3: (21.762,19.220,25.307)
N6: (21.401,18.264,29.382)
N7: (23.065,16.584,27.384)
N9: (23.151,17.228,25.232)
O5': (25.910,14.507,24.717)
O3': (27.046,17.806,23.156)
Image (generated by PyMOL):
PyMOL image
show in jmol