Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0259:0366
Extra
PDB:
ATOM 1 O3' U A 258 77.960 102.958 6.240 1.00 61.79 O
ATOM 2 P C A 259 76.607 102.408 6.905 1.00 63.83 P
ATOM 3 OP1 C A 259 75.518 103.399 6.717 1.00 62.79 O
ATOM 4 OP2 C A 259 76.978 101.969 8.274 1.00 64.77 O
ATOM 5 O5' C A 259 76.238 101.125 6.042 1.00 66.42 O
ATOM 6 C5' C A 259 77.177 100.051 5.878 1.00 70.99 C
ATOM 7 C4' C A 259 76.468 98.720 5.965 1.00 74.20 C
ATOM 8 O4' C A 259 77.405 97.667 5.624 1.00 74.21 O
ATOM 9 C3' C A 259 75.914 98.360 7.339 1.00 76.38 C
ATOM 10 O3' C A 259 74.790 97.503 7.178 1.00 79.33 O
ATOM 11 C2' C A 259 77.061 97.565 7.950 1.00 76.38 C
ATOM 12 O2' C A 259 76.623 96.675 8.959 1.00 77.71 O
ATOM 13 C1' C A 259 77.577 96.806 6.726 1.00 74.42 C
ATOM 14 N1 C A 259 78.997 96.421 6.762 1.00 74.05 N
ATOM 15 C2 C A 259 79.344 95.100 6.432 1.00 74.68 C
ATOM 16 O2 C A 259 78.441 94.292 6.148 1.00 74.74 O
ATOM 17 N3 C A 259 80.650 94.742 6.426 1.00 74.39 N
ATOM 18 C4 C A 259 81.591 95.642 6.729 1.00 74.47 C
ATOM 19 N4 C A 259 82.864 95.249 6.687 1.00 74.58 N
ATOM 20 C5 C A 259 81.265 96.987 7.084 1.00 73.80 C
ATOM 21 C6 C A 259 79.969 97.329 7.090 1.00 73.42 C
ATOM 22 P A A 260 73.309 98.121 7.079 1.00 82.79 P
ATOM 23 OP1 A A 260 73.379 99.520 6.581 1.00 82.92 O
ATOM 24 OP2 A A 260 72.616 97.836 8.364 1.00 84.19 O
ATOM 25 O5' A A 260 72.638 97.226 5.948 1.00 83.81 O
TER
ATOM 1 O3' C B 365 92.498 102.340 5.818 1.00 56.06 O
ATOM 2 P A B 366 92.624 101.797 7.327 1.00 57.89 P
ATOM 3 OP1 A B 366 93.355 102.840 8.090 1.00 57.03 O
ATOM 4 OP2 A B 366 93.147 100.404 7.302 1.00 56.60 O
ATOM 5 O5' A B 366 91.117 101.749 7.847 1.00 55.32 O
ATOM 6 C5' A B 366 90.329 102.951 7.957 1.00 53.62 C
ATOM 7 C4' A B 366 88.901 102.614 8.319 1.00 53.39 C
ATOM 8 O4' A B 366 88.281 101.873 7.238 1.00 54.95 O
ATOM 9 C3' A B 366 88.714 101.721 9.534 1.00 52.69 C
ATOM 10 O3' A B 366 88.779 102.476 10.737 1.00 51.18 O
ATOM 11 C2' A B 366 87.332 101.125 9.295 1.00 53.75 C
ATOM 12 O2' A B 366 86.269 101.976 9.675 1.00 55.25 O
ATOM 13 C1' A B 366 87.331 100.964 7.772 1.00 55.25 C
ATOM 14 N9 A B 366 87.666 99.609 7.328 1.00 56.08 N
ATOM 15 C8 A B 366 88.903 99.036 7.129 1.00 55.77 C
ATOM 16 N7 A B 366 88.849 97.781 6.753 1.00 55.08 N
ATOM 17 C5 A B 366 87.488 97.509 6.696 1.00 55.70 C
ATOM 18 C6 A B 366 86.765 96.345 6.373 1.00 55.85 C
ATOM 19 N6 A B 366 87.334 95.183 6.047 1.00 55.80 N
ATOM 20 N1 A B 366 85.416 96.415 6.405 1.00 56.84 N
ATOM 21 C2 A B 366 84.841 97.574 6.752 1.00 56.54 C
ATOM 22 N3 A B 366 85.409 98.728 7.085 1.00 56.17 N
ATOM 23 C4 A B 366 86.749 98.628 7.037 1.00 55.93 C
ATOM 24 P G B 367 89.228 101.763 12.105 1.00 50.92 P
ATOM 25 OP1 G B 367 90.517 101.059 11.870 1.00 47.23 O
ATOM 26 OP2 G B 367 88.051 101.007 12.622 1.00 50.65 O
ATOM 27 O5' G B 367 89.503 102.978 13.093 1.00 48.35 O
TER
ATOM 2 P C A 259 76.607 102.408 6.905 1.00 63.83 P
ATOM 3 OP1 C A 259 75.518 103.399 6.717 1.00 62.79 O
ATOM 4 OP2 C A 259 76.978 101.969 8.274 1.00 64.77 O
ATOM 5 O5' C A 259 76.238 101.125 6.042 1.00 66.42 O
ATOM 6 C5' C A 259 77.177 100.051 5.878 1.00 70.99 C
ATOM 7 C4' C A 259 76.468 98.720 5.965 1.00 74.20 C
ATOM 8 O4' C A 259 77.405 97.667 5.624 1.00 74.21 O
ATOM 9 C3' C A 259 75.914 98.360 7.339 1.00 76.38 C
ATOM 10 O3' C A 259 74.790 97.503 7.178 1.00 79.33 O
ATOM 11 C2' C A 259 77.061 97.565 7.950 1.00 76.38 C
ATOM 12 O2' C A 259 76.623 96.675 8.959 1.00 77.71 O
ATOM 13 C1' C A 259 77.577 96.806 6.726 1.00 74.42 C
ATOM 14 N1 C A 259 78.997 96.421 6.762 1.00 74.05 N
ATOM 15 C2 C A 259 79.344 95.100 6.432 1.00 74.68 C
ATOM 16 O2 C A 259 78.441 94.292 6.148 1.00 74.74 O
ATOM 17 N3 C A 259 80.650 94.742 6.426 1.00 74.39 N
ATOM 18 C4 C A 259 81.591 95.642 6.729 1.00 74.47 C
ATOM 19 N4 C A 259 82.864 95.249 6.687 1.00 74.58 N
ATOM 20 C5 C A 259 81.265 96.987 7.084 1.00 73.80 C
ATOM 21 C6 C A 259 79.969 97.329 7.090 1.00 73.42 C
ATOM 22 P A A 260 73.309 98.121 7.079 1.00 82.79 P
ATOM 23 OP1 A A 260 73.379 99.520 6.581 1.00 82.92 O
ATOM 24 OP2 A A 260 72.616 97.836 8.364 1.00 84.19 O
ATOM 25 O5' A A 260 72.638 97.226 5.948 1.00 83.81 O
TER
ATOM 1 O3' C B 365 92.498 102.340 5.818 1.00 56.06 O
ATOM 2 P A B 366 92.624 101.797 7.327 1.00 57.89 P
ATOM 3 OP1 A B 366 93.355 102.840 8.090 1.00 57.03 O
ATOM 4 OP2 A B 366 93.147 100.404 7.302 1.00 56.60 O
ATOM 5 O5' A B 366 91.117 101.749 7.847 1.00 55.32 O
ATOM 6 C5' A B 366 90.329 102.951 7.957 1.00 53.62 C
ATOM 7 C4' A B 366 88.901 102.614 8.319 1.00 53.39 C
ATOM 8 O4' A B 366 88.281 101.873 7.238 1.00 54.95 O
ATOM 9 C3' A B 366 88.714 101.721 9.534 1.00 52.69 C
ATOM 10 O3' A B 366 88.779 102.476 10.737 1.00 51.18 O
ATOM 11 C2' A B 366 87.332 101.125 9.295 1.00 53.75 C
ATOM 12 O2' A B 366 86.269 101.976 9.675 1.00 55.25 O
ATOM 13 C1' A B 366 87.331 100.964 7.772 1.00 55.25 C
ATOM 14 N9 A B 366 87.666 99.609 7.328 1.00 56.08 N
ATOM 15 C8 A B 366 88.903 99.036 7.129 1.00 55.77 C
ATOM 16 N7 A B 366 88.849 97.781 6.753 1.00 55.08 N
ATOM 17 C5 A B 366 87.488 97.509 6.696 1.00 55.70 C
ATOM 18 C6 A B 366 86.765 96.345 6.373 1.00 55.85 C
ATOM 19 N6 A B 366 87.334 95.183 6.047 1.00 55.80 N
ATOM 20 N1 A B 366 85.416 96.415 6.405 1.00 56.84 N
ATOM 21 C2 A B 366 84.841 97.574 6.752 1.00 56.54 C
ATOM 22 N3 A B 366 85.409 98.728 7.085 1.00 56.17 N
ATOM 23 C4 A B 366 86.749 98.628 7.037 1.00 55.93 C
ATOM 24 P G B 367 89.228 101.763 12.105 1.00 50.92 P
ATOM 25 OP1 G B 367 90.517 101.059 11.870 1.00 47.23 O
ATOM 26 OP2 G B 367 88.051 101.007 12.622 1.00 50.65 O
ATOM 27 O5' G B 367 89.503 102.978 13.093 1.00 48.35 O
TER
Atoms:
C2: (79.344,95.100,6.432)
OP1: (75.518,103.399,6.717)
OP2: (76.978,101.969,8.274)
C4: (81.591,95.642,6.729)
O5': (76.238,101.125,6.042)
C3': (75.914,98.360,7.339)
C1': (77.577,96.806,6.726)
O4': (77.405,97.667,5.624)
C5': (77.177,100.051,5.878)
P: (76.607,102.408,6.905)
O2: (78.441,94.292,6.148)
C4': (76.468,98.720,5.965)
C2': (77.061,97.565,7.950)
O2': (76.623,96.675,8.959)
N1: (78.997,96.421,6.762)
N3: (80.650,94.742,6.426)
N4: (82.864,95.249,6.687)
C6: (79.969,97.329,7.090)
C5: (81.265,96.987,7.084)
O3': (74.790,97.503,7.178)
OP1: (75.518,103.399,6.717)
OP2: (76.978,101.969,8.274)
C4: (81.591,95.642,6.729)
O5': (76.238,101.125,6.042)
C3': (75.914,98.360,7.339)
C1': (77.577,96.806,6.726)
O4': (77.405,97.667,5.624)
C5': (77.177,100.051,5.878)
P: (76.607,102.408,6.905)
O2: (78.441,94.292,6.148)
C4': (76.468,98.720,5.965)
C2': (77.061,97.565,7.950)
O2': (76.623,96.675,8.959)
N1: (78.997,96.421,6.762)
N3: (80.650,94.742,6.426)
N4: (82.864,95.249,6.687)
C6: (79.969,97.329,7.090)
C5: (81.265,96.987,7.084)
O3': (74.790,97.503,7.178)
OP1: (93.355,102.840,8.090)
OP2: (93.147,100.404,7.302)
C3': (88.714,101.721,9.534)
C1': (87.331,100.964,7.772)
C5': (90.329,102.951,7.957)
O4': (88.281,101.873,7.238)
C8: (88.903,99.036,7.129)
O2': (86.269,101.976,9.675)
C6: (86.765,96.345,6.373)
C5: (87.488,97.509,6.696)
C4: (86.749,98.628,7.037)
P: (92.624,101.797,7.327)
C4': (88.901,102.614,8.319)
C2': (87.332,101.125,9.295)
C2: (84.841,97.574,6.752)
N1: (85.416,96.415,6.405)
N3: (85.409,98.728,7.085)
N6: (87.334,95.183,6.047)
N7: (88.849,97.781,6.753)
N9: (87.666,99.609,7.328)
O5': (91.117,101.749,7.847)
O3': (88.779,102.476,10.737)
OP2: (93.147,100.404,7.302)
C3': (88.714,101.721,9.534)
C1': (87.331,100.964,7.772)
C5': (90.329,102.951,7.957)
O4': (88.281,101.873,7.238)
C8: (88.903,99.036,7.129)
O2': (86.269,101.976,9.675)
C6: (86.765,96.345,6.373)
C5: (87.488,97.509,6.696)
C4: (86.749,98.628,7.037)
P: (92.624,101.797,7.327)
C4': (88.901,102.614,8.319)
C2': (87.332,101.125,9.295)
C2: (84.841,97.574,6.752)
N1: (85.416,96.415,6.405)
N3: (85.409,98.728,7.085)
N6: (87.334,95.183,6.047)
N7: (88.849,97.781,6.753)
N9: (87.666,99.609,7.328)
O5': (91.117,101.749,7.847)
O3': (88.779,102.476,10.737)
Image (generated by PyMOL):