Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YYW:E6:E7
Extra
PDB:
ATOM 1 O3' U A 5 -41.917 -6.938 33.560 1.00 28.54 O
ATOM 2 P A A 6 -41.040 -6.158 32.464 1.00 36.45 P
ATOM 3 OP1 A A 6 -39.848 -5.619 33.160 1.00 40.58 O
ATOM 4 OP2 A A 6 -41.943 -5.238 31.732 1.00 36.91 O
ATOM 5 O5' A A 6 -40.564 -7.292 31.450 1.00 36.53 O
ATOM 6 C5' A A 6 -39.601 -8.272 31.841 1.00 33.96 C
ATOM 7 C4' A A 6 -39.414 -9.295 30.745 1.00 31.00 C
ATOM 8 O4' A A 6 -40.641 -10.050 30.558 1.00 29.59 O
ATOM 9 C3' A A 6 -39.121 -8.718 29.372 1.00 36.05 C
ATOM 10 O3' A A 6 -37.739 -8.460 29.219 1.00 37.77 O
ATOM 11 C2' A A 6 -39.574 -9.838 28.449 1.00 35.77 C
ATOM 12 O2' A A 6 -38.624 -10.878 28.349 1.00 38.80 O
ATOM 13 C1' A A 6 -40.819 -10.336 29.179 1.00 32.91 C
ATOM 14 N9 A A 6 -42.033 -9.659 28.729 1.00 36.22 N
ATOM 15 C8 A A 6 -42.683 -8.613 29.333 1.00 43.95 C
ATOM 16 N7 A A 6 -43.765 -8.226 28.702 1.00 43.69 N
ATOM 17 C5 A A 6 -43.829 -9.071 27.604 1.00 36.82 C
ATOM 18 C6 A A 6 -44.747 -9.179 26.551 1.00 36.20 C
ATOM 19 N6 A A 6 -45.823 -8.401 26.426 1.00 36.95 N
ATOM 20 N1 A A 6 -44.522 -10.127 25.618 1.00 33.06 N
ATOM 21 C2 A A 6 -43.444 -10.910 25.748 1.00 38.42 C
ATOM 22 N3 A A 6 -42.510 -10.908 26.694 1.00 31.13 N
ATOM 23 C4 A A 6 -42.764 -9.954 27.604 1.00 34.62 C
ATOM 24 P U A 7 -37.260 -7.298 28.229 1.00 40.35 P
ATOM 25 OP1 U A 7 -35.800 -7.123 28.420 1.00 35.34 O
ATOM 26 OP2 U A 7 -38.176 -6.148 28.435 1.00 40.69 O
ATOM 27 O5' U A 7 -37.517 -7.888 26.772 1.00 32.45 O
TER
ATOM 1 O3' A B 6 -37.739 -8.460 29.219 1.00 37.77 O
ATOM 2 P U B 7 -37.260 -7.298 28.229 1.00 40.35 P
ATOM 3 OP1 U B 7 -35.800 -7.123 28.420 1.00 35.34 O
ATOM 4 OP2 U B 7 -38.176 -6.148 28.435 1.00 40.69 O
ATOM 5 O5' U B 7 -37.517 -7.888 26.772 1.00 32.45 O
ATOM 6 C5' U B 7 -36.672 -8.896 26.234 1.00 28.35 C
ATOM 7 C4' U B 7 -37.162 -9.317 24.869 1.00 25.80 C
ATOM 8 O4' U B 7 -38.484 -9.902 24.997 1.00 33.16 O
ATOM 9 C3' U B 7 -37.355 -8.200 23.862 1.00 27.88 C
ATOM 10 O3' U B 7 -36.136 -7.869 23.216 1.00 37.49 O
ATOM 11 C2' U B 7 -38.353 -8.822 22.898 1.00 25.90 C
ATOM 12 O2' U B 7 -37.748 -9.756 22.032 1.00 31.86 O
ATOM 13 C1' U B 7 -39.272 -9.563 23.867 1.00 26.67 C
ATOM 14 N1 U B 7 -40.394 -8.732 24.323 1.00 33.07 N
ATOM 15 C2 U B 7 -41.560 -8.763 23.585 1.00 37.78 C
ATOM 16 O2 U B 7 -41.695 -9.456 22.592 1.00 43.30 O
ATOM 17 N3 U B 7 -42.563 -7.953 24.054 1.00 37.11 N
ATOM 18 C4 U B 7 -42.519 -7.134 25.163 1.00 38.64 C
ATOM 19 O4 U B 7 -43.494 -6.435 25.436 1.00 46.63 O
ATOM 20 C5 U B 7 -41.283 -7.165 25.879 1.00 31.08 C
ATOM 21 C6 U B 7 -40.288 -7.943 25.446 1.00 30.32 C
ATOM 22 P A B 8 -35.957 -6.412 22.564 1.00 49.44 P
ATOM 23 OP1 A B 8 -34.560 -6.277 22.081 1.00 50.04 O
ATOM 24 OP2 A B 8 -36.494 -5.424 23.536 1.00 45.31 O
ATOM 25 O5' A B 8 -36.918 -6.452 21.297 1.00 39.16 O
TER
ATOM 2 P A A 6 -41.040 -6.158 32.464 1.00 36.45 P
ATOM 3 OP1 A A 6 -39.848 -5.619 33.160 1.00 40.58 O
ATOM 4 OP2 A A 6 -41.943 -5.238 31.732 1.00 36.91 O
ATOM 5 O5' A A 6 -40.564 -7.292 31.450 1.00 36.53 O
ATOM 6 C5' A A 6 -39.601 -8.272 31.841 1.00 33.96 C
ATOM 7 C4' A A 6 -39.414 -9.295 30.745 1.00 31.00 C
ATOM 8 O4' A A 6 -40.641 -10.050 30.558 1.00 29.59 O
ATOM 9 C3' A A 6 -39.121 -8.718 29.372 1.00 36.05 C
ATOM 10 O3' A A 6 -37.739 -8.460 29.219 1.00 37.77 O
ATOM 11 C2' A A 6 -39.574 -9.838 28.449 1.00 35.77 C
ATOM 12 O2' A A 6 -38.624 -10.878 28.349 1.00 38.80 O
ATOM 13 C1' A A 6 -40.819 -10.336 29.179 1.00 32.91 C
ATOM 14 N9 A A 6 -42.033 -9.659 28.729 1.00 36.22 N
ATOM 15 C8 A A 6 -42.683 -8.613 29.333 1.00 43.95 C
ATOM 16 N7 A A 6 -43.765 -8.226 28.702 1.00 43.69 N
ATOM 17 C5 A A 6 -43.829 -9.071 27.604 1.00 36.82 C
ATOM 18 C6 A A 6 -44.747 -9.179 26.551 1.00 36.20 C
ATOM 19 N6 A A 6 -45.823 -8.401 26.426 1.00 36.95 N
ATOM 20 N1 A A 6 -44.522 -10.127 25.618 1.00 33.06 N
ATOM 21 C2 A A 6 -43.444 -10.910 25.748 1.00 38.42 C
ATOM 22 N3 A A 6 -42.510 -10.908 26.694 1.00 31.13 N
ATOM 23 C4 A A 6 -42.764 -9.954 27.604 1.00 34.62 C
ATOM 24 P U A 7 -37.260 -7.298 28.229 1.00 40.35 P
ATOM 25 OP1 U A 7 -35.800 -7.123 28.420 1.00 35.34 O
ATOM 26 OP2 U A 7 -38.176 -6.148 28.435 1.00 40.69 O
ATOM 27 O5' U A 7 -37.517 -7.888 26.772 1.00 32.45 O
TER
ATOM 1 O3' A B 6 -37.739 -8.460 29.219 1.00 37.77 O
ATOM 2 P U B 7 -37.260 -7.298 28.229 1.00 40.35 P
ATOM 3 OP1 U B 7 -35.800 -7.123 28.420 1.00 35.34 O
ATOM 4 OP2 U B 7 -38.176 -6.148 28.435 1.00 40.69 O
ATOM 5 O5' U B 7 -37.517 -7.888 26.772 1.00 32.45 O
ATOM 6 C5' U B 7 -36.672 -8.896 26.234 1.00 28.35 C
ATOM 7 C4' U B 7 -37.162 -9.317 24.869 1.00 25.80 C
ATOM 8 O4' U B 7 -38.484 -9.902 24.997 1.00 33.16 O
ATOM 9 C3' U B 7 -37.355 -8.200 23.862 1.00 27.88 C
ATOM 10 O3' U B 7 -36.136 -7.869 23.216 1.00 37.49 O
ATOM 11 C2' U B 7 -38.353 -8.822 22.898 1.00 25.90 C
ATOM 12 O2' U B 7 -37.748 -9.756 22.032 1.00 31.86 O
ATOM 13 C1' U B 7 -39.272 -9.563 23.867 1.00 26.67 C
ATOM 14 N1 U B 7 -40.394 -8.732 24.323 1.00 33.07 N
ATOM 15 C2 U B 7 -41.560 -8.763 23.585 1.00 37.78 C
ATOM 16 O2 U B 7 -41.695 -9.456 22.592 1.00 43.30 O
ATOM 17 N3 U B 7 -42.563 -7.953 24.054 1.00 37.11 N
ATOM 18 C4 U B 7 -42.519 -7.134 25.163 1.00 38.64 C
ATOM 19 O4 U B 7 -43.494 -6.435 25.436 1.00 46.63 O
ATOM 20 C5 U B 7 -41.283 -7.165 25.879 1.00 31.08 C
ATOM 21 C6 U B 7 -40.288 -7.943 25.446 1.00 30.32 C
ATOM 22 P A B 8 -35.957 -6.412 22.564 1.00 49.44 P
ATOM 23 OP1 A B 8 -34.560 -6.277 22.081 1.00 50.04 O
ATOM 24 OP2 A B 8 -36.494 -5.424 23.536 1.00 45.31 O
ATOM 25 O5' A B 8 -36.918 -6.452 21.297 1.00 39.16 O
TER
Atoms:
OP1: (-39.848,-5.619,33.160)
OP2: (-41.943,-5.238,31.732)
C3': (-39.121,-8.718,29.372)
C1': (-40.819,-10.336,29.179)
C5': (-39.601,-8.272,31.841)
O4': (-40.641,-10.050,30.558)
C8: (-42.683,-8.613,29.333)
O2': (-38.624,-10.878,28.349)
C6: (-44.747,-9.179,26.551)
C5: (-43.829,-9.071,27.604)
C4: (-42.764,-9.954,27.604)
P: (-41.040,-6.158,32.464)
C4': (-39.414,-9.295,30.745)
C2': (-39.574,-9.838,28.449)
C2: (-43.444,-10.910,25.748)
N1: (-44.522,-10.127,25.618)
N3: (-42.510,-10.908,26.694)
N6: (-45.823,-8.401,26.426)
N7: (-43.765,-8.226,28.702)
N9: (-42.033,-9.659,28.729)
O5': (-40.564,-7.292,31.450)
O3': (-37.739,-8.460,29.219)
OP2: (-41.943,-5.238,31.732)
C3': (-39.121,-8.718,29.372)
C1': (-40.819,-10.336,29.179)
C5': (-39.601,-8.272,31.841)
O4': (-40.641,-10.050,30.558)
C8: (-42.683,-8.613,29.333)
O2': (-38.624,-10.878,28.349)
C6: (-44.747,-9.179,26.551)
C5: (-43.829,-9.071,27.604)
C4: (-42.764,-9.954,27.604)
P: (-41.040,-6.158,32.464)
C4': (-39.414,-9.295,30.745)
C2': (-39.574,-9.838,28.449)
C2: (-43.444,-10.910,25.748)
N1: (-44.522,-10.127,25.618)
N3: (-42.510,-10.908,26.694)
N6: (-45.823,-8.401,26.426)
N7: (-43.765,-8.226,28.702)
N9: (-42.033,-9.659,28.729)
O5': (-40.564,-7.292,31.450)
O3': (-37.739,-8.460,29.219)
C4: (-42.519,-7.134,25.163)
N3: (-42.563,-7.953,24.054)
OP1: (-35.800,-7.123,28.420)
OP2: (-38.176,-6.148,28.435)
C2: (-41.560,-8.763,23.585)
C1': (-39.272,-9.563,23.867)
C3': (-37.355,-8.200,23.862)
O5': (-37.517,-7.888,26.772)
O4': (-38.484,-9.902,24.997)
C5': (-36.672,-8.896,26.234)
P: (-37.260,-7.298,28.229)
C4': (-37.162,-9.317,24.869)
C2': (-38.353,-8.822,22.898)
O2': (-37.748,-9.756,22.032)
N1: (-40.394,-8.732,24.323)
O4: (-43.494,-6.435,25.436)
O2: (-41.695,-9.456,22.592)
C6: (-40.288,-7.943,25.446)
C5: (-41.283,-7.165,25.879)
O3': (-36.136,-7.869,23.216)
N3: (-42.563,-7.953,24.054)
OP1: (-35.800,-7.123,28.420)
OP2: (-38.176,-6.148,28.435)
C2: (-41.560,-8.763,23.585)
C1': (-39.272,-9.563,23.867)
C3': (-37.355,-8.200,23.862)
O5': (-37.517,-7.888,26.772)
O4': (-38.484,-9.902,24.997)
C5': (-36.672,-8.896,26.234)
P: (-37.260,-7.298,28.229)
C4': (-37.162,-9.317,24.869)
C2': (-38.353,-8.822,22.898)
O2': (-37.748,-9.756,22.032)
N1: (-40.394,-8.732,24.323)
O4: (-43.494,-6.435,25.436)
O2: (-41.695,-9.456,22.592)
C6: (-40.288,-7.943,25.446)
C5: (-41.283,-7.165,25.879)
O3': (-36.136,-7.869,23.216)
Image (generated by PyMOL):