Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DH3:H7:H8
Extra
PDB:
ATOM 1 O3' U A 6 6.993 -4.312 2.022 1.00 41.42 O
ATOM 2 P C A 7 6.842 -4.587 3.615 1.00 44.00 P
ATOM 3 OP1 C A 7 6.591 -3.243 4.234 1.00 41.99 O
ATOM 4 OP2 C A 7 7.946 -5.465 4.098 1.00 41.99 O
ATOM 5 O5' C A 7 5.574 -5.568 3.671 1.00 42.51 O
ATOM 6 C5' C A 7 4.218 -5.169 3.470 1.00 43.13 C
ATOM 7 C4' C A 7 3.444 -6.428 3.823 1.00 44.41 C
ATOM 8 O4' C A 7 3.744 -7.487 2.878 1.00 44.31 O
ATOM 9 C3' C A 7 3.889 -7.067 5.131 1.00 45.33 C
ATOM 10 O3' C A 7 3.331 -6.406 6.265 1.00 47.14 O
ATOM 11 C2' C A 7 3.368 -8.479 4.980 1.00 44.38 C
ATOM 12 O2' C A 7 1.993 -8.522 5.304 1.00 45.63 O
ATOM 13 C1' C A 7 3.647 -8.744 3.512 1.00 43.49 C
ATOM 14 N1 C A 7 4.917 -9.452 3.350 1.00 43.94 N
ATOM 15 C2 C A 7 4.891 -10.857 3.350 1.00 44.61 C
ATOM 16 O2 C A 7 3.796 -11.423 3.479 1.00 44.36 O
ATOM 17 N3 C A 7 6.063 -11.549 3.207 1.00 45.16 N
ATOM 18 C4 C A 7 7.221 -10.870 3.067 1.00 45.31 C
ATOM 19 N4 C A 7 8.345 -11.594 2.934 1.00 46.44 N
ATOM 20 C5 C A 7 7.269 -9.430 3.057 1.00 44.84 C
ATOM 21 C6 C A 7 6.107 -8.762 3.205 1.00 44.71 C
ATOM 22 P G A 8 3.562 -6.970 7.750 1.00 49.50 P
ATOM 23 OP1 G A 8 3.330 -5.809 8.649 1.00 48.81 O
ATOM 24 OP2 G A 8 4.812 -7.780 7.862 1.00 49.04 O
ATOM 25 O5' G A 8 2.372 -8.042 7.842 1.00 48.47 O
TER
ATOM 1 O3' C B 7 3.331 -6.406 6.265 1.00 47.14 O
ATOM 2 P G B 8 3.562 -6.970 7.750 1.00 49.50 P
ATOM 3 OP1 G B 8 3.330 -5.809 8.649 1.00 48.81 O
ATOM 4 OP2 G B 8 4.812 -7.780 7.862 1.00 49.04 O
ATOM 5 O5' G B 8 2.372 -8.042 7.842 1.00 48.47 O
ATOM 6 C5' G B 8 2.448 -8.968 8.904 1.00 48.63 C
ATOM 7 C4' G B 8 2.862 -10.369 8.500 1.00 49.23 C
ATOM 8 O4' G B 8 3.532 -10.470 7.220 1.00 48.74 O
ATOM 9 C3' G B 8 3.888 -10.919 9.459 1.00 50.38 C
ATOM 10 O3' G B 8 3.295 -11.221 10.719 1.00 53.66 O
ATOM 11 C2' G B 8 4.370 -12.141 8.678 1.00 50.07 C
ATOM 12 O2' G B 8 3.512 -13.267 8.695 1.00 50.29 O
ATOM 13 C1' G B 8 4.427 -11.576 7.261 1.00 49.05 C
ATOM 14 N9 G B 8 5.784 -11.146 6.927 1.00 47.90 N
ATOM 15 C8 G B 8 6.185 -9.845 6.783 1.00 45.89 C
ATOM 16 N7 G B 8 7.436 -9.744 6.484 1.00 45.89 N
ATOM 17 C5 G B 8 7.913 -11.054 6.440 1.00 46.90 C
ATOM 18 C6 G B 8 9.221 -11.549 6.173 1.00 48.05 C
ATOM 19 O6 G B 8 10.257 -10.913 5.903 1.00 49.14 O
ATOM 20 N1 G B 8 9.297 -12.940 6.230 1.00 47.96 N
ATOM 21 C2 G B 8 8.242 -13.760 6.500 1.00 47.30 C
ATOM 22 N2 G B 8 8.583 -15.059 6.482 1.00 47.10 N
ATOM 23 N3 G B 8 6.996 -13.321 6.750 1.00 46.81 N
ATOM 24 C4 G B 8 6.905 -11.951 6.712 1.00 47.30 C
ATOM 25 P U B 9 3.556 -10.357 12.061 1.00 57.22 P
ATOM 26 OP1 U B 9 2.252 -9.977 12.685 1.00 55.78 O
ATOM 27 OP2 U B 9 4.513 -9.270 11.727 1.00 55.14 O
ATOM 28 O5' U B 9 4.242 -11.488 12.965 1.00 58.13 O
TER
ATOM 2 P C A 7 6.842 -4.587 3.615 1.00 44.00 P
ATOM 3 OP1 C A 7 6.591 -3.243 4.234 1.00 41.99 O
ATOM 4 OP2 C A 7 7.946 -5.465 4.098 1.00 41.99 O
ATOM 5 O5' C A 7 5.574 -5.568 3.671 1.00 42.51 O
ATOM 6 C5' C A 7 4.218 -5.169 3.470 1.00 43.13 C
ATOM 7 C4' C A 7 3.444 -6.428 3.823 1.00 44.41 C
ATOM 8 O4' C A 7 3.744 -7.487 2.878 1.00 44.31 O
ATOM 9 C3' C A 7 3.889 -7.067 5.131 1.00 45.33 C
ATOM 10 O3' C A 7 3.331 -6.406 6.265 1.00 47.14 O
ATOM 11 C2' C A 7 3.368 -8.479 4.980 1.00 44.38 C
ATOM 12 O2' C A 7 1.993 -8.522 5.304 1.00 45.63 O
ATOM 13 C1' C A 7 3.647 -8.744 3.512 1.00 43.49 C
ATOM 14 N1 C A 7 4.917 -9.452 3.350 1.00 43.94 N
ATOM 15 C2 C A 7 4.891 -10.857 3.350 1.00 44.61 C
ATOM 16 O2 C A 7 3.796 -11.423 3.479 1.00 44.36 O
ATOM 17 N3 C A 7 6.063 -11.549 3.207 1.00 45.16 N
ATOM 18 C4 C A 7 7.221 -10.870 3.067 1.00 45.31 C
ATOM 19 N4 C A 7 8.345 -11.594 2.934 1.00 46.44 N
ATOM 20 C5 C A 7 7.269 -9.430 3.057 1.00 44.84 C
ATOM 21 C6 C A 7 6.107 -8.762 3.205 1.00 44.71 C
ATOM 22 P G A 8 3.562 -6.970 7.750 1.00 49.50 P
ATOM 23 OP1 G A 8 3.330 -5.809 8.649 1.00 48.81 O
ATOM 24 OP2 G A 8 4.812 -7.780 7.862 1.00 49.04 O
ATOM 25 O5' G A 8 2.372 -8.042 7.842 1.00 48.47 O
TER
ATOM 1 O3' C B 7 3.331 -6.406 6.265 1.00 47.14 O
ATOM 2 P G B 8 3.562 -6.970 7.750 1.00 49.50 P
ATOM 3 OP1 G B 8 3.330 -5.809 8.649 1.00 48.81 O
ATOM 4 OP2 G B 8 4.812 -7.780 7.862 1.00 49.04 O
ATOM 5 O5' G B 8 2.372 -8.042 7.842 1.00 48.47 O
ATOM 6 C5' G B 8 2.448 -8.968 8.904 1.00 48.63 C
ATOM 7 C4' G B 8 2.862 -10.369 8.500 1.00 49.23 C
ATOM 8 O4' G B 8 3.532 -10.470 7.220 1.00 48.74 O
ATOM 9 C3' G B 8 3.888 -10.919 9.459 1.00 50.38 C
ATOM 10 O3' G B 8 3.295 -11.221 10.719 1.00 53.66 O
ATOM 11 C2' G B 8 4.370 -12.141 8.678 1.00 50.07 C
ATOM 12 O2' G B 8 3.512 -13.267 8.695 1.00 50.29 O
ATOM 13 C1' G B 8 4.427 -11.576 7.261 1.00 49.05 C
ATOM 14 N9 G B 8 5.784 -11.146 6.927 1.00 47.90 N
ATOM 15 C8 G B 8 6.185 -9.845 6.783 1.00 45.89 C
ATOM 16 N7 G B 8 7.436 -9.744 6.484 1.00 45.89 N
ATOM 17 C5 G B 8 7.913 -11.054 6.440 1.00 46.90 C
ATOM 18 C6 G B 8 9.221 -11.549 6.173 1.00 48.05 C
ATOM 19 O6 G B 8 10.257 -10.913 5.903 1.00 49.14 O
ATOM 20 N1 G B 8 9.297 -12.940 6.230 1.00 47.96 N
ATOM 21 C2 G B 8 8.242 -13.760 6.500 1.00 47.30 C
ATOM 22 N2 G B 8 8.583 -15.059 6.482 1.00 47.10 N
ATOM 23 N3 G B 8 6.996 -13.321 6.750 1.00 46.81 N
ATOM 24 C4 G B 8 6.905 -11.951 6.712 1.00 47.30 C
ATOM 25 P U B 9 3.556 -10.357 12.061 1.00 57.22 P
ATOM 26 OP1 U B 9 2.252 -9.977 12.685 1.00 55.78 O
ATOM 27 OP2 U B 9 4.513 -9.270 11.727 1.00 55.14 O
ATOM 28 O5' U B 9 4.242 -11.488 12.965 1.00 58.13 O
TER
Atoms:
C2: (4.891,-10.857,3.350)
OP1: (6.591,-3.243,4.234)
OP2: (7.946,-5.465,4.098)
C4: (7.221,-10.870,3.067)
O5': (5.574,-5.568,3.671)
C3': (3.889,-7.067,5.131)
C1': (3.647,-8.744,3.512)
O4': (3.744,-7.487,2.878)
C5': (4.218,-5.169,3.470)
P: (6.842,-4.587,3.615)
O2: (3.796,-11.423,3.479)
C4': (3.444,-6.428,3.823)
C2': (3.368,-8.479,4.980)
O2': (1.993,-8.522,5.304)
N1: (4.917,-9.452,3.350)
N3: (6.063,-11.549,3.207)
N4: (8.345,-11.594,2.934)
C6: (6.107,-8.762,3.205)
C5: (7.269,-9.430,3.057)
O3': (3.331,-6.406,6.265)
OP1: (6.591,-3.243,4.234)
OP2: (7.946,-5.465,4.098)
C4: (7.221,-10.870,3.067)
O5': (5.574,-5.568,3.671)
C3': (3.889,-7.067,5.131)
C1': (3.647,-8.744,3.512)
O4': (3.744,-7.487,2.878)
C5': (4.218,-5.169,3.470)
P: (6.842,-4.587,3.615)
O2: (3.796,-11.423,3.479)
C4': (3.444,-6.428,3.823)
C2': (3.368,-8.479,4.980)
O2': (1.993,-8.522,5.304)
N1: (4.917,-9.452,3.350)
N3: (6.063,-11.549,3.207)
N4: (8.345,-11.594,2.934)
C6: (6.107,-8.762,3.205)
C5: (7.269,-9.430,3.057)
O3': (3.331,-6.406,6.265)
OP1: (3.330,-5.809,8.649)
OP2: (4.812,-7.780,7.862)
C3': (3.888,-10.919,9.459)
C1': (4.427,-11.576,7.261)
C5': (2.448,-8.968,8.904)
O6: (10.257,-10.913,5.903)
O4': (3.532,-10.470,7.220)
C8: (6.185,-9.845,6.783)
C2: (8.242,-13.760,6.500)
C6: (9.221,-11.549,6.173)
C5: (7.913,-11.054,6.440)
C4: (6.905,-11.951,6.712)
P: (3.562,-6.970,7.750)
C4': (2.862,-10.369,8.500)
C2': (4.370,-12.141,8.678)
O2': (3.512,-13.267,8.695)
N1: (9.297,-12.940,6.230)
N2: (8.583,-15.059,6.482)
N3: (6.996,-13.321,6.750)
N7: (7.436,-9.744,6.484)
N9: (5.784,-11.146,6.927)
O5': (2.372,-8.042,7.842)
O3': (3.295,-11.221,10.719)
OP2: (4.812,-7.780,7.862)
C3': (3.888,-10.919,9.459)
C1': (4.427,-11.576,7.261)
C5': (2.448,-8.968,8.904)
O6: (10.257,-10.913,5.903)
O4': (3.532,-10.470,7.220)
C8: (6.185,-9.845,6.783)
C2: (8.242,-13.760,6.500)
C6: (9.221,-11.549,6.173)
C5: (7.913,-11.054,6.440)
C4: (6.905,-11.951,6.712)
P: (3.562,-6.970,7.750)
C4': (2.862,-10.369,8.500)
C2': (4.370,-12.141,8.678)
O2': (3.512,-13.267,8.695)
N1: (9.297,-12.940,6.230)
N2: (8.583,-15.059,6.482)
N3: (6.996,-13.321,6.750)
N7: (7.436,-9.744,6.484)
N9: (5.784,-11.146,6.927)
O5': (2.372,-8.042,7.842)
O3': (3.295,-11.221,10.719)
Image (generated by PyMOL):