Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0699:0700
Extra
PDB:
ATOM 1 O3' G A 698 10.743 64.766 53.425 1.00 55.20 O
ATOM 2 P G A 699 9.473 64.012 54.067 1.00 57.91 P
ATOM 3 OP1 G A 699 8.278 64.406 53.286 1.00 57.30 O
ATOM 4 OP2 G A 699 9.478 64.208 55.539 1.00 56.60 O
ATOM 5 O5' G A 699 9.779 62.478 53.773 1.00 56.35 O
ATOM 6 C5' G A 699 10.075 62.040 52.439 1.00 56.07 C
ATOM 7 C4' G A 699 10.539 60.610 52.452 1.00 58.00 C
ATOM 8 O4' G A 699 11.795 60.512 53.172 1.00 57.46 O
ATOM 9 C3' G A 699 9.625 59.641 53.184 1.00 59.36 C
ATOM 10 O3' G A 699 8.523 59.236 52.388 1.00 61.07 O
ATOM 11 C2' G A 699 10.573 58.499 53.508 1.00 59.17 C
ATOM 12 O2' G A 699 10.806 57.660 52.392 1.00 60.03 O
ATOM 13 C1' G A 699 11.845 59.274 53.866 1.00 58.00 C
ATOM 14 N9 G A 699 11.933 59.550 55.297 1.00 56.43 N
ATOM 15 C8 G A 699 11.759 60.759 55.935 1.00 56.31 C
ATOM 16 N7 G A 699 11.903 60.679 57.232 1.00 55.61 N
ATOM 17 C5 G A 699 12.191 59.339 57.464 1.00 56.48 C
ATOM 18 C6 G A 699 12.454 58.645 58.677 1.00 55.93 C
ATOM 19 O6 G A 699 12.511 59.091 59.827 1.00 56.51 O
ATOM 20 N1 G A 699 12.668 57.292 58.453 1.00 55.80 N
ATOM 21 C2 G A 699 12.640 56.679 57.229 1.00 55.12 C
ATOM 22 N2 G A 699 12.836 55.360 57.229 1.00 55.73 N
ATOM 23 N3 G A 699 12.428 57.311 56.091 1.00 56.29 N
ATOM 24 C4 G A 699 12.206 58.629 56.281 1.00 56.97 C
ATOM 25 P C A 700 7.086 59.027 53.075 1.00 62.52 P
ATOM 26 OP1 C A 700 6.153 58.694 51.969 1.00 63.14 O
ATOM 27 OP2 C A 700 6.779 60.173 53.971 1.00 61.25 O
ATOM 28 O5' C A 700 7.301 57.739 53.986 1.00 63.81 O
TER
ATOM 1 O3' G B 699 8.523 59.236 52.388 1.00 61.07 O
ATOM 2 P C B 700 7.086 59.027 53.075 1.00 62.52 P
ATOM 3 OP1 C B 700 6.153 58.694 51.969 1.00 63.14 O
ATOM 4 OP2 C B 700 6.779 60.173 53.971 1.00 61.25 O
ATOM 5 O5' C B 700 7.301 57.739 53.986 1.00 63.81 O
ATOM 6 C5' C B 700 7.736 56.494 53.405 1.00 66.61 C
ATOM 7 C4' C B 700 7.858 55.429 54.469 1.00 69.10 C
ATOM 8 O4' C B 700 9.051 55.641 55.272 1.00 68.43 O
ATOM 9 C3' C B 700 6.735 55.384 55.493 1.00 70.30 C
ATOM 10 O3' C B 700 5.553 54.765 54.994 1.00 71.50 O
ATOM 11 C2' C B 700 7.386 54.621 56.639 1.00 69.98 C
ATOM 12 O2' C B 700 7.417 53.223 56.436 1.00 70.67 O
ATOM 13 C1' C B 700 8.810 55.190 56.598 1.00 68.70 C
ATOM 14 N1 C B 700 8.969 56.323 57.529 1.00 67.87 N
ATOM 15 C2 C B 700 9.473 56.071 58.811 1.00 67.36 C
ATOM 16 O2 C B 700 9.827 54.924 59.100 1.00 69.13 O
ATOM 17 N3 C B 700 9.567 57.085 59.698 1.00 66.57 N
ATOM 18 C4 C B 700 9.195 58.316 59.344 1.00 65.82 C
ATOM 19 N4 C B 700 9.292 59.282 60.258 1.00 63.83 N
ATOM 20 C5 C B 700 8.704 58.609 58.037 1.00 65.79 C
ATOM 21 C6 C B 700 8.611 57.594 57.169 1.00 66.88 C
ATOM 22 P U B 701 4.121 55.194 55.587 1.00 73.47 P
ATOM 23 OP1 U B 701 3.068 54.569 54.748 1.00 73.93 O
ATOM 24 OP2 U B 701 4.117 56.665 55.790 1.00 73.33 O
ATOM 25 O5' U B 701 4.109 54.513 57.024 1.00 73.64 O
TER
ATOM 2 P G A 699 9.473 64.012 54.067 1.00 57.91 P
ATOM 3 OP1 G A 699 8.278 64.406 53.286 1.00 57.30 O
ATOM 4 OP2 G A 699 9.478 64.208 55.539 1.00 56.60 O
ATOM 5 O5' G A 699 9.779 62.478 53.773 1.00 56.35 O
ATOM 6 C5' G A 699 10.075 62.040 52.439 1.00 56.07 C
ATOM 7 C4' G A 699 10.539 60.610 52.452 1.00 58.00 C
ATOM 8 O4' G A 699 11.795 60.512 53.172 1.00 57.46 O
ATOM 9 C3' G A 699 9.625 59.641 53.184 1.00 59.36 C
ATOM 10 O3' G A 699 8.523 59.236 52.388 1.00 61.07 O
ATOM 11 C2' G A 699 10.573 58.499 53.508 1.00 59.17 C
ATOM 12 O2' G A 699 10.806 57.660 52.392 1.00 60.03 O
ATOM 13 C1' G A 699 11.845 59.274 53.866 1.00 58.00 C
ATOM 14 N9 G A 699 11.933 59.550 55.297 1.00 56.43 N
ATOM 15 C8 G A 699 11.759 60.759 55.935 1.00 56.31 C
ATOM 16 N7 G A 699 11.903 60.679 57.232 1.00 55.61 N
ATOM 17 C5 G A 699 12.191 59.339 57.464 1.00 56.48 C
ATOM 18 C6 G A 699 12.454 58.645 58.677 1.00 55.93 C
ATOM 19 O6 G A 699 12.511 59.091 59.827 1.00 56.51 O
ATOM 20 N1 G A 699 12.668 57.292 58.453 1.00 55.80 N
ATOM 21 C2 G A 699 12.640 56.679 57.229 1.00 55.12 C
ATOM 22 N2 G A 699 12.836 55.360 57.229 1.00 55.73 N
ATOM 23 N3 G A 699 12.428 57.311 56.091 1.00 56.29 N
ATOM 24 C4 G A 699 12.206 58.629 56.281 1.00 56.97 C
ATOM 25 P C A 700 7.086 59.027 53.075 1.00 62.52 P
ATOM 26 OP1 C A 700 6.153 58.694 51.969 1.00 63.14 O
ATOM 27 OP2 C A 700 6.779 60.173 53.971 1.00 61.25 O
ATOM 28 O5' C A 700 7.301 57.739 53.986 1.00 63.81 O
TER
ATOM 1 O3' G B 699 8.523 59.236 52.388 1.00 61.07 O
ATOM 2 P C B 700 7.086 59.027 53.075 1.00 62.52 P
ATOM 3 OP1 C B 700 6.153 58.694 51.969 1.00 63.14 O
ATOM 4 OP2 C B 700 6.779 60.173 53.971 1.00 61.25 O
ATOM 5 O5' C B 700 7.301 57.739 53.986 1.00 63.81 O
ATOM 6 C5' C B 700 7.736 56.494 53.405 1.00 66.61 C
ATOM 7 C4' C B 700 7.858 55.429 54.469 1.00 69.10 C
ATOM 8 O4' C B 700 9.051 55.641 55.272 1.00 68.43 O
ATOM 9 C3' C B 700 6.735 55.384 55.493 1.00 70.30 C
ATOM 10 O3' C B 700 5.553 54.765 54.994 1.00 71.50 O
ATOM 11 C2' C B 700 7.386 54.621 56.639 1.00 69.98 C
ATOM 12 O2' C B 700 7.417 53.223 56.436 1.00 70.67 O
ATOM 13 C1' C B 700 8.810 55.190 56.598 1.00 68.70 C
ATOM 14 N1 C B 700 8.969 56.323 57.529 1.00 67.87 N
ATOM 15 C2 C B 700 9.473 56.071 58.811 1.00 67.36 C
ATOM 16 O2 C B 700 9.827 54.924 59.100 1.00 69.13 O
ATOM 17 N3 C B 700 9.567 57.085 59.698 1.00 66.57 N
ATOM 18 C4 C B 700 9.195 58.316 59.344 1.00 65.82 C
ATOM 19 N4 C B 700 9.292 59.282 60.258 1.00 63.83 N
ATOM 20 C5 C B 700 8.704 58.609 58.037 1.00 65.79 C
ATOM 21 C6 C B 700 8.611 57.594 57.169 1.00 66.88 C
ATOM 22 P U B 701 4.121 55.194 55.587 1.00 73.47 P
ATOM 23 OP1 U B 701 3.068 54.569 54.748 1.00 73.93 O
ATOM 24 OP2 U B 701 4.117 56.665 55.790 1.00 73.33 O
ATOM 25 O5' U B 701 4.109 54.513 57.024 1.00 73.64 O
TER
Atoms:
OP1: (8.278,64.406,53.286)
OP2: (9.478,64.208,55.539)
C3': (9.625,59.641,53.184)
C1': (11.845,59.274,53.866)
C5': (10.075,62.040,52.439)
O6: (12.511,59.091,59.827)
O4': (11.795,60.512,53.172)
C8: (11.759,60.759,55.935)
C2: (12.640,56.679,57.229)
C6: (12.454,58.645,58.677)
C5: (12.191,59.339,57.464)
C4: (12.206,58.629,56.281)
P: (9.473,64.012,54.067)
C4': (10.539,60.610,52.452)
C2': (10.573,58.499,53.508)
O2': (10.806,57.660,52.392)
N1: (12.668,57.292,58.453)
N2: (12.836,55.360,57.229)
N3: (12.428,57.311,56.091)
N7: (11.903,60.679,57.232)
N9: (11.933,59.550,55.297)
O5': (9.779,62.478,53.773)
O3': (8.523,59.236,52.388)
OP2: (9.478,64.208,55.539)
C3': (9.625,59.641,53.184)
C1': (11.845,59.274,53.866)
C5': (10.075,62.040,52.439)
O6: (12.511,59.091,59.827)
O4': (11.795,60.512,53.172)
C8: (11.759,60.759,55.935)
C2: (12.640,56.679,57.229)
C6: (12.454,58.645,58.677)
C5: (12.191,59.339,57.464)
C4: (12.206,58.629,56.281)
P: (9.473,64.012,54.067)
C4': (10.539,60.610,52.452)
C2': (10.573,58.499,53.508)
O2': (10.806,57.660,52.392)
N1: (12.668,57.292,58.453)
N2: (12.836,55.360,57.229)
N3: (12.428,57.311,56.091)
N7: (11.903,60.679,57.232)
N9: (11.933,59.550,55.297)
O5': (9.779,62.478,53.773)
O3': (8.523,59.236,52.388)
C2: (9.473,56.071,58.811)
OP1: (6.153,58.694,51.969)
OP2: (6.779,60.173,53.971)
C4: (9.195,58.316,59.344)
O5': (7.301,57.739,53.986)
C3': (6.735,55.384,55.493)
C1': (8.810,55.190,56.598)
O4': (9.051,55.641,55.272)
C5': (7.736,56.494,53.405)
P: (7.086,59.027,53.075)
O2: (9.827,54.924,59.100)
C4': (7.858,55.429,54.469)
C2': (7.386,54.621,56.639)
O2': (7.417,53.223,56.436)
N1: (8.969,56.323,57.529)
N3: (9.567,57.085,59.698)
N4: (9.292,59.282,60.258)
C6: (8.611,57.594,57.169)
C5: (8.704,58.609,58.037)
O3': (5.553,54.765,54.994)
OP1: (6.153,58.694,51.969)
OP2: (6.779,60.173,53.971)
C4: (9.195,58.316,59.344)
O5': (7.301,57.739,53.986)
C3': (6.735,55.384,55.493)
C1': (8.810,55.190,56.598)
O4': (9.051,55.641,55.272)
C5': (7.736,56.494,53.405)
P: (7.086,59.027,53.075)
O2: (9.827,54.924,59.100)
C4': (7.858,55.429,54.469)
C2': (7.386,54.621,56.639)
O2': (7.417,53.223,56.436)
N1: (8.969,56.323,57.529)
N3: (9.567,57.085,59.698)
N4: (9.292,59.282,60.258)
C6: (8.611,57.594,57.169)
C5: (8.704,58.609,58.037)
O3': (5.553,54.765,54.994)
Image (generated by PyMOL):