Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YHQ:0559:0560
Extra
PDB:
ATOM 1 O3' C A 558 -4.397 98.546 121.956 1.00 66.66 O
ATOM 2 P C A 559 -4.852 97.653 123.217 1.00 68.74 P
ATOM 3 OP1 C A 559 -4.325 98.316 124.435 1.00 67.95 O
ATOM 4 OP2 C A 559 -4.512 96.228 122.949 1.00 65.58 O
ATOM 5 O5' C A 559 -6.437 97.790 123.228 1.00 69.67 O
ATOM 6 C5' C A 559 -7.075 99.070 123.403 1.00 71.92 C
ATOM 7 C4' C A 559 -8.567 98.932 123.214 1.00 74.11 C
ATOM 8 O4' C A 559 -8.834 98.506 121.850 1.00 73.23 O
ATOM 9 C3' C A 559 -9.222 97.859 124.072 1.00 76.40 C
ATOM 10 O3' C A 559 -9.506 98.318 125.395 1.00 79.01 O
ATOM 11 C2' C A 559 -10.468 97.513 123.266 1.00 75.12 C
ATOM 12 O2' C A 559 -11.513 98.452 123.435 1.00 75.65 O
ATOM 13 C1' C A 559 -9.928 97.600 121.835 1.00 72.80 C
ATOM 14 N1 C A 559 -9.458 96.307 121.295 1.00 71.00 N
ATOM 15 C2 C A 559 -10.372 95.479 120.615 1.00 70.86 C
ATOM 16 O2 C A 559 -11.550 95.851 120.488 1.00 71.87 O
ATOM 17 N3 C A 559 -9.943 94.295 120.113 1.00 69.29 N
ATOM 18 C4 C A 559 -8.668 93.926 120.267 1.00 67.77 C
ATOM 19 N4 C A 559 -8.290 92.752 119.752 1.00 66.32 N
ATOM 20 C5 C A 559 -7.723 94.744 120.955 1.00 67.75 C
ATOM 21 C6 C A 559 -8.156 95.913 121.448 1.00 69.20 C
ATOM 22 P G A 560 -9.338 97.311 126.641 1.00 81.18 P
ATOM 23 OP1 G A 560 -9.776 98.053 127.849 1.00 80.75 O
ATOM 24 OP2 G A 560 -7.975 96.719 126.603 1.00 80.61 O
ATOM 25 O5' G A 560 -10.396 96.155 126.340 1.00 81.38 O
TER
ATOM 1 O3' C B 559 -9.506 98.318 125.395 1.00 79.01 O
ATOM 2 P G B 560 -9.338 97.311 126.641 1.00 81.18 P
ATOM 3 OP1 G B 560 -9.776 98.053 127.849 1.00 80.75 O
ATOM 4 OP2 G B 560 -7.975 96.719 126.603 1.00 80.61 O
ATOM 5 O5' G B 560 -10.396 96.155 126.340 1.00 81.38 O
ATOM 6 C5' G B 560 -11.812 96.441 126.319 1.00 82.63 C
ATOM 7 C4' G B 560 -12.591 95.248 125.806 1.00 82.90 C
ATOM 8 O4' G B 560 -12.230 94.990 124.424 1.00 82.44 O
ATOM 9 C3' G B 560 -12.334 93.923 126.504 1.00 83.28 C
ATOM 10 O3' G B 560 -13.056 93.796 127.725 1.00 85.00 O
ATOM 11 C2' G B 560 -12.780 92.917 125.451 1.00 82.25 C
ATOM 12 O2' G B 560 -14.182 92.754 125.393 1.00 82.13 O
ATOM 13 C1' G B 560 -12.283 93.592 124.170 1.00 81.58 C
ATOM 14 N9 G B 560 -10.948 93.138 123.787 1.00 79.91 N
ATOM 15 C8 G B 560 -9.748 93.767 124.034 1.00 78.35 C
ATOM 16 N7 G B 560 -8.718 93.095 123.595 1.00 77.67 N
ATOM 17 C5 G B 560 -9.268 91.958 123.016 1.00 78.10 C
ATOM 18 C6 G B 560 -8.641 90.852 122.378 1.00 78.62 C
ATOM 19 O6 G B 560 -7.434 90.649 122.191 1.00 79.68 O
ATOM 20 N1 G B 560 -9.575 89.919 121.938 1.00 77.69 N
ATOM 21 C2 G B 560 -10.932 90.029 122.091 1.00 77.53 C
ATOM 22 N2 G B 560 -11.659 89.018 121.603 1.00 76.61 N
ATOM 23 N3 G B 560 -11.530 91.051 122.681 1.00 77.72 N
ATOM 24 C4 G B 560 -10.643 91.972 123.119 1.00 78.37 C
ATOM 25 P A B 561 -12.496 92.831 128.885 1.00 86.86 P
ATOM 26 OP1 A B 561 -13.429 92.956 130.033 1.00 87.33 O
ATOM 27 OP2 A B 561 -11.047 93.104 129.087 1.00 86.10 O
ATOM 28 O5' A B 561 -12.649 91.364 128.280 1.00 84.75 O
TER
ATOM 2 P C A 559 -4.852 97.653 123.217 1.00 68.74 P
ATOM 3 OP1 C A 559 -4.325 98.316 124.435 1.00 67.95 O
ATOM 4 OP2 C A 559 -4.512 96.228 122.949 1.00 65.58 O
ATOM 5 O5' C A 559 -6.437 97.790 123.228 1.00 69.67 O
ATOM 6 C5' C A 559 -7.075 99.070 123.403 1.00 71.92 C
ATOM 7 C4' C A 559 -8.567 98.932 123.214 1.00 74.11 C
ATOM 8 O4' C A 559 -8.834 98.506 121.850 1.00 73.23 O
ATOM 9 C3' C A 559 -9.222 97.859 124.072 1.00 76.40 C
ATOM 10 O3' C A 559 -9.506 98.318 125.395 1.00 79.01 O
ATOM 11 C2' C A 559 -10.468 97.513 123.266 1.00 75.12 C
ATOM 12 O2' C A 559 -11.513 98.452 123.435 1.00 75.65 O
ATOM 13 C1' C A 559 -9.928 97.600 121.835 1.00 72.80 C
ATOM 14 N1 C A 559 -9.458 96.307 121.295 1.00 71.00 N
ATOM 15 C2 C A 559 -10.372 95.479 120.615 1.00 70.86 C
ATOM 16 O2 C A 559 -11.550 95.851 120.488 1.00 71.87 O
ATOM 17 N3 C A 559 -9.943 94.295 120.113 1.00 69.29 N
ATOM 18 C4 C A 559 -8.668 93.926 120.267 1.00 67.77 C
ATOM 19 N4 C A 559 -8.290 92.752 119.752 1.00 66.32 N
ATOM 20 C5 C A 559 -7.723 94.744 120.955 1.00 67.75 C
ATOM 21 C6 C A 559 -8.156 95.913 121.448 1.00 69.20 C
ATOM 22 P G A 560 -9.338 97.311 126.641 1.00 81.18 P
ATOM 23 OP1 G A 560 -9.776 98.053 127.849 1.00 80.75 O
ATOM 24 OP2 G A 560 -7.975 96.719 126.603 1.00 80.61 O
ATOM 25 O5' G A 560 -10.396 96.155 126.340 1.00 81.38 O
TER
ATOM 1 O3' C B 559 -9.506 98.318 125.395 1.00 79.01 O
ATOM 2 P G B 560 -9.338 97.311 126.641 1.00 81.18 P
ATOM 3 OP1 G B 560 -9.776 98.053 127.849 1.00 80.75 O
ATOM 4 OP2 G B 560 -7.975 96.719 126.603 1.00 80.61 O
ATOM 5 O5' G B 560 -10.396 96.155 126.340 1.00 81.38 O
ATOM 6 C5' G B 560 -11.812 96.441 126.319 1.00 82.63 C
ATOM 7 C4' G B 560 -12.591 95.248 125.806 1.00 82.90 C
ATOM 8 O4' G B 560 -12.230 94.990 124.424 1.00 82.44 O
ATOM 9 C3' G B 560 -12.334 93.923 126.504 1.00 83.28 C
ATOM 10 O3' G B 560 -13.056 93.796 127.725 1.00 85.00 O
ATOM 11 C2' G B 560 -12.780 92.917 125.451 1.00 82.25 C
ATOM 12 O2' G B 560 -14.182 92.754 125.393 1.00 82.13 O
ATOM 13 C1' G B 560 -12.283 93.592 124.170 1.00 81.58 C
ATOM 14 N9 G B 560 -10.948 93.138 123.787 1.00 79.91 N
ATOM 15 C8 G B 560 -9.748 93.767 124.034 1.00 78.35 C
ATOM 16 N7 G B 560 -8.718 93.095 123.595 1.00 77.67 N
ATOM 17 C5 G B 560 -9.268 91.958 123.016 1.00 78.10 C
ATOM 18 C6 G B 560 -8.641 90.852 122.378 1.00 78.62 C
ATOM 19 O6 G B 560 -7.434 90.649 122.191 1.00 79.68 O
ATOM 20 N1 G B 560 -9.575 89.919 121.938 1.00 77.69 N
ATOM 21 C2 G B 560 -10.932 90.029 122.091 1.00 77.53 C
ATOM 22 N2 G B 560 -11.659 89.018 121.603 1.00 76.61 N
ATOM 23 N3 G B 560 -11.530 91.051 122.681 1.00 77.72 N
ATOM 24 C4 G B 560 -10.643 91.972 123.119 1.00 78.37 C
ATOM 25 P A B 561 -12.496 92.831 128.885 1.00 86.86 P
ATOM 26 OP1 A B 561 -13.429 92.956 130.033 1.00 87.33 O
ATOM 27 OP2 A B 561 -11.047 93.104 129.087 1.00 86.10 O
ATOM 28 O5' A B 561 -12.649 91.364 128.280 1.00 84.75 O
TER
Atoms:
C2: (-10.372,95.479,120.615)
OP1: (-4.325,98.316,124.435)
OP2: (-4.512,96.228,122.949)
C4: (-8.668,93.926,120.267)
O5': (-6.437,97.790,123.228)
C3': (-9.222,97.859,124.072)
C1': (-9.928,97.600,121.835)
O4': (-8.834,98.506,121.850)
C5': (-7.075,99.070,123.403)
P: (-4.852,97.653,123.217)
O2: (-11.550,95.851,120.488)
C4': (-8.567,98.932,123.214)
C2': (-10.468,97.513,123.266)
O2': (-11.513,98.452,123.435)
N1: (-9.458,96.307,121.295)
N3: (-9.943,94.295,120.113)
N4: (-8.290,92.752,119.752)
C6: (-8.156,95.913,121.448)
C5: (-7.723,94.744,120.955)
O3': (-9.506,98.318,125.395)
OP1: (-4.325,98.316,124.435)
OP2: (-4.512,96.228,122.949)
C4: (-8.668,93.926,120.267)
O5': (-6.437,97.790,123.228)
C3': (-9.222,97.859,124.072)
C1': (-9.928,97.600,121.835)
O4': (-8.834,98.506,121.850)
C5': (-7.075,99.070,123.403)
P: (-4.852,97.653,123.217)
O2: (-11.550,95.851,120.488)
C4': (-8.567,98.932,123.214)
C2': (-10.468,97.513,123.266)
O2': (-11.513,98.452,123.435)
N1: (-9.458,96.307,121.295)
N3: (-9.943,94.295,120.113)
N4: (-8.290,92.752,119.752)
C6: (-8.156,95.913,121.448)
C5: (-7.723,94.744,120.955)
O3': (-9.506,98.318,125.395)
OP1: (-9.776,98.053,127.849)
OP2: (-7.975,96.719,126.603)
C3': (-12.334,93.923,126.504)
C1': (-12.283,93.592,124.170)
C5': (-11.812,96.441,126.319)
O6: (-7.434,90.649,122.191)
O4': (-12.230,94.990,124.424)
C8: (-9.748,93.767,124.034)
C2: (-10.932,90.029,122.091)
C6: (-8.641,90.852,122.378)
C5: (-9.268,91.958,123.016)
C4: (-10.643,91.972,123.119)
P: (-9.338,97.311,126.641)
C4': (-12.591,95.248,125.806)
C2': (-12.780,92.917,125.451)
O2': (-14.182,92.754,125.393)
N1: (-9.575,89.919,121.938)
N2: (-11.659,89.018,121.603)
N3: (-11.530,91.051,122.681)
N7: (-8.718,93.095,123.595)
N9: (-10.948,93.138,123.787)
O5': (-10.396,96.155,126.340)
O3': (-13.056,93.796,127.725)
OP2: (-7.975,96.719,126.603)
C3': (-12.334,93.923,126.504)
C1': (-12.283,93.592,124.170)
C5': (-11.812,96.441,126.319)
O6: (-7.434,90.649,122.191)
O4': (-12.230,94.990,124.424)
C8: (-9.748,93.767,124.034)
C2: (-10.932,90.029,122.091)
C6: (-8.641,90.852,122.378)
C5: (-9.268,91.958,123.016)
C4: (-10.643,91.972,123.119)
P: (-9.338,97.311,126.641)
C4': (-12.591,95.248,125.806)
C2': (-12.780,92.917,125.451)
O2': (-14.182,92.754,125.393)
N1: (-9.575,89.919,121.938)
N2: (-11.659,89.018,121.603)
N3: (-11.530,91.051,122.681)
N7: (-8.718,93.095,123.595)
N9: (-10.948,93.138,123.787)
O5': (-10.396,96.155,126.340)
O3': (-13.056,93.796,127.725)
Image (generated by PyMOL):