Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01216:01217
Extra
PDB:
ATOM 1 O3' C A1215 9.622 100.388 116.397 1.00 48.44 O
ATOM 2 P C A1216 9.797 100.471 114.805 1.00 46.59 P
ATOM 3 OP1 C A1216 8.643 101.229 114.274 1.00 47.34 O
ATOM 4 OP2 C A1216 10.096 99.118 114.277 1.00 46.13 O
ATOM 5 O5' C A1216 11.092 101.373 114.623 1.00 49.84 O
ATOM 6 C5' C A1216 11.155 102.703 115.169 1.00 49.24 C
ATOM 7 C4' C A1216 12.575 103.216 115.118 1.00 50.47 C
ATOM 8 O4' C A1216 13.421 102.429 115.999 1.00 51.44 O
ATOM 9 C3' C A1216 13.264 103.111 113.766 1.00 50.00 C
ATOM 10 O3' C A1216 12.905 104.204 112.934 1.00 48.81 O
ATOM 11 C2' C A1216 14.736 103.159 114.151 1.00 50.68 C
ATOM 12 O2' C A1216 15.171 104.477 114.425 1.00 51.80 O
ATOM 13 C1' C A1216 14.732 102.364 115.459 1.00 50.86 C
ATOM 14 N1 C A1216 15.132 100.952 115.311 1.00 49.62 N
ATOM 15 C2 C A1216 16.482 100.657 115.111 1.00 49.59 C
ATOM 16 O2 C A1216 17.294 101.587 115.039 1.00 51.52 O
ATOM 17 N3 C A1216 16.869 99.374 114.995 1.00 48.09 N
ATOM 18 C4 C A1216 15.967 98.401 115.059 1.00 47.68 C
ATOM 19 N4 C A1216 16.396 97.150 114.932 1.00 49.19 N
ATOM 20 C5 C A1216 14.586 98.666 115.254 1.00 48.75 C
ATOM 21 C6 C A1216 14.214 99.944 115.374 1.00 49.10 C
ATOM 22 P G A1217 12.898 104.027 111.343 1.00 47.40 P
ATOM 23 OP1 G A1217 12.707 105.388 110.772 1.00 45.43 O
ATOM 24 OP2 G A1217 11.957 102.929 110.985 1.00 44.99 O
ATOM 25 O5' G A1217 14.380 103.556 111.010 1.00 47.88 O
TER
ATOM 1 O3' C B1216 12.905 104.204 112.934 1.00 48.81 O
ATOM 2 P G B1217 12.898 104.027 111.343 1.00 47.40 P
ATOM 3 OP1 G B1217 12.707 105.388 110.772 1.00 45.43 O
ATOM 4 OP2 G B1217 11.957 102.929 110.985 1.00 44.99 O
ATOM 5 O5' G B1217 14.380 103.556 111.010 1.00 47.88 O
ATOM 6 C5' G B1217 15.501 104.453 111.166 1.00 47.11 C
ATOM 7 C4' G B1217 16.785 103.712 110.900 1.00 45.44 C
ATOM 8 O4' G B1217 16.917 102.645 111.873 1.00 45.34 O
ATOM 9 C3' G B1217 16.817 103.018 109.549 1.00 44.85 C
ATOM 10 O3' G B1217 17.286 103.909 108.546 1.00 43.29 O
ATOM 11 C2' G B1217 17.764 101.853 109.788 1.00 45.36 C
ATOM 12 O2' G B1217 19.118 102.239 109.686 1.00 46.65 O
ATOM 13 C1' G B1217 17.434 101.488 111.240 1.00 46.03 C
ATOM 14 N9 G B1217 16.452 100.421 111.394 1.00 46.04 N
ATOM 15 C8 G B1217 15.085 100.546 111.389 1.00 47.02 C
ATOM 16 N7 G B1217 14.467 99.413 111.582 1.00 48.06 N
ATOM 17 C5 G B1217 15.489 98.486 111.720 1.00 47.82 C
ATOM 18 C6 G B1217 15.436 97.089 111.960 1.00 49.00 C
ATOM 19 O6 G B1217 14.442 96.371 112.122 1.00 50.67 O
ATOM 20 N1 G B1217 16.711 96.533 112.016 1.00 48.55 N
ATOM 21 C2 G B1217 17.884 97.233 111.872 1.00 48.03 C
ATOM 22 N2 G B1217 19.012 96.525 111.961 1.00 48.02 N
ATOM 23 N3 G B1217 17.945 98.534 111.658 1.00 47.48 N
ATOM 24 C4 G B1217 16.720 99.093 111.594 1.00 47.06 C
ATOM 25 P A B1218 16.635 103.878 107.080 1.00 43.16 P
ATOM 26 OP1 A B1218 16.694 105.259 106.534 1.00 41.79 O
ATOM 27 OP2 A B1218 15.331 103.168 107.134 1.00 44.77 O
ATOM 28 O5' A B1218 17.634 102.965 106.248 1.00 43.11 O
TER
ATOM 2 P C A1216 9.797 100.471 114.805 1.00 46.59 P
ATOM 3 OP1 C A1216 8.643 101.229 114.274 1.00 47.34 O
ATOM 4 OP2 C A1216 10.096 99.118 114.277 1.00 46.13 O
ATOM 5 O5' C A1216 11.092 101.373 114.623 1.00 49.84 O
ATOM 6 C5' C A1216 11.155 102.703 115.169 1.00 49.24 C
ATOM 7 C4' C A1216 12.575 103.216 115.118 1.00 50.47 C
ATOM 8 O4' C A1216 13.421 102.429 115.999 1.00 51.44 O
ATOM 9 C3' C A1216 13.264 103.111 113.766 1.00 50.00 C
ATOM 10 O3' C A1216 12.905 104.204 112.934 1.00 48.81 O
ATOM 11 C2' C A1216 14.736 103.159 114.151 1.00 50.68 C
ATOM 12 O2' C A1216 15.171 104.477 114.425 1.00 51.80 O
ATOM 13 C1' C A1216 14.732 102.364 115.459 1.00 50.86 C
ATOM 14 N1 C A1216 15.132 100.952 115.311 1.00 49.62 N
ATOM 15 C2 C A1216 16.482 100.657 115.111 1.00 49.59 C
ATOM 16 O2 C A1216 17.294 101.587 115.039 1.00 51.52 O
ATOM 17 N3 C A1216 16.869 99.374 114.995 1.00 48.09 N
ATOM 18 C4 C A1216 15.967 98.401 115.059 1.00 47.68 C
ATOM 19 N4 C A1216 16.396 97.150 114.932 1.00 49.19 N
ATOM 20 C5 C A1216 14.586 98.666 115.254 1.00 48.75 C
ATOM 21 C6 C A1216 14.214 99.944 115.374 1.00 49.10 C
ATOM 22 P G A1217 12.898 104.027 111.343 1.00 47.40 P
ATOM 23 OP1 G A1217 12.707 105.388 110.772 1.00 45.43 O
ATOM 24 OP2 G A1217 11.957 102.929 110.985 1.00 44.99 O
ATOM 25 O5' G A1217 14.380 103.556 111.010 1.00 47.88 O
TER
ATOM 1 O3' C B1216 12.905 104.204 112.934 1.00 48.81 O
ATOM 2 P G B1217 12.898 104.027 111.343 1.00 47.40 P
ATOM 3 OP1 G B1217 12.707 105.388 110.772 1.00 45.43 O
ATOM 4 OP2 G B1217 11.957 102.929 110.985 1.00 44.99 O
ATOM 5 O5' G B1217 14.380 103.556 111.010 1.00 47.88 O
ATOM 6 C5' G B1217 15.501 104.453 111.166 1.00 47.11 C
ATOM 7 C4' G B1217 16.785 103.712 110.900 1.00 45.44 C
ATOM 8 O4' G B1217 16.917 102.645 111.873 1.00 45.34 O
ATOM 9 C3' G B1217 16.817 103.018 109.549 1.00 44.85 C
ATOM 10 O3' G B1217 17.286 103.909 108.546 1.00 43.29 O
ATOM 11 C2' G B1217 17.764 101.853 109.788 1.00 45.36 C
ATOM 12 O2' G B1217 19.118 102.239 109.686 1.00 46.65 O
ATOM 13 C1' G B1217 17.434 101.488 111.240 1.00 46.03 C
ATOM 14 N9 G B1217 16.452 100.421 111.394 1.00 46.04 N
ATOM 15 C8 G B1217 15.085 100.546 111.389 1.00 47.02 C
ATOM 16 N7 G B1217 14.467 99.413 111.582 1.00 48.06 N
ATOM 17 C5 G B1217 15.489 98.486 111.720 1.00 47.82 C
ATOM 18 C6 G B1217 15.436 97.089 111.960 1.00 49.00 C
ATOM 19 O6 G B1217 14.442 96.371 112.122 1.00 50.67 O
ATOM 20 N1 G B1217 16.711 96.533 112.016 1.00 48.55 N
ATOM 21 C2 G B1217 17.884 97.233 111.872 1.00 48.03 C
ATOM 22 N2 G B1217 19.012 96.525 111.961 1.00 48.02 N
ATOM 23 N3 G B1217 17.945 98.534 111.658 1.00 47.48 N
ATOM 24 C4 G B1217 16.720 99.093 111.594 1.00 47.06 C
ATOM 25 P A B1218 16.635 103.878 107.080 1.00 43.16 P
ATOM 26 OP1 A B1218 16.694 105.259 106.534 1.00 41.79 O
ATOM 27 OP2 A B1218 15.331 103.168 107.134 1.00 44.77 O
ATOM 28 O5' A B1218 17.634 102.965 106.248 1.00 43.11 O
TER
Atoms:
C2: (16.482,100.657,115.111)
OP1: (8.643,101.229,114.274)
OP2: (10.096,99.118,114.277)
C4: (15.967,98.401,115.059)
O5': (11.092,101.373,114.623)
C3': (13.264,103.111,113.766)
C1': (14.732,102.364,115.459)
O4': (13.421,102.429,115.999)
C5': (11.155,102.703,115.169)
P: (9.797,100.471,114.805)
O2: (17.294,101.587,115.039)
C4': (12.575,103.216,115.118)
C2': (14.736,103.159,114.151)
O2': (15.171,104.477,114.425)
N1: (15.132,100.952,115.311)
N3: (16.869,99.374,114.995)
N4: (16.396,97.150,114.932)
C6: (14.214,99.944,115.374)
C5: (14.586,98.666,115.254)
O3': (12.905,104.204,112.934)
OP1: (8.643,101.229,114.274)
OP2: (10.096,99.118,114.277)
C4: (15.967,98.401,115.059)
O5': (11.092,101.373,114.623)
C3': (13.264,103.111,113.766)
C1': (14.732,102.364,115.459)
O4': (13.421,102.429,115.999)
C5': (11.155,102.703,115.169)
P: (9.797,100.471,114.805)
O2: (17.294,101.587,115.039)
C4': (12.575,103.216,115.118)
C2': (14.736,103.159,114.151)
O2': (15.171,104.477,114.425)
N1: (15.132,100.952,115.311)
N3: (16.869,99.374,114.995)
N4: (16.396,97.150,114.932)
C6: (14.214,99.944,115.374)
C5: (14.586,98.666,115.254)
O3': (12.905,104.204,112.934)
OP1: (12.707,105.388,110.772)
OP2: (11.957,102.929,110.985)
C3': (16.817,103.018,109.549)
C1': (17.434,101.488,111.240)
C5': (15.501,104.453,111.166)
O6: (14.442,96.371,112.122)
O4': (16.917,102.645,111.873)
C8: (15.085,100.546,111.389)
C2: (17.884,97.233,111.872)
C6: (15.436,97.089,111.960)
C5: (15.489,98.486,111.720)
C4: (16.720,99.093,111.594)
P: (12.898,104.027,111.343)
C4': (16.785,103.712,110.900)
C2': (17.764,101.853,109.788)
O2': (19.118,102.239,109.686)
N1: (16.711,96.533,112.016)
N2: (19.012,96.525,111.961)
N3: (17.945,98.534,111.658)
N7: (14.467,99.413,111.582)
N9: (16.452,100.421,111.394)
O5': (14.380,103.556,111.010)
O3': (17.286,103.909,108.546)
OP2: (11.957,102.929,110.985)
C3': (16.817,103.018,109.549)
C1': (17.434,101.488,111.240)
C5': (15.501,104.453,111.166)
O6: (14.442,96.371,112.122)
O4': (16.917,102.645,111.873)
C8: (15.085,100.546,111.389)
C2: (17.884,97.233,111.872)
C6: (15.436,97.089,111.960)
C5: (15.489,98.486,111.720)
C4: (16.720,99.093,111.594)
P: (12.898,104.027,111.343)
C4': (16.785,103.712,110.900)
C2': (17.764,101.853,109.788)
O2': (19.118,102.239,109.686)
N1: (16.711,96.533,112.016)
N2: (19.012,96.525,111.961)
N3: (17.945,98.534,111.658)
N7: (14.467,99.413,111.582)
N9: (16.452,100.421,111.394)
O5': (14.380,103.556,111.010)
O3': (17.286,103.909,108.546)
Image (generated by PyMOL):