Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12041:12042
Extra
PDB:
ATOM 1 O3' A A2040 2.354 -33.844 108.394 1.00 50.75 O
ATOM 2 P G A2041 1.347 -33.773 107.150 1.00 61.10 P
ATOM 3 OP1 G A2041 0.690 -32.457 107.217 1.00 61.05 O
ATOM 4 OP2 G A2041 0.513 -34.995 107.209 1.00 61.40 O
ATOM 5 O5' G A2041 2.301 -33.848 105.875 1.00 60.69 O
ATOM 6 C5' G A2041 3.107 -32.755 105.475 1.00 60.35 C
ATOM 7 C4' G A2041 4.039 -33.164 104.357 1.00 60.03 C
ATOM 8 O4' G A2041 4.725 -34.397 104.717 1.00 60.18 O
ATOM 9 C3' G A2041 3.378 -33.512 103.038 1.00 59.90 C
ATOM 10 O3' G A2041 2.996 -32.387 102.268 1.00 59.66 O
ATOM 11 C2' G A2041 4.414 -34.406 102.371 1.00 59.74 C
ATOM 12 O2' G A2041 5.507 -33.638 101.867 1.00 59.39 O
ATOM 13 C1' G A2041 4.906 -35.204 103.569 1.00 60.02 C
ATOM 14 N9 G A2041 4.157 -36.459 103.765 1.00 60.34 N
ATOM 15 C8 G A2041 3.357 -36.735 104.841 1.00 60.72 C
ATOM 16 N7 G A2041 2.819 -37.925 104.820 1.00 60.97 N
ATOM 17 C5 G A2041 3.316 -38.475 103.663 1.00 60.75 C
ATOM 18 C6 G A2041 3.079 -39.749 103.124 1.00 60.88 C
ATOM 19 O6 G A2041 2.380 -40.668 103.576 1.00 61.23 O
ATOM 20 N1 G A2041 3.746 -39.917 101.942 1.00 60.59 N
ATOM 21 C2 G A2041 4.538 -38.971 101.365 1.00 60.21 C
ATOM 22 N2 G A2041 5.098 -39.333 100.212 1.00 59.98 N
ATOM 23 N3 G A2041 4.772 -37.772 101.853 1.00 60.08 N
ATOM 24 C4 G A2041 4.131 -37.593 103.004 1.00 60.37 C
ATOM 25 P C A2042 1.580 -32.429 101.501 1.00 61.63 P
ATOM 26 OP1 C A2042 1.341 -31.089 100.856 1.00 61.38 O
ATOM 27 OP2 C A2042 0.582 -32.931 102.491 1.00 62.03 O
ATOM 28 O5' C A2042 1.856 -33.528 100.386 1.00 61.51 O
TER
ATOM 1 O3' G B2041 2.996 -32.387 102.268 1.00 59.66 O
ATOM 2 P C B2042 1.580 -32.429 101.501 1.00 61.63 P
ATOM 3 OP1 C B2042 1.341 -31.089 100.856 1.00 61.38 O
ATOM 4 OP2 C B2042 0.582 -32.931 102.491 1.00 62.03 O
ATOM 5 O5' C B2042 1.856 -33.528 100.386 1.00 61.51 O
ATOM 6 C5' C B2042 2.899 -33.352 99.445 1.00 61.17 C
ATOM 7 C4' C B2042 3.050 -34.560 98.568 1.00 61.15 C
ATOM 8 O4' C B2042 3.418 -35.702 99.381 1.00 61.40 O
ATOM 9 C3' C B2042 1.786 -35.012 97.853 1.00 61.28 C
ATOM 10 O3' C B2042 1.503 -34.264 96.681 1.00 61.04 O
ATOM 11 C2' C B2042 2.054 -36.490 97.604 1.00 61.42 C
ATOM 12 O2' C B2042 2.950 -36.660 96.509 1.00 61.13 O
ATOM 13 C1' C B2042 2.781 -36.869 98.893 1.00 61.58 C
ATOM 14 N1 C B2042 1.853 -37.348 99.937 1.00 61.97 N
ATOM 15 C2 C B2042 1.347 -38.643 99.895 1.00 62.25 C
ATOM 16 O2 C B2042 1.667 -39.370 98.933 1.00 62.15 O
ATOM 17 N3 C B2042 0.514 -39.031 100.900 1.00 62.62 N
ATOM 18 C4 C B2042 0.222 -38.192 101.903 1.00 62.72 C
ATOM 19 N4 C B2042 -0.581 -38.591 102.877 1.00 63.09 N
ATOM 20 C5 C B2042 0.735 -36.884 101.976 1.00 62.45 C
ATOM 21 C6 C B2042 1.538 -36.518 100.982 1.00 62.09 C
ATOM 22 P G B2043 -0.027 -33.908 96.304 1.00 73.47 P
ATOM 23 OP1 G B2043 -0.001 -33.202 94.992 1.00 73.18 O
ATOM 24 OP2 G B2043 -0.645 -33.217 97.480 1.00 73.67 O
ATOM 25 O5' G B2043 -0.681 -35.359 96.125 1.00 73.75 O
TER
ATOM 2 P G A2041 1.347 -33.773 107.150 1.00 61.10 P
ATOM 3 OP1 G A2041 0.690 -32.457 107.217 1.00 61.05 O
ATOM 4 OP2 G A2041 0.513 -34.995 107.209 1.00 61.40 O
ATOM 5 O5' G A2041 2.301 -33.848 105.875 1.00 60.69 O
ATOM 6 C5' G A2041 3.107 -32.755 105.475 1.00 60.35 C
ATOM 7 C4' G A2041 4.039 -33.164 104.357 1.00 60.03 C
ATOM 8 O4' G A2041 4.725 -34.397 104.717 1.00 60.18 O
ATOM 9 C3' G A2041 3.378 -33.512 103.038 1.00 59.90 C
ATOM 10 O3' G A2041 2.996 -32.387 102.268 1.00 59.66 O
ATOM 11 C2' G A2041 4.414 -34.406 102.371 1.00 59.74 C
ATOM 12 O2' G A2041 5.507 -33.638 101.867 1.00 59.39 O
ATOM 13 C1' G A2041 4.906 -35.204 103.569 1.00 60.02 C
ATOM 14 N9 G A2041 4.157 -36.459 103.765 1.00 60.34 N
ATOM 15 C8 G A2041 3.357 -36.735 104.841 1.00 60.72 C
ATOM 16 N7 G A2041 2.819 -37.925 104.820 1.00 60.97 N
ATOM 17 C5 G A2041 3.316 -38.475 103.663 1.00 60.75 C
ATOM 18 C6 G A2041 3.079 -39.749 103.124 1.00 60.88 C
ATOM 19 O6 G A2041 2.380 -40.668 103.576 1.00 61.23 O
ATOM 20 N1 G A2041 3.746 -39.917 101.942 1.00 60.59 N
ATOM 21 C2 G A2041 4.538 -38.971 101.365 1.00 60.21 C
ATOM 22 N2 G A2041 5.098 -39.333 100.212 1.00 59.98 N
ATOM 23 N3 G A2041 4.772 -37.772 101.853 1.00 60.08 N
ATOM 24 C4 G A2041 4.131 -37.593 103.004 1.00 60.37 C
ATOM 25 P C A2042 1.580 -32.429 101.501 1.00 61.63 P
ATOM 26 OP1 C A2042 1.341 -31.089 100.856 1.00 61.38 O
ATOM 27 OP2 C A2042 0.582 -32.931 102.491 1.00 62.03 O
ATOM 28 O5' C A2042 1.856 -33.528 100.386 1.00 61.51 O
TER
ATOM 1 O3' G B2041 2.996 -32.387 102.268 1.00 59.66 O
ATOM 2 P C B2042 1.580 -32.429 101.501 1.00 61.63 P
ATOM 3 OP1 C B2042 1.341 -31.089 100.856 1.00 61.38 O
ATOM 4 OP2 C B2042 0.582 -32.931 102.491 1.00 62.03 O
ATOM 5 O5' C B2042 1.856 -33.528 100.386 1.00 61.51 O
ATOM 6 C5' C B2042 2.899 -33.352 99.445 1.00 61.17 C
ATOM 7 C4' C B2042 3.050 -34.560 98.568 1.00 61.15 C
ATOM 8 O4' C B2042 3.418 -35.702 99.381 1.00 61.40 O
ATOM 9 C3' C B2042 1.786 -35.012 97.853 1.00 61.28 C
ATOM 10 O3' C B2042 1.503 -34.264 96.681 1.00 61.04 O
ATOM 11 C2' C B2042 2.054 -36.490 97.604 1.00 61.42 C
ATOM 12 O2' C B2042 2.950 -36.660 96.509 1.00 61.13 O
ATOM 13 C1' C B2042 2.781 -36.869 98.893 1.00 61.58 C
ATOM 14 N1 C B2042 1.853 -37.348 99.937 1.00 61.97 N
ATOM 15 C2 C B2042 1.347 -38.643 99.895 1.00 62.25 C
ATOM 16 O2 C B2042 1.667 -39.370 98.933 1.00 62.15 O
ATOM 17 N3 C B2042 0.514 -39.031 100.900 1.00 62.62 N
ATOM 18 C4 C B2042 0.222 -38.192 101.903 1.00 62.72 C
ATOM 19 N4 C B2042 -0.581 -38.591 102.877 1.00 63.09 N
ATOM 20 C5 C B2042 0.735 -36.884 101.976 1.00 62.45 C
ATOM 21 C6 C B2042 1.538 -36.518 100.982 1.00 62.09 C
ATOM 22 P G B2043 -0.027 -33.908 96.304 1.00 73.47 P
ATOM 23 OP1 G B2043 -0.001 -33.202 94.992 1.00 73.18 O
ATOM 24 OP2 G B2043 -0.645 -33.217 97.480 1.00 73.67 O
ATOM 25 O5' G B2043 -0.681 -35.359 96.125 1.00 73.75 O
TER
Atoms:
OP1: (0.690,-32.457,107.217)
OP2: (0.513,-34.995,107.209)
C3': (3.378,-33.512,103.038)
C1': (4.906,-35.204,103.569)
C5': (3.107,-32.755,105.475)
O6: (2.380,-40.668,103.576)
O4': (4.725,-34.397,104.717)
C8: (3.357,-36.735,104.841)
C2: (4.538,-38.971,101.365)
C6: (3.079,-39.749,103.124)
C5: (3.316,-38.475,103.663)
C4: (4.131,-37.593,103.004)
P: (1.347,-33.773,107.150)
C4': (4.039,-33.164,104.357)
C2': (4.414,-34.406,102.371)
O2': (5.507,-33.638,101.867)
N1: (3.746,-39.917,101.942)
N2: (5.098,-39.333,100.212)
N3: (4.772,-37.772,101.853)
N7: (2.819,-37.925,104.820)
N9: (4.157,-36.459,103.765)
O5': (2.301,-33.848,105.875)
O3': (2.996,-32.387,102.268)
OP2: (0.513,-34.995,107.209)
C3': (3.378,-33.512,103.038)
C1': (4.906,-35.204,103.569)
C5': (3.107,-32.755,105.475)
O6: (2.380,-40.668,103.576)
O4': (4.725,-34.397,104.717)
C8: (3.357,-36.735,104.841)
C2: (4.538,-38.971,101.365)
C6: (3.079,-39.749,103.124)
C5: (3.316,-38.475,103.663)
C4: (4.131,-37.593,103.004)
P: (1.347,-33.773,107.150)
C4': (4.039,-33.164,104.357)
C2': (4.414,-34.406,102.371)
O2': (5.507,-33.638,101.867)
N1: (3.746,-39.917,101.942)
N2: (5.098,-39.333,100.212)
N3: (4.772,-37.772,101.853)
N7: (2.819,-37.925,104.820)
N9: (4.157,-36.459,103.765)
O5': (2.301,-33.848,105.875)
O3': (2.996,-32.387,102.268)
C2: (1.347,-38.643,99.895)
OP1: (1.341,-31.089,100.856)
OP2: (0.582,-32.931,102.491)
C4: (0.222,-38.192,101.903)
O5': (1.856,-33.528,100.386)
C3': (1.786,-35.012,97.853)
C1': (2.781,-36.869,98.893)
O4': (3.418,-35.702,99.381)
C5': (2.899,-33.352,99.445)
P: (1.580,-32.429,101.501)
O2: (1.667,-39.370,98.933)
C4': (3.050,-34.560,98.568)
C2': (2.054,-36.490,97.604)
O2': (2.950,-36.660,96.509)
N1: (1.853,-37.348,99.937)
N3: (0.514,-39.031,100.900)
N4: (-0.581,-38.591,102.877)
C6: (1.538,-36.518,100.982)
C5: (0.735,-36.884,101.976)
O3': (1.503,-34.264,96.681)
OP1: (1.341,-31.089,100.856)
OP2: (0.582,-32.931,102.491)
C4: (0.222,-38.192,101.903)
O5': (1.856,-33.528,100.386)
C3': (1.786,-35.012,97.853)
C1': (2.781,-36.869,98.893)
O4': (3.418,-35.702,99.381)
C5': (2.899,-33.352,99.445)
P: (1.580,-32.429,101.501)
O2: (1.667,-39.370,98.933)
C4': (3.050,-34.560,98.568)
C2': (2.054,-36.490,97.604)
O2': (2.950,-36.660,96.509)
N1: (1.853,-37.348,99.937)
N3: (0.514,-39.031,100.900)
N4: (-0.581,-38.591,102.877)
C6: (1.538,-36.518,100.982)
C5: (0.735,-36.884,101.976)
O3': (1.503,-34.264,96.681)
Image (generated by PyMOL):