Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A259:A366
Extra
PDB:
ATOM 1 O3' U A 258 78.259 102.839 6.602 1.00 70.28 O
ATOM 2 P C A 259 76.928 102.259 7.299 1.00 74.47 P
ATOM 3 OP1 C A 259 75.894 103.322 7.172 1.00 73.30 O
ATOM 4 OP2 C A 259 77.278 101.724 8.646 1.00 74.15 O
ATOM 5 O5' C A 259 76.492 101.026 6.386 1.00 76.63 O
ATOM 6 C5' C A 259 77.352 99.879 6.231 1.00 80.92 C
ATOM 7 C4' C A 259 76.563 98.590 6.371 1.00 83.71 C
ATOM 8 O4' C A 259 77.436 97.479 6.033 1.00 84.68 O
ATOM 9 C3' C A 259 76.023 98.274 7.761 1.00 85.66 C
ATOM 10 O3' C A 259 74.878 97.427 7.624 1.00 88.64 O
ATOM 11 C2' C A 259 77.176 97.474 8.371 1.00 85.24 C
ATOM 12 O2' C A 259 76.778 96.624 9.429 1.00 84.96 O
ATOM 13 C1' C A 259 77.645 96.658 7.165 1.00 84.60 C
ATOM 14 N1 C A 259 79.071 96.274 7.166 1.00 85.20 N
ATOM 15 C2 C A 259 79.437 94.966 6.764 1.00 85.91 C
ATOM 16 O2 C A 259 78.553 94.146 6.463 1.00 86.22 O
ATOM 17 N3 C A 259 80.749 94.636 6.713 1.00 86.54 N
ATOM 18 C4 C A 259 81.681 95.538 7.042 1.00 86.83 C
ATOM 19 N4 C A 259 82.965 95.171 6.951 1.00 86.71 N
ATOM 20 C5 C A 259 81.338 96.857 7.474 1.00 86.32 C
ATOM 21 C6 C A 259 80.037 97.176 7.525 1.00 85.23 C
ATOM 22 P A A 260 73.414 98.057 7.348 1.00 90.60 P
ATOM 23 OP1 A A 260 73.519 99.351 6.621 1.00 89.78 O
ATOM 24 OP2 A A 260 72.638 97.987 8.614 1.00 90.67 O
ATOM 25 O5' A A 260 72.768 97.004 6.344 1.00 91.35 O
TER
ATOM 1 O3' C B 365 92.631 102.299 6.138 1.00 68.83 O
ATOM 2 P A B 366 92.799 101.733 7.647 1.00 68.94 P
ATOM 3 OP1 A B 366 93.572 102.811 8.310 1.00 69.47 O
ATOM 4 OP2 A B 366 93.316 100.332 7.687 1.00 67.45 O
ATOM 5 O5' A B 366 91.323 101.703 8.252 1.00 68.49 O
ATOM 6 C5' A B 366 90.494 102.893 8.271 1.00 69.15 C
ATOM 7 C4' A B 366 89.077 102.550 8.703 1.00 68.81 C
ATOM 8 O4' A B 366 88.387 101.851 7.634 1.00 68.97 O
ATOM 9 C3' A B 366 88.915 101.649 9.927 1.00 69.13 C
ATOM 10 O3' A B 366 89.016 102.374 11.159 1.00 67.76 O
ATOM 11 C2' A B 366 87.519 101.081 9.720 1.00 69.49 C
ATOM 12 O2' A B 366 86.540 102.007 10.161 1.00 69.91 O
ATOM 13 C1' A B 366 87.478 100.917 8.191 1.00 69.99 C
ATOM 14 N9 A B 366 87.811 99.575 7.685 1.00 70.56 N
ATOM 15 C8 A B 366 89.048 99.020 7.421 1.00 69.87 C
ATOM 16 N7 A B 366 88.993 97.772 7.013 1.00 69.87 N
ATOM 17 C5 A B 366 87.631 97.481 7.006 1.00 71.16 C
ATOM 18 C6 A B 366 86.896 96.306 6.699 1.00 72.17 C
ATOM 19 N6 A B 366 87.453 95.135 6.366 1.00 73.85 N
ATOM 20 N1 A B 366 85.544 96.377 6.768 1.00 72.38 N
ATOM 21 C2 A B 366 84.977 97.533 7.139 1.00 72.02 C
ATOM 22 N3 A B 366 85.551 98.684 7.474 1.00 71.42 N
ATOM 23 C4 A B 366 86.893 98.592 7.391 1.00 70.86 C
ATOM 24 P G B 367 89.392 101.594 12.519 1.00 67.12 P
ATOM 25 OP1 G B 367 90.629 100.795 12.278 1.00 66.63 O
ATOM 26 OP2 G B 367 88.153 100.906 12.996 1.00 68.24 O
ATOM 27 O5' G B 367 89.750 102.757 13.548 1.00 65.55 O
TER
ATOM 2 P C A 259 76.928 102.259 7.299 1.00 74.47 P
ATOM 3 OP1 C A 259 75.894 103.322 7.172 1.00 73.30 O
ATOM 4 OP2 C A 259 77.278 101.724 8.646 1.00 74.15 O
ATOM 5 O5' C A 259 76.492 101.026 6.386 1.00 76.63 O
ATOM 6 C5' C A 259 77.352 99.879 6.231 1.00 80.92 C
ATOM 7 C4' C A 259 76.563 98.590 6.371 1.00 83.71 C
ATOM 8 O4' C A 259 77.436 97.479 6.033 1.00 84.68 O
ATOM 9 C3' C A 259 76.023 98.274 7.761 1.00 85.66 C
ATOM 10 O3' C A 259 74.878 97.427 7.624 1.00 88.64 O
ATOM 11 C2' C A 259 77.176 97.474 8.371 1.00 85.24 C
ATOM 12 O2' C A 259 76.778 96.624 9.429 1.00 84.96 O
ATOM 13 C1' C A 259 77.645 96.658 7.165 1.00 84.60 C
ATOM 14 N1 C A 259 79.071 96.274 7.166 1.00 85.20 N
ATOM 15 C2 C A 259 79.437 94.966 6.764 1.00 85.91 C
ATOM 16 O2 C A 259 78.553 94.146 6.463 1.00 86.22 O
ATOM 17 N3 C A 259 80.749 94.636 6.713 1.00 86.54 N
ATOM 18 C4 C A 259 81.681 95.538 7.042 1.00 86.83 C
ATOM 19 N4 C A 259 82.965 95.171 6.951 1.00 86.71 N
ATOM 20 C5 C A 259 81.338 96.857 7.474 1.00 86.32 C
ATOM 21 C6 C A 259 80.037 97.176 7.525 1.00 85.23 C
ATOM 22 P A A 260 73.414 98.057 7.348 1.00 90.60 P
ATOM 23 OP1 A A 260 73.519 99.351 6.621 1.00 89.78 O
ATOM 24 OP2 A A 260 72.638 97.987 8.614 1.00 90.67 O
ATOM 25 O5' A A 260 72.768 97.004 6.344 1.00 91.35 O
TER
ATOM 1 O3' C B 365 92.631 102.299 6.138 1.00 68.83 O
ATOM 2 P A B 366 92.799 101.733 7.647 1.00 68.94 P
ATOM 3 OP1 A B 366 93.572 102.811 8.310 1.00 69.47 O
ATOM 4 OP2 A B 366 93.316 100.332 7.687 1.00 67.45 O
ATOM 5 O5' A B 366 91.323 101.703 8.252 1.00 68.49 O
ATOM 6 C5' A B 366 90.494 102.893 8.271 1.00 69.15 C
ATOM 7 C4' A B 366 89.077 102.550 8.703 1.00 68.81 C
ATOM 8 O4' A B 366 88.387 101.851 7.634 1.00 68.97 O
ATOM 9 C3' A B 366 88.915 101.649 9.927 1.00 69.13 C
ATOM 10 O3' A B 366 89.016 102.374 11.159 1.00 67.76 O
ATOM 11 C2' A B 366 87.519 101.081 9.720 1.00 69.49 C
ATOM 12 O2' A B 366 86.540 102.007 10.161 1.00 69.91 O
ATOM 13 C1' A B 366 87.478 100.917 8.191 1.00 69.99 C
ATOM 14 N9 A B 366 87.811 99.575 7.685 1.00 70.56 N
ATOM 15 C8 A B 366 89.048 99.020 7.421 1.00 69.87 C
ATOM 16 N7 A B 366 88.993 97.772 7.013 1.00 69.87 N
ATOM 17 C5 A B 366 87.631 97.481 7.006 1.00 71.16 C
ATOM 18 C6 A B 366 86.896 96.306 6.699 1.00 72.17 C
ATOM 19 N6 A B 366 87.453 95.135 6.366 1.00 73.85 N
ATOM 20 N1 A B 366 85.544 96.377 6.768 1.00 72.38 N
ATOM 21 C2 A B 366 84.977 97.533 7.139 1.00 72.02 C
ATOM 22 N3 A B 366 85.551 98.684 7.474 1.00 71.42 N
ATOM 23 C4 A B 366 86.893 98.592 7.391 1.00 70.86 C
ATOM 24 P G B 367 89.392 101.594 12.519 1.00 67.12 P
ATOM 25 OP1 G B 367 90.629 100.795 12.278 1.00 66.63 O
ATOM 26 OP2 G B 367 88.153 100.906 12.996 1.00 68.24 O
ATOM 27 O5' G B 367 89.750 102.757 13.548 1.00 65.55 O
TER
Atoms:
C2: (79.437,94.966,6.764)
OP1: (75.894,103.322,7.172)
OP2: (77.278,101.724,8.646)
C4: (81.681,95.538,7.042)
O5': (76.492,101.026,6.386)
C3': (76.023,98.274,7.761)
C1': (77.645,96.658,7.165)
O4': (77.436,97.479,6.033)
C5': (77.352,99.879,6.231)
P: (76.928,102.259,7.299)
O2: (78.553,94.146,6.463)
C4': (76.563,98.590,6.371)
C2': (77.176,97.474,8.371)
O2': (76.778,96.624,9.429)
N1: (79.071,96.274,7.166)
N3: (80.749,94.636,6.713)
N4: (82.965,95.171,6.951)
C6: (80.037,97.176,7.525)
C5: (81.338,96.857,7.474)
O3': (74.878,97.427,7.624)
OP1: (75.894,103.322,7.172)
OP2: (77.278,101.724,8.646)
C4: (81.681,95.538,7.042)
O5': (76.492,101.026,6.386)
C3': (76.023,98.274,7.761)
C1': (77.645,96.658,7.165)
O4': (77.436,97.479,6.033)
C5': (77.352,99.879,6.231)
P: (76.928,102.259,7.299)
O2: (78.553,94.146,6.463)
C4': (76.563,98.590,6.371)
C2': (77.176,97.474,8.371)
O2': (76.778,96.624,9.429)
N1: (79.071,96.274,7.166)
N3: (80.749,94.636,6.713)
N4: (82.965,95.171,6.951)
C6: (80.037,97.176,7.525)
C5: (81.338,96.857,7.474)
O3': (74.878,97.427,7.624)
OP1: (93.572,102.811,8.310)
OP2: (93.316,100.332,7.687)
C3': (88.915,101.649,9.927)
C1': (87.478,100.917,8.191)
C5': (90.494,102.893,8.271)
O4': (88.387,101.851,7.634)
C8: (89.048,99.020,7.421)
O2': (86.540,102.007,10.161)
C6: (86.896,96.306,6.699)
C5: (87.631,97.481,7.006)
C4: (86.893,98.592,7.391)
P: (92.799,101.733,7.647)
C4': (89.077,102.550,8.703)
C2': (87.519,101.081,9.720)
C2: (84.977,97.533,7.139)
N1: (85.544,96.377,6.768)
N3: (85.551,98.684,7.474)
N6: (87.453,95.135,6.366)
N7: (88.993,97.772,7.013)
N9: (87.811,99.575,7.685)
O5': (91.323,101.703,8.252)
O3': (89.016,102.374,11.159)
OP2: (93.316,100.332,7.687)
C3': (88.915,101.649,9.927)
C1': (87.478,100.917,8.191)
C5': (90.494,102.893,8.271)
O4': (88.387,101.851,7.634)
C8: (89.048,99.020,7.421)
O2': (86.540,102.007,10.161)
C6: (86.896,96.306,6.699)
C5: (87.631,97.481,7.006)
C4: (86.893,98.592,7.391)
P: (92.799,101.733,7.647)
C4': (89.077,102.550,8.703)
C2': (87.519,101.081,9.720)
C2: (84.977,97.533,7.139)
N1: (85.544,96.377,6.768)
N3: (85.551,98.684,7.474)
N6: (87.453,95.135,6.366)
N7: (88.993,97.772,7.013)
N9: (87.811,99.575,7.685)
O5': (91.323,101.703,8.252)
O3': (89.016,102.374,11.159)
Image (generated by PyMOL):