Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3K1V:A23:A5
Extra
PDB:
ATOM 1 O3' A A 22 -20.433 -8.910 27.404 1.00 33.36 O
ATOM 2 P A A 23 -20.224 -10.370 26.754 1.00 34.27 P
ATOM 3 OP1 A A 23 -20.833 -11.354 27.687 1.00 30.23 O
ATOM 4 OP2 A A 23 -18.798 -10.509 26.368 1.00 32.66 O
ATOM 5 O5' A A 23 -21.066 -10.342 25.397 1.00 32.28 O
ATOM 6 C5' A A 23 -22.474 -10.536 25.393 1.00 30.07 C
ATOM 7 C4' A A 23 -22.998 -10.618 23.972 1.00 38.30 C
ATOM 8 O4' A A 23 -22.725 -9.371 23.277 1.00 32.60 O
ATOM 9 C3' A A 23 -22.379 -11.696 23.090 1.00 41.91 C
ATOM 10 O3' A A 23 -23.065 -12.933 23.271 1.00 48.38 O
ATOM 11 C2' A A 23 -22.595 -11.132 21.690 1.00 36.29 C
ATOM 12 O2' A A 23 -23.912 -11.320 21.222 1.00 33.97 O
ATOM 13 C1' A A 23 -22.370 -9.639 21.927 1.00 37.63 C
ATOM 14 N9 A A 23 -20.983 -9.215 21.723 1.00 32.89 N
ATOM 15 C8 A A 23 -19.989 -9.137 22.666 1.00 28.75 C
ATOM 16 N7 A A 23 -18.852 -8.681 22.199 1.00 30.53 N
ATOM 17 C5 A A 23 -19.110 -8.452 20.855 1.00 23.32 C
ATOM 18 C6 A A 23 -18.309 -7.961 19.805 1.00 23.48 C
ATOM 19 N6 A A 23 -17.034 -7.593 19.953 1.00 21.49 N
ATOM 20 N1 A A 23 -18.870 -7.863 18.583 1.00 22.90 N
ATOM 21 C2 A A 23 -20.146 -8.232 18.433 1.00 17.69 C
ATOM 22 N3 A A 23 -20.999 -8.702 19.338 1.00 27.63 N
ATOM 23 C4 A A 23 -20.414 -8.788 20.544 1.00 23.85 C
ATOM 24 P A A 24 -22.436 -14.295 22.692 1.00 42.35 P
ATOM 25 OP1 A A 24 -23.197 -15.415 23.301 1.00 56.55 O
ATOM 26 OP2 A A 24 -20.963 -14.239 22.849 1.00 44.28 O
ATOM 27 O5' A A 24 -22.791 -14.255 21.141 1.00 44.49 O
TER
ATOM 1 O3' G B 4 -11.846 -7.677 21.935 1.00 24.99 O
ATOM 2 P U B 5 -11.258 -9.102 21.474 1.00 26.53 P
ATOM 3 OP1 U B 5 -10.085 -9.408 22.326 1.00 19.81 O
ATOM 4 OP2 U B 5 -11.127 -9.142 19.995 1.00 22.10 O
ATOM 5 O5' U B 5 -12.406 -10.114 21.896 1.00 32.05 O
ATOM 6 C5' U B 5 -12.828 -10.191 23.248 1.00 21.50 C
ATOM 7 C4' U B 5 -14.101 -10.987 23.349 1.00 25.30 C
ATOM 8 O4' U B 5 -15.203 -10.257 22.750 1.00 25.16 O
ATOM 9 C3' U B 5 -14.089 -12.305 22.601 1.00 17.02 C
ATOM 10 O3' U B 5 -13.440 -13.298 23.374 1.00 28.43 O
ATOM 11 C2' U B 5 -15.573 -12.586 22.451 1.00 26.56 C
ATOM 12 O2' U B 5 -16.113 -13.081 23.656 1.00 26.10 O
ATOM 13 C1' U B 5 -16.120 -11.179 22.183 1.00 29.41 C
ATOM 14 N1 U B 5 -16.263 -10.870 20.753 1.00 26.94 N
ATOM 15 C2 U B 5 -17.445 -11.228 20.146 1.00 25.36 C
ATOM 16 O2 U B 5 -18.340 -11.800 20.740 1.00 21.71 O
ATOM 17 N3 U B 5 -17.542 -10.891 18.819 1.00 24.05 N
ATOM 18 C4 U B 5 -16.590 -10.250 18.054 1.00 27.96 C
ATOM 19 O4 U B 5 -16.831 -9.997 16.874 1.00 26.00 O
ATOM 20 C5 U B 5 -15.385 -9.924 18.754 1.00 23.93 C
ATOM 21 C6 U B 5 -15.265 -10.238 20.048 1.00 24.95 C
ATOM 22 P U B 6 -12.550 -14.413 22.643 1.00 26.79 P
ATOM 23 OP1 U B 6 -11.745 -15.109 23.679 1.00 31.12 O
ATOM 24 OP2 U B 6 -11.865 -13.756 21.500 1.00 24.64 O
ATOM 25 O5' U B 6 -13.636 -15.434 22.090 1.00 29.92 O
TER
ATOM 2 P A A 23 -20.224 -10.370 26.754 1.00 34.27 P
ATOM 3 OP1 A A 23 -20.833 -11.354 27.687 1.00 30.23 O
ATOM 4 OP2 A A 23 -18.798 -10.509 26.368 1.00 32.66 O
ATOM 5 O5' A A 23 -21.066 -10.342 25.397 1.00 32.28 O
ATOM 6 C5' A A 23 -22.474 -10.536 25.393 1.00 30.07 C
ATOM 7 C4' A A 23 -22.998 -10.618 23.972 1.00 38.30 C
ATOM 8 O4' A A 23 -22.725 -9.371 23.277 1.00 32.60 O
ATOM 9 C3' A A 23 -22.379 -11.696 23.090 1.00 41.91 C
ATOM 10 O3' A A 23 -23.065 -12.933 23.271 1.00 48.38 O
ATOM 11 C2' A A 23 -22.595 -11.132 21.690 1.00 36.29 C
ATOM 12 O2' A A 23 -23.912 -11.320 21.222 1.00 33.97 O
ATOM 13 C1' A A 23 -22.370 -9.639 21.927 1.00 37.63 C
ATOM 14 N9 A A 23 -20.983 -9.215 21.723 1.00 32.89 N
ATOM 15 C8 A A 23 -19.989 -9.137 22.666 1.00 28.75 C
ATOM 16 N7 A A 23 -18.852 -8.681 22.199 1.00 30.53 N
ATOM 17 C5 A A 23 -19.110 -8.452 20.855 1.00 23.32 C
ATOM 18 C6 A A 23 -18.309 -7.961 19.805 1.00 23.48 C
ATOM 19 N6 A A 23 -17.034 -7.593 19.953 1.00 21.49 N
ATOM 20 N1 A A 23 -18.870 -7.863 18.583 1.00 22.90 N
ATOM 21 C2 A A 23 -20.146 -8.232 18.433 1.00 17.69 C
ATOM 22 N3 A A 23 -20.999 -8.702 19.338 1.00 27.63 N
ATOM 23 C4 A A 23 -20.414 -8.788 20.544 1.00 23.85 C
ATOM 24 P A A 24 -22.436 -14.295 22.692 1.00 42.35 P
ATOM 25 OP1 A A 24 -23.197 -15.415 23.301 1.00 56.55 O
ATOM 26 OP2 A A 24 -20.963 -14.239 22.849 1.00 44.28 O
ATOM 27 O5' A A 24 -22.791 -14.255 21.141 1.00 44.49 O
TER
ATOM 1 O3' G B 4 -11.846 -7.677 21.935 1.00 24.99 O
ATOM 2 P U B 5 -11.258 -9.102 21.474 1.00 26.53 P
ATOM 3 OP1 U B 5 -10.085 -9.408 22.326 1.00 19.81 O
ATOM 4 OP2 U B 5 -11.127 -9.142 19.995 1.00 22.10 O
ATOM 5 O5' U B 5 -12.406 -10.114 21.896 1.00 32.05 O
ATOM 6 C5' U B 5 -12.828 -10.191 23.248 1.00 21.50 C
ATOM 7 C4' U B 5 -14.101 -10.987 23.349 1.00 25.30 C
ATOM 8 O4' U B 5 -15.203 -10.257 22.750 1.00 25.16 O
ATOM 9 C3' U B 5 -14.089 -12.305 22.601 1.00 17.02 C
ATOM 10 O3' U B 5 -13.440 -13.298 23.374 1.00 28.43 O
ATOM 11 C2' U B 5 -15.573 -12.586 22.451 1.00 26.56 C
ATOM 12 O2' U B 5 -16.113 -13.081 23.656 1.00 26.10 O
ATOM 13 C1' U B 5 -16.120 -11.179 22.183 1.00 29.41 C
ATOM 14 N1 U B 5 -16.263 -10.870 20.753 1.00 26.94 N
ATOM 15 C2 U B 5 -17.445 -11.228 20.146 1.00 25.36 C
ATOM 16 O2 U B 5 -18.340 -11.800 20.740 1.00 21.71 O
ATOM 17 N3 U B 5 -17.542 -10.891 18.819 1.00 24.05 N
ATOM 18 C4 U B 5 -16.590 -10.250 18.054 1.00 27.96 C
ATOM 19 O4 U B 5 -16.831 -9.997 16.874 1.00 26.00 O
ATOM 20 C5 U B 5 -15.385 -9.924 18.754 1.00 23.93 C
ATOM 21 C6 U B 5 -15.265 -10.238 20.048 1.00 24.95 C
ATOM 22 P U B 6 -12.550 -14.413 22.643 1.00 26.79 P
ATOM 23 OP1 U B 6 -11.745 -15.109 23.679 1.00 31.12 O
ATOM 24 OP2 U B 6 -11.865 -13.756 21.500 1.00 24.64 O
ATOM 25 O5' U B 6 -13.636 -15.434 22.090 1.00 29.92 O
TER
Atoms:
OP1: (-20.833,-11.354,27.687)
OP2: (-18.798,-10.509,26.368)
C3': (-22.379,-11.696,23.090)
C1': (-22.370,-9.639,21.927)
C5': (-22.474,-10.536,25.393)
O4': (-22.725,-9.371,23.277)
C8: (-19.989,-9.137,22.666)
O2': (-23.912,-11.320,21.222)
C6: (-18.309,-7.961,19.805)
C5: (-19.110,-8.452,20.855)
C4: (-20.414,-8.788,20.544)
P: (-20.224,-10.370,26.754)
C4': (-22.998,-10.618,23.972)
C2': (-22.595,-11.132,21.690)
C2: (-20.146,-8.232,18.433)
N1: (-18.870,-7.863,18.583)
N3: (-20.999,-8.702,19.338)
N6: (-17.034,-7.593,19.953)
N7: (-18.852,-8.681,22.199)
N9: (-20.983,-9.215,21.723)
O5': (-21.066,-10.342,25.397)
O3': (-23.065,-12.933,23.271)
OP2: (-18.798,-10.509,26.368)
C3': (-22.379,-11.696,23.090)
C1': (-22.370,-9.639,21.927)
C5': (-22.474,-10.536,25.393)
O4': (-22.725,-9.371,23.277)
C8: (-19.989,-9.137,22.666)
O2': (-23.912,-11.320,21.222)
C6: (-18.309,-7.961,19.805)
C5: (-19.110,-8.452,20.855)
C4: (-20.414,-8.788,20.544)
P: (-20.224,-10.370,26.754)
C4': (-22.998,-10.618,23.972)
C2': (-22.595,-11.132,21.690)
C2: (-20.146,-8.232,18.433)
N1: (-18.870,-7.863,18.583)
N3: (-20.999,-8.702,19.338)
N6: (-17.034,-7.593,19.953)
N7: (-18.852,-8.681,22.199)
N9: (-20.983,-9.215,21.723)
O5': (-21.066,-10.342,25.397)
O3': (-23.065,-12.933,23.271)
C4: (-16.590,-10.250,18.054)
N3: (-17.542,-10.891,18.819)
OP1: (-10.085,-9.408,22.326)
OP2: (-11.127,-9.142,19.995)
C2: (-17.445,-11.228,20.146)
C1': (-16.120,-11.179,22.183)
C3': (-14.089,-12.305,22.601)
O5': (-12.406,-10.114,21.896)
O4': (-15.203,-10.257,22.750)
C5': (-12.828,-10.191,23.248)
P: (-11.258,-9.102,21.474)
C4': (-14.101,-10.987,23.349)
C2': (-15.573,-12.586,22.451)
O2': (-16.113,-13.081,23.656)
N1: (-16.263,-10.870,20.753)
O4: (-16.831,-9.997,16.874)
O2: (-18.340,-11.800,20.740)
C6: (-15.265,-10.238,20.048)
C5: (-15.385,-9.924,18.754)
O3': (-13.440,-13.298,23.374)
N3: (-17.542,-10.891,18.819)
OP1: (-10.085,-9.408,22.326)
OP2: (-11.127,-9.142,19.995)
C2: (-17.445,-11.228,20.146)
C1': (-16.120,-11.179,22.183)
C3': (-14.089,-12.305,22.601)
O5': (-12.406,-10.114,21.896)
O4': (-15.203,-10.257,22.750)
C5': (-12.828,-10.191,23.248)
P: (-11.258,-9.102,21.474)
C4': (-14.101,-10.987,23.349)
C2': (-15.573,-12.586,22.451)
O2': (-16.113,-13.081,23.656)
N1: (-16.263,-10.870,20.753)
O4: (-16.831,-9.997,16.874)
O2: (-18.340,-11.800,20.740)
C6: (-15.265,-10.238,20.048)
C5: (-15.385,-9.924,18.754)
O3': (-13.440,-13.298,23.374)
Image (generated by PyMOL):