Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:9104:9105
Extra
PDB:
ATOM 1 O3' A A 103 52.085 57.082 116.986 1.00 54.62 O
ATOM 2 P A A 104 52.123 55.843 117.998 1.00 54.77 P
ATOM 3 OP1 A A 104 52.902 54.758 117.341 1.00 54.16 O
ATOM 4 OP2 A A 104 50.734 55.588 118.457 1.00 53.29 O
ATOM 5 O5' A A 104 52.939 56.403 119.245 1.00 53.23 O
ATOM 6 C5' A A 104 54.284 56.853 119.073 1.00 55.45 C
ATOM 7 C4' A A 104 54.829 57.387 120.366 1.00 57.53 C
ATOM 8 O4' A A 104 54.009 58.493 120.815 1.00 58.40 O
ATOM 9 C3' A A 104 54.810 56.440 121.546 1.00 59.20 C
ATOM 10 O3' A A 104 55.891 55.526 121.505 1.00 61.88 O
ATOM 11 C2' A A 104 54.921 57.404 122.716 1.00 59.32 C
ATOM 12 O2' A A 104 56.247 57.866 122.909 1.00 59.42 O
ATOM 13 C1' A A 104 54.033 58.554 122.233 1.00 58.90 C
ATOM 14 N9 A A 104 52.658 58.460 122.719 1.00 59.06 N
ATOM 15 C8 A A 104 51.592 57.825 122.126 1.00 60.50 C
ATOM 16 N7 A A 104 50.475 57.917 122.809 1.00 59.81 N
ATOM 17 C5 A A 104 50.829 58.659 123.927 1.00 58.94 C
ATOM 18 C6 A A 104 50.095 59.098 125.040 1.00 58.18 C
ATOM 19 N6 A A 104 48.802 58.837 125.223 1.00 58.42 N
ATOM 20 N1 A A 104 50.742 59.821 125.973 1.00 57.74 N
ATOM 21 C2 A A 104 52.042 60.077 125.794 1.00 59.27 C
ATOM 22 N3 A A 104 52.845 59.716 124.794 1.00 59.57 N
ATOM 23 C4 A A 104 52.169 59.001 123.883 1.00 58.97 C
ATOM 24 P U A 105 55.678 54.024 122.035 1.00 65.89 P
ATOM 25 OP1 U A 105 57.039 53.416 122.119 1.00 65.20 O
ATOM 26 OP2 U A 105 54.617 53.349 121.236 1.00 63.86 O
ATOM 27 O5' U A 105 55.111 54.219 123.509 1.00 65.79 O
TER
ATOM 1 O3' A B 104 55.891 55.526 121.505 1.00 61.88 O
ATOM 2 P U B 105 55.678 54.024 122.035 1.00 65.89 P
ATOM 3 OP1 U B 105 57.039 53.416 122.119 1.00 65.20 O
ATOM 4 OP2 U B 105 54.617 53.349 121.236 1.00 63.86 O
ATOM 5 O5' U B 105 55.111 54.219 123.509 1.00 65.79 O
ATOM 6 C5' U B 105 55.927 54.807 124.531 1.00 70.33 C
ATOM 7 C4' U B 105 55.138 54.960 125.803 1.00 73.60 C
ATOM 8 O4' U B 105 54.050 55.898 125.591 1.00 73.60 O
ATOM 9 C3' U B 105 54.453 53.698 126.296 1.00 76.25 C
ATOM 10 O3' U B 105 55.360 52.854 127.005 1.00 79.25 O
ATOM 11 C2' U B 105 53.332 54.268 127.158 1.00 75.85 C
ATOM 12 O2' U B 105 53.788 54.720 128.420 1.00 76.70 O
ATOM 13 C1' U B 105 52.911 55.480 126.323 1.00 73.70 C
ATOM 14 N1 U B 105 51.844 55.179 125.358 1.00 72.60 N
ATOM 15 C2 U B 105 50.562 55.592 125.667 1.00 72.04 C
ATOM 16 O2 U B 105 50.284 56.173 126.706 1.00 72.58 O
ATOM 17 N3 U B 105 49.617 55.299 124.716 1.00 70.97 N
ATOM 18 C4 U B 105 49.820 54.649 123.515 1.00 71.01 C
ATOM 19 O4 U B 105 48.875 54.499 122.739 1.00 71.78 O
ATOM 20 C5 U B 105 51.170 54.243 123.277 1.00 70.90 C
ATOM 21 C6 U B 105 52.110 54.513 124.180 1.00 71.01 C
ATOM 22 P C B 106 55.059 51.279 127.126 1.00 80.31 P
ATOM 23 OP1 C B 106 56.162 50.705 127.937 1.00 80.16 O
ATOM 24 OP2 C B 106 54.774 50.716 125.782 1.00 79.01 O
ATOM 25 O5' C B 106 53.722 51.238 127.988 1.00 81.25 O
TER
ATOM 2 P A A 104 52.123 55.843 117.998 1.00 54.77 P
ATOM 3 OP1 A A 104 52.902 54.758 117.341 1.00 54.16 O
ATOM 4 OP2 A A 104 50.734 55.588 118.457 1.00 53.29 O
ATOM 5 O5' A A 104 52.939 56.403 119.245 1.00 53.23 O
ATOM 6 C5' A A 104 54.284 56.853 119.073 1.00 55.45 C
ATOM 7 C4' A A 104 54.829 57.387 120.366 1.00 57.53 C
ATOM 8 O4' A A 104 54.009 58.493 120.815 1.00 58.40 O
ATOM 9 C3' A A 104 54.810 56.440 121.546 1.00 59.20 C
ATOM 10 O3' A A 104 55.891 55.526 121.505 1.00 61.88 O
ATOM 11 C2' A A 104 54.921 57.404 122.716 1.00 59.32 C
ATOM 12 O2' A A 104 56.247 57.866 122.909 1.00 59.42 O
ATOM 13 C1' A A 104 54.033 58.554 122.233 1.00 58.90 C
ATOM 14 N9 A A 104 52.658 58.460 122.719 1.00 59.06 N
ATOM 15 C8 A A 104 51.592 57.825 122.126 1.00 60.50 C
ATOM 16 N7 A A 104 50.475 57.917 122.809 1.00 59.81 N
ATOM 17 C5 A A 104 50.829 58.659 123.927 1.00 58.94 C
ATOM 18 C6 A A 104 50.095 59.098 125.040 1.00 58.18 C
ATOM 19 N6 A A 104 48.802 58.837 125.223 1.00 58.42 N
ATOM 20 N1 A A 104 50.742 59.821 125.973 1.00 57.74 N
ATOM 21 C2 A A 104 52.042 60.077 125.794 1.00 59.27 C
ATOM 22 N3 A A 104 52.845 59.716 124.794 1.00 59.57 N
ATOM 23 C4 A A 104 52.169 59.001 123.883 1.00 58.97 C
ATOM 24 P U A 105 55.678 54.024 122.035 1.00 65.89 P
ATOM 25 OP1 U A 105 57.039 53.416 122.119 1.00 65.20 O
ATOM 26 OP2 U A 105 54.617 53.349 121.236 1.00 63.86 O
ATOM 27 O5' U A 105 55.111 54.219 123.509 1.00 65.79 O
TER
ATOM 1 O3' A B 104 55.891 55.526 121.505 1.00 61.88 O
ATOM 2 P U B 105 55.678 54.024 122.035 1.00 65.89 P
ATOM 3 OP1 U B 105 57.039 53.416 122.119 1.00 65.20 O
ATOM 4 OP2 U B 105 54.617 53.349 121.236 1.00 63.86 O
ATOM 5 O5' U B 105 55.111 54.219 123.509 1.00 65.79 O
ATOM 6 C5' U B 105 55.927 54.807 124.531 1.00 70.33 C
ATOM 7 C4' U B 105 55.138 54.960 125.803 1.00 73.60 C
ATOM 8 O4' U B 105 54.050 55.898 125.591 1.00 73.60 O
ATOM 9 C3' U B 105 54.453 53.698 126.296 1.00 76.25 C
ATOM 10 O3' U B 105 55.360 52.854 127.005 1.00 79.25 O
ATOM 11 C2' U B 105 53.332 54.268 127.158 1.00 75.85 C
ATOM 12 O2' U B 105 53.788 54.720 128.420 1.00 76.70 O
ATOM 13 C1' U B 105 52.911 55.480 126.323 1.00 73.70 C
ATOM 14 N1 U B 105 51.844 55.179 125.358 1.00 72.60 N
ATOM 15 C2 U B 105 50.562 55.592 125.667 1.00 72.04 C
ATOM 16 O2 U B 105 50.284 56.173 126.706 1.00 72.58 O
ATOM 17 N3 U B 105 49.617 55.299 124.716 1.00 70.97 N
ATOM 18 C4 U B 105 49.820 54.649 123.515 1.00 71.01 C
ATOM 19 O4 U B 105 48.875 54.499 122.739 1.00 71.78 O
ATOM 20 C5 U B 105 51.170 54.243 123.277 1.00 70.90 C
ATOM 21 C6 U B 105 52.110 54.513 124.180 1.00 71.01 C
ATOM 22 P C B 106 55.059 51.279 127.126 1.00 80.31 P
ATOM 23 OP1 C B 106 56.162 50.705 127.937 1.00 80.16 O
ATOM 24 OP2 C B 106 54.774 50.716 125.782 1.00 79.01 O
ATOM 25 O5' C B 106 53.722 51.238 127.988 1.00 81.25 O
TER
Atoms:
OP1: (52.902,54.758,117.341)
OP2: (50.734,55.588,118.457)
C3': (54.810,56.440,121.546)
C1': (54.033,58.554,122.233)
C5': (54.284,56.853,119.073)
O4': (54.009,58.493,120.815)
C8: (51.592,57.825,122.126)
O2': (56.247,57.866,122.909)
C6: (50.095,59.098,125.040)
C5: (50.829,58.659,123.927)
C4: (52.169,59.001,123.883)
P: (52.123,55.843,117.998)
C4': (54.829,57.387,120.366)
C2': (54.921,57.404,122.716)
C2: (52.042,60.077,125.794)
N1: (50.742,59.821,125.973)
N3: (52.845,59.716,124.794)
N6: (48.802,58.837,125.223)
N7: (50.475,57.917,122.809)
N9: (52.658,58.460,122.719)
O5': (52.939,56.403,119.245)
O3': (55.891,55.526,121.505)
OP2: (50.734,55.588,118.457)
C3': (54.810,56.440,121.546)
C1': (54.033,58.554,122.233)
C5': (54.284,56.853,119.073)
O4': (54.009,58.493,120.815)
C8: (51.592,57.825,122.126)
O2': (56.247,57.866,122.909)
C6: (50.095,59.098,125.040)
C5: (50.829,58.659,123.927)
C4: (52.169,59.001,123.883)
P: (52.123,55.843,117.998)
C4': (54.829,57.387,120.366)
C2': (54.921,57.404,122.716)
C2: (52.042,60.077,125.794)
N1: (50.742,59.821,125.973)
N3: (52.845,59.716,124.794)
N6: (48.802,58.837,125.223)
N7: (50.475,57.917,122.809)
N9: (52.658,58.460,122.719)
O5': (52.939,56.403,119.245)
O3': (55.891,55.526,121.505)
C4: (49.820,54.649,123.515)
N3: (49.617,55.299,124.716)
OP1: (57.039,53.416,122.119)
OP2: (54.617,53.349,121.236)
C2: (50.562,55.592,125.667)
C1': (52.911,55.480,126.323)
C3': (54.453,53.698,126.296)
O5': (55.111,54.219,123.509)
O4': (54.050,55.898,125.591)
C5': (55.927,54.807,124.531)
P: (55.678,54.024,122.035)
C4': (55.138,54.960,125.803)
C2': (53.332,54.268,127.158)
O2': (53.788,54.720,128.420)
N1: (51.844,55.179,125.358)
O4: (48.875,54.499,122.739)
O2: (50.284,56.173,126.706)
C6: (52.110,54.513,124.180)
C5: (51.170,54.243,123.277)
O3': (55.360,52.854,127.005)
N3: (49.617,55.299,124.716)
OP1: (57.039,53.416,122.119)
OP2: (54.617,53.349,121.236)
C2: (50.562,55.592,125.667)
C1': (52.911,55.480,126.323)
C3': (54.453,53.698,126.296)
O5': (55.111,54.219,123.509)
O4': (54.050,55.898,125.591)
C5': (55.927,54.807,124.531)
P: (55.678,54.024,122.035)
C4': (55.138,54.960,125.803)
C2': (53.332,54.268,127.158)
O2': (53.788,54.720,128.420)
N1: (51.844,55.179,125.358)
O4: (48.875,54.499,122.739)
O2: (50.284,56.173,126.706)
C6: (52.110,54.513,124.180)
C5: (51.170,54.243,123.277)
O3': (55.360,52.854,127.005)
Image (generated by PyMOL):