Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:B42:B40
Extra
PDB:
ATOM 1 O3' C A 41 -161.814 -27.514 33.043 1.00 18.45 O
ATOM 2 P C A 42 -162.695 -28.488 33.961 1.00 17.72 P
ATOM 3 OP1 C A 42 -163.395 -27.638 34.990 1.00 17.72 O
ATOM 4 OP2 C A 42 -161.799 -29.591 34.425 1.00 17.72 O
ATOM 5 O5' C A 42 -163.754 -29.055 32.930 1.00 17.72 O
ATOM 6 C5' C A 42 -164.957 -28.361 32.675 1.00 17.72 C
ATOM 7 C4' C A 42 -165.527 -28.774 31.360 1.00 17.72 C
ATOM 8 O4' C A 42 -164.439 -29.021 30.440 1.00 17.72 O
ATOM 9 C3' C A 42 -166.316 -30.074 31.341 1.00 17.72 C
ATOM 10 O3' C A 42 -167.645 -29.916 31.766 1.00 17.72 O
ATOM 11 C2' C A 42 -166.233 -30.466 29.885 1.00 17.72 C
ATOM 12 O2' C A 42 -167.173 -29.699 29.128 1.00 17.72 O
ATOM 13 C1' C A 42 -164.821 -30.007 29.517 1.00 17.72 C
ATOM 14 N1 C A 42 -163.812 -31.102 29.522 1.00 17.81 N
ATOM 15 C2 C A 42 -163.917 -32.151 28.615 1.00 17.81 C
ATOM 16 O2 C A 42 -164.893 -32.187 27.889 1.00 17.81 O
ATOM 17 N3 C A 42 -163.004 -33.138 28.524 1.00 17.81 N
ATOM 18 C4 C A 42 -161.945 -33.109 29.314 1.00 17.81 C
ATOM 19 N4 C A 42 -161.061 -34.111 29.201 1.00 17.81 N
ATOM 20 C5 C A 42 -161.777 -32.031 30.249 1.00 17.81 C
ATOM 21 C6 C A 42 -162.709 -31.056 30.313 1.00 17.81 C
ATOM 22 P G A 43 -168.071 -30.284 33.256 1.00 10.92 P
ATOM 23 OP1 G A 43 -169.411 -29.671 33.484 1.00 10.92 O
ATOM 24 OP2 G A 43 -166.965 -29.898 34.142 1.00 10.92 O
ATOM 25 O5' G A 43 -168.192 -31.865 33.236 1.00 10.92 O
TER
ATOM 1 O3' U B 39 -159.122 -33.594 32.538 1.00 12.31 O
ATOM 2 P G B 40 -157.767 -34.251 32.021 1.00 40.38 P
ATOM 3 OP1 G B 40 -158.116 -35.308 31.056 1.00 40.38 O
ATOM 4 OP2 G B 40 -156.992 -34.615 33.211 1.00 40.38 O
ATOM 5 O5' G B 40 -157.081 -33.043 31.293 1.00 40.38 O
ATOM 6 C5' G B 40 -157.179 -31.749 31.842 1.00 40.38 C
ATOM 7 C4' G B 40 -156.204 -31.558 32.970 1.00 40.38 C
ATOM 8 O4' G B 40 -155.005 -32.303 32.705 1.00 40.38 O
ATOM 9 C3' G B 40 -155.765 -30.118 33.216 1.00 40.38 C
ATOM 10 O3' G B 40 -156.436 -29.561 34.313 1.00 40.38 O
ATOM 11 C2' G B 40 -154.253 -30.159 33.419 1.00 40.38 C
ATOM 12 O2' G B 40 -153.917 -29.760 34.733 1.00 40.38 O
ATOM 13 C1' G B 40 -153.892 -31.635 33.227 1.00 40.38 C
ATOM 14 N9 G B 40 -152.747 -31.833 32.319 1.00 42.60 N
ATOM 15 C8 G B 40 -152.726 -32.486 31.099 1.00 42.60 C
ATOM 16 N7 G B 40 -151.536 -32.507 30.551 1.00 42.60 N
ATOM 17 C5 G B 40 -150.727 -31.837 31.483 1.00 42.60 C
ATOM 18 C6 G B 40 -149.330 -31.535 31.477 1.00 42.60 C
ATOM 19 O6 G B 40 -148.498 -31.807 30.599 1.00 42.60 O
ATOM 20 N1 G B 40 -148.912 -30.846 32.626 1.00 42.60 N
ATOM 21 C2 G B 40 -149.726 -30.479 33.675 1.00 42.60 C
ATOM 22 N2 G B 40 -149.140 -29.824 34.702 1.00 42.60 N
ATOM 23 N3 G B 40 -151.032 -30.752 33.689 1.00 42.60 N
ATOM 24 C4 G B 40 -151.459 -31.424 32.581 1.00 42.60 C
ATOM 25 P C B 41 -156.631 -27.992 34.404 1.00 18.45 P
ATOM 26 OP1 C B 41 -155.268 -27.386 34.336 1.00 18.45 O
ATOM 27 OP2 C B 41 -157.491 -27.709 35.593 1.00 18.45 O
ATOM 28 O5' C B 41 -157.446 -27.690 33.069 1.00 18.45 O
TER
ATOM 2 P C A 42 -162.695 -28.488 33.961 1.00 17.72 P
ATOM 3 OP1 C A 42 -163.395 -27.638 34.990 1.00 17.72 O
ATOM 4 OP2 C A 42 -161.799 -29.591 34.425 1.00 17.72 O
ATOM 5 O5' C A 42 -163.754 -29.055 32.930 1.00 17.72 O
ATOM 6 C5' C A 42 -164.957 -28.361 32.675 1.00 17.72 C
ATOM 7 C4' C A 42 -165.527 -28.774 31.360 1.00 17.72 C
ATOM 8 O4' C A 42 -164.439 -29.021 30.440 1.00 17.72 O
ATOM 9 C3' C A 42 -166.316 -30.074 31.341 1.00 17.72 C
ATOM 10 O3' C A 42 -167.645 -29.916 31.766 1.00 17.72 O
ATOM 11 C2' C A 42 -166.233 -30.466 29.885 1.00 17.72 C
ATOM 12 O2' C A 42 -167.173 -29.699 29.128 1.00 17.72 O
ATOM 13 C1' C A 42 -164.821 -30.007 29.517 1.00 17.72 C
ATOM 14 N1 C A 42 -163.812 -31.102 29.522 1.00 17.81 N
ATOM 15 C2 C A 42 -163.917 -32.151 28.615 1.00 17.81 C
ATOM 16 O2 C A 42 -164.893 -32.187 27.889 1.00 17.81 O
ATOM 17 N3 C A 42 -163.004 -33.138 28.524 1.00 17.81 N
ATOM 18 C4 C A 42 -161.945 -33.109 29.314 1.00 17.81 C
ATOM 19 N4 C A 42 -161.061 -34.111 29.201 1.00 17.81 N
ATOM 20 C5 C A 42 -161.777 -32.031 30.249 1.00 17.81 C
ATOM 21 C6 C A 42 -162.709 -31.056 30.313 1.00 17.81 C
ATOM 22 P G A 43 -168.071 -30.284 33.256 1.00 10.92 P
ATOM 23 OP1 G A 43 -169.411 -29.671 33.484 1.00 10.92 O
ATOM 24 OP2 G A 43 -166.965 -29.898 34.142 1.00 10.92 O
ATOM 25 O5' G A 43 -168.192 -31.865 33.236 1.00 10.92 O
TER
ATOM 1 O3' U B 39 -159.122 -33.594 32.538 1.00 12.31 O
ATOM 2 P G B 40 -157.767 -34.251 32.021 1.00 40.38 P
ATOM 3 OP1 G B 40 -158.116 -35.308 31.056 1.00 40.38 O
ATOM 4 OP2 G B 40 -156.992 -34.615 33.211 1.00 40.38 O
ATOM 5 O5' G B 40 -157.081 -33.043 31.293 1.00 40.38 O
ATOM 6 C5' G B 40 -157.179 -31.749 31.842 1.00 40.38 C
ATOM 7 C4' G B 40 -156.204 -31.558 32.970 1.00 40.38 C
ATOM 8 O4' G B 40 -155.005 -32.303 32.705 1.00 40.38 O
ATOM 9 C3' G B 40 -155.765 -30.118 33.216 1.00 40.38 C
ATOM 10 O3' G B 40 -156.436 -29.561 34.313 1.00 40.38 O
ATOM 11 C2' G B 40 -154.253 -30.159 33.419 1.00 40.38 C
ATOM 12 O2' G B 40 -153.917 -29.760 34.733 1.00 40.38 O
ATOM 13 C1' G B 40 -153.892 -31.635 33.227 1.00 40.38 C
ATOM 14 N9 G B 40 -152.747 -31.833 32.319 1.00 42.60 N
ATOM 15 C8 G B 40 -152.726 -32.486 31.099 1.00 42.60 C
ATOM 16 N7 G B 40 -151.536 -32.507 30.551 1.00 42.60 N
ATOM 17 C5 G B 40 -150.727 -31.837 31.483 1.00 42.60 C
ATOM 18 C6 G B 40 -149.330 -31.535 31.477 1.00 42.60 C
ATOM 19 O6 G B 40 -148.498 -31.807 30.599 1.00 42.60 O
ATOM 20 N1 G B 40 -148.912 -30.846 32.626 1.00 42.60 N
ATOM 21 C2 G B 40 -149.726 -30.479 33.675 1.00 42.60 C
ATOM 22 N2 G B 40 -149.140 -29.824 34.702 1.00 42.60 N
ATOM 23 N3 G B 40 -151.032 -30.752 33.689 1.00 42.60 N
ATOM 24 C4 G B 40 -151.459 -31.424 32.581 1.00 42.60 C
ATOM 25 P C B 41 -156.631 -27.992 34.404 1.00 18.45 P
ATOM 26 OP1 C B 41 -155.268 -27.386 34.336 1.00 18.45 O
ATOM 27 OP2 C B 41 -157.491 -27.709 35.593 1.00 18.45 O
ATOM 28 O5' C B 41 -157.446 -27.690 33.069 1.00 18.45 O
TER
Atoms:
C2: (-163.917,-32.151,28.615)
OP1: (-163.395,-27.638,34.990)
OP2: (-161.799,-29.591,34.425)
C4: (-161.945,-33.109,29.314)
O5': (-163.754,-29.055,32.930)
C3': (-166.316,-30.074,31.341)
C1': (-164.821,-30.007,29.517)
O4': (-164.439,-29.021,30.440)
C5': (-164.957,-28.361,32.675)
P: (-162.695,-28.488,33.961)
O2: (-164.893,-32.187,27.889)
C4': (-165.527,-28.774,31.360)
C2': (-166.233,-30.466,29.885)
O2': (-167.173,-29.699,29.128)
N1: (-163.812,-31.102,29.522)
N3: (-163.004,-33.138,28.524)
N4: (-161.061,-34.111,29.201)
C6: (-162.709,-31.056,30.313)
C5: (-161.777,-32.031,30.249)
O3': (-167.645,-29.916,31.766)
OP1: (-163.395,-27.638,34.990)
OP2: (-161.799,-29.591,34.425)
C4: (-161.945,-33.109,29.314)
O5': (-163.754,-29.055,32.930)
C3': (-166.316,-30.074,31.341)
C1': (-164.821,-30.007,29.517)
O4': (-164.439,-29.021,30.440)
C5': (-164.957,-28.361,32.675)
P: (-162.695,-28.488,33.961)
O2: (-164.893,-32.187,27.889)
C4': (-165.527,-28.774,31.360)
C2': (-166.233,-30.466,29.885)
O2': (-167.173,-29.699,29.128)
N1: (-163.812,-31.102,29.522)
N3: (-163.004,-33.138,28.524)
N4: (-161.061,-34.111,29.201)
C6: (-162.709,-31.056,30.313)
C5: (-161.777,-32.031,30.249)
O3': (-167.645,-29.916,31.766)
OP1: (-158.116,-35.308,31.056)
OP2: (-156.992,-34.615,33.211)
C3': (-155.765,-30.118,33.216)
C1': (-153.892,-31.635,33.227)
C5': (-157.179,-31.749,31.842)
O6: (-148.498,-31.807,30.599)
O4': (-155.005,-32.303,32.705)
C8: (-152.726,-32.486,31.099)
C2: (-149.726,-30.479,33.675)
C6: (-149.330,-31.535,31.477)
C5: (-150.727,-31.837,31.483)
C4: (-151.459,-31.424,32.581)
P: (-157.767,-34.251,32.021)
C4': (-156.204,-31.558,32.970)
C2': (-154.253,-30.159,33.419)
O2': (-153.917,-29.760,34.733)
N1: (-148.912,-30.846,32.626)
N2: (-149.140,-29.824,34.702)
N3: (-151.032,-30.752,33.689)
N7: (-151.536,-32.507,30.551)
N9: (-152.747,-31.833,32.319)
O5': (-157.081,-33.043,31.293)
O3': (-156.436,-29.561,34.313)
OP2: (-156.992,-34.615,33.211)
C3': (-155.765,-30.118,33.216)
C1': (-153.892,-31.635,33.227)
C5': (-157.179,-31.749,31.842)
O6: (-148.498,-31.807,30.599)
O4': (-155.005,-32.303,32.705)
C8: (-152.726,-32.486,31.099)
C2: (-149.726,-30.479,33.675)
C6: (-149.330,-31.535,31.477)
C5: (-150.727,-31.837,31.483)
C4: (-151.459,-31.424,32.581)
P: (-157.767,-34.251,32.021)
C4': (-156.204,-31.558,32.970)
C2': (-154.253,-30.159,33.419)
O2': (-153.917,-29.760,34.733)
N1: (-148.912,-30.846,32.626)
N2: (-149.140,-29.824,34.702)
N3: (-151.032,-30.752,33.689)
N7: (-151.536,-32.507,30.551)
N9: (-152.747,-31.833,32.319)
O5': (-157.081,-33.043,31.293)
O3': (-156.436,-29.561,34.313)
Image (generated by PyMOL):